Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for SMPD3

Gene Name Gene ID Reads Annotation
SMPD3 ENSGALG00000034950 4335 sphingomyelin phosphodiesterase 3 [Source:HGNC Symbol;Acc:HGNC:14240]











Genes with expression patterns similar to SMPD3

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. SMPD3 ENSGALG00000034950 4335 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 sphingomyelin phosphodiesterase 3 [Source:HGNC Symbol;Acc:HGNC:14240]
2. NUDCD2 ENSGALG00000001726 6303 1.79 - - 0.812 - - - 0.978 - - - NudC domain containing 2 [Source:HGNC Symbol;Acc:HGNC:30535]
3. CKAP2 ENSGALG00000017025 25020 1.709 - - 0.710 - - - 0.999 - - - cytoskeleton associated protein 2 [Source:NCBI gene;Acc:418882]
4. CMTM8 ENSGALG00000011484 2826 1.636 - - 0.809 - 0.827 - - - - - CKLF like MARVEL transmembrane domain containing 8 [Source:NCBI gene;Acc:420665]
5. PAX3 ENSGALG00000030944 2987 1.634 - - - - 0.863 0.771 - - - - paired box 3 [Source:NCBI gene;Acc:374127]
6. RTN1 ENSGALG00000012006 2438 1.63 - - - - 0.806 0.824 - - - - reticulon 1 [Source:NCBI gene;Acc:378791]
7. GABRA3 ENSGALG00000007269 985 1.609 - - - - 0.852 0.757 - - - - gamma-aminobutyric acid type A receptor alpha3 subunit [Source:HGNC Symbol;Acc:HGNC:4077]
8. PCDH17 ENSGALG00000016941 1006 1.585 - - 0.812 - - - - 0.773 - - protocadherin 17 [Source:HGNC Symbol;Acc:HGNC:14267]
9. DRAXIN ENSGALG00000004631 3122 1.576 - - - 0.794 - 0.782 - - - - dorsal inhibitory axon guidance protein [Source:NCBI gene;Acc:419492]
10. ENSGALG00000027373 ENSGALG00000027373 2129 1.574 - - - 0.782 0.792 - - - - -
11. PRTG ENSGALG00000037336 34665 1.565 - - 0.802 - 0.763 - - - - - protogenin [Source:NCBI gene;Acc:415407]
12. HOXB-7 HOXB-7 2066 1.536 - - - 0.727 0.809 - - - - -
13. C17orf75 ENSGALG00000003434 4262 1.527 - - 0.801 - - 0.726 - - - - chromosome 17 open reading frame 75 [Source:HGNC Symbol;Acc:HGNC:30173]
14. DENND5B 4077 1.513 - - - - - 0.759 - - - 0.754 DENN domain containing 5B, transcript variant X1
15. NSG1 ENSGALG00000015010 5829 1.508 - - - - - 0.774 - - - 0.734 neuron specific gene family member 1 [Source:NCBI gene;Acc:395251]
16. PTPRZ1 ENSGALG00000040114 3410 1.477 - - - 0.774 - - - - - 0.703 protein tyrosine phosphatase, receptor type Z1 [Source:NCBI gene;Acc:396403]
17. GNG10 ENSGALG00000015683 6905 1.475 - - - - 0.769 0.706 - - - - G protein subunit gamma 10 [Source:NCBI gene;Acc:769603]
18. MAP2 ENSGALG00000002789 6597 1.473 - - - - - 0.712 - - - 0.761 microtubule associated protein 2, transcript variant X33
19. ZIC1 ENSGALG00000040532 6543 1.461 - - - 0.736 - 0.725 - - - - Zic family member 1 [Source:NCBI gene;Acc:374103]
20. TRABD2A ENSGALG00000026395 704 1.453 - - - - 0.746 0.707 - - - - TraB domain containing 2A, transcript variant X3
21. CERCAM ENSGALG00000004986 5158 1.442 - - - 0.705 - 0.737 - - - - cerebral endothelial cell adhesion molecule [Source:HGNC Symbol;Acc:HGNC:23723]
22. CFTR ENSGALG00000032986 424 1.44 - - - - 0.730 0.710 - - - - cystic fibrosis transmembrane conductance regulator [Source:NCBI gene;Acc:100049619]
23. WNT4 ENSGALG00000041708 1277 1.439 - - - 0.706 - 0.733 - - - - Wnt family member 4 [Source:NCBI gene;Acc:395561]
24. DEPDC1B ENSGALG00000014729 5334 0.999 - - - - - - 0.999 - - - DEP domain containing 1B [Source:NCBI gene;Acc:427152]
25. CHKA ENSGALG00000036754 5077 0.999 - - - - - - 0.999 - - - choline kinase alpha [Source:HGNC Symbol;Acc:HGNC:1937]
26. RBM45 ENSGALG00000009202 6057 0.999 - - - - - - 0.999 - - - RNA binding motif protein 45 [Source:NCBI gene;Acc:424132]
27. IGDCC3 ENSGALG00000007371 2434 0.999 - - - - - - 0.999 - - - immunoglobulin superfamily DCC subclass member 3 [Source:HGNC Symbol;Acc:HGNC:9700]
28. APP ENSGALG00000015770 9438 0.999 - - - - - - 0.999 - - - amyloid beta (A4) precursor protein [Source:NCBI gene;Acc:374198]
29. UGCG ENSGALG00000015682 2735 0.999 - - - - - - 0.999 - - - UDP-glucose ceramide glucosyltransferase [Source:HGNC Symbol;Acc:HGNC:12524]
30. SLBP ENSGALG00000015712 5586 0.999 - - - - - - 0.999 - - - stem-loop binding protein [Source:NCBI gene;Acc:422902]
31. TOPBP1 ENSGALG00000034461 3094 0.999 - - - - - - 0.999 - - - DNA topoisomerase II binding protein 1 [Source:HGNC Symbol;Acc:HGNC:17008]
32. GATAD2A ENSGALG00000042900 6337 0.999 - - - - - - 0.999 - - - GATA zinc finger domain containing 2A [Source:NCBI gene;Acc:420109]
33. HSD17B12 ENSGALG00000036787 11748 0.999 - - - - - - 0.999 - - - hydroxysteroid 17-beta dehydrogenase 12 [Source:HGNC Symbol;Acc:HGNC:18646]
34. GALT ENSGALG00000026195 2002 0.999 - - - - - - 0.999 - - - galactose-1-phosphate uridylyltransferase [Source:HGNC Symbol;Acc:HGNC:4135]
35. RBM18 ENSGALG00000028167 10372 0.998 - - - - - - 0.998 - - - RNA binding motif protein 18 [Source:HGNC Symbol;Acc:HGNC:28413]
36. IRF6 ENSGALG00000001405 3144 0.998 - - - - - - 0.998 - - - interferon regulatory factor 6 [Source:HGNC Symbol;Acc:HGNC:6121]
37. RALBP1 ENSGALG00000008405 13780 0.998 - - - - - - 0.998 - - - ralA binding protein 1 [Source:NCBI gene;Acc:429466]
38. THOC5 ENSGALG00000029223 16069 0.998 - - - - - - 0.998 - - - THO complex 5 [Source:NCBI gene;Acc:417019]
39. DDX1 ENSGALG00000016461 15157 0.997 - - - - - - 0.997 - - - DEAD-box helicase 1 [Source:NCBI gene;Acc:395249]
40. PLOD2 ENSGALG00000006783 22789 0.997 - - - - - - 0.997 - - - procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 [Source:HGNC Symbol;Acc:HGNC:9082]
41. C28H19ORF10 C28H19ORF10 16529 0.996 - - - - - - 0.996 - - -
42. C1D ENSGALG00000008765 14779 0.996 - - - - - - 0.996 - - - C1D nuclear receptor corepressor [Source:NCBI gene;Acc:421267]
43. UTP15 ENSGALG00000013510 13122 0.996 - - - - - - 0.996 - - - UTP15, small subunit processome component [Source:NCBI gene;Acc:426152]
44. YWHAE ENSGALG00000002661 37143 0.995 - - - - - - 0.995 - - - tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon [Source:NCBI gene;Acc:417554]
45. DDOST ENSGALG00000010073 18707 0.995 - - - - - - 0.995 - - - dolichyl-diphosphooligosaccharide--protein glycosyltransferase non-catalytic subunit [Source:NCBI gene;Acc:425542]
46. HECTD3 ENSGALG00000010217 2513 0.993 - - - - - - 0.993 - - - HECT domain E3 ubiquitin protein ligase 3, transcript variant X2
47. LSM7 ENSGALG00000000408 19112 0.986 - - - - - - 0.986 - - - LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated [Source:NCBI gene;Acc:420055]
48. BZW2 ENSGALG00000010809 29213 0.984 - - - - - - 0.984 - - - basic leucine zipper and W2 domains 2 [Source:NCBI gene;Acc:420594]
49. NDUFA10 ENSGALG00000004302 41948 0.972 - - - - - - 0.972 - - - NADH:ubiquinone oxidoreductase subunit A10 [Source:NCBI gene;Acc:424032]
50. ASNS ENSGALG00000009748 11822 0.967 - - - - - - 0.967 - - - asparagine synthetase (glutamine-hydrolyzing) [Source:NCBI gene;Acc:420574]
51. RNF7 ENSGALG00000021117 13110 0.953 - - - - - - 0.953 - - - ring finger protein 7 [Source:NCBI gene;Acc:424781]
52. SUGT1 ENSGALG00000016946 22881 0.944 - - - - - - 0.944 - - - SGT1 homolog, MIS12 kinetochore complex assembly cochaperone [Source:NCBI gene;Acc:418827]
53. SF3B6 ENSGALG00000016501 28236 0.922 - - - - - - 0.922 - - - splicing factor 3b subunit 6 [Source:HGNC Symbol;Acc:HGNC:30096]
54. IDH1 ENSGALG00000008818 17613 0.921 - - - - - - 0.921 - - - isocitrate dehydrogenase (NADP(+)) 1, cytosolic [Source:HGNC Symbol;Acc:HGNC:5382]
55. CDC42 ENSGALG00000004796 59878 0.898 - - - - - - 0.898 - - - cell division cycle 42 [Source:NCBI gene;Acc:395917]
56. NDP ENSGALG00000016222 1067 0.897 - - - - 0.897 - - - - - NDP, norrin cystine knot growth factor [Source:NCBI gene;Acc:418560]
57. MIB1 ENSGALG00000014974 3583 0.883 - - 0.883 - - - - - - - mindbomb E3 ubiquitin protein ligase 1 [Source:HGNC Symbol;Acc:HGNC:21086]
58. IFT57 ENSGALG00000015356 5540 0.876 - - 0.876 - - - - - - - intraflagellar transport 57 [Source:HGNC Symbol;Acc:HGNC:17367]
59. NDC1 ENSGALG00000031606 3094 0.873 - - 0.873 - - - - - - - NDC1 transmembrane nucleoporin [Source:HGNC Symbol;Acc:HGNC:25525]
60. AKTIP ENSGALG00000033378 1991 0.866 - - 0.866 - - - - - - - AKT interacting protein [Source:NCBI gene;Acc:415720]
61. PICK1 ENSGALG00000041823 3843 0.865 - - 0.865 - - - - - - - protein interacting with PRKCA 1 [Source:HGNC Symbol;Acc:HGNC:9394]
62. LRRC42 ENSGALG00000010743 384 0.864 - - 0.864 - - - - - - - leucine rich repeat containing 42 [Source:HGNC Symbol;Acc:HGNC:28792]
63. CENPO ENSGALG00000016609 1699 0.86 - - 0.860 - - - - - - - centromere protein O [Source:NCBI gene;Acc:422014]
64. PCYOX1 ENSGALG00000013878 2200 0.857 - - 0.857 - - - - - - - prenylcysteine oxidase 1 [Source:HGNC Symbol;Acc:HGNC:20588]
65. BBS5 ENSGALG00000009846 344 0.856 - - 0.856 - - - - - - - Bardet-Biedl syndrome 5 [Source:NCBI gene;Acc:424165]
66. GDPD4 ENSGALG00000000690 824 0.856 - - 0.856 - - - - - - - glycerophosphodiester phosphodiesterase domain containing 4 [Source:HGNC Symbol;Acc:HGNC:24849]
67. AMFR ENSGALG00000003107 6560 0.856 - - 0.856 - - - - - - - autocrine motility factor receptor [Source:HGNC Symbol;Acc:HGNC:463]
68. LRRC71 ENSGALG00000027351 695 0.856 - - 0.856 - - - - - - - leucine rich repeat containing 71 [Source:HGNC Symbol;Acc:HGNC:26556]
69. CLEC18B ENSGALG00000027183 284 0.854 - - - - - 0.854 - - - - C-type lectin domain family 18 member B, transcript variant X2
70. AASDHPPT ENSGALG00000027981 1017 0.854 - - 0.854 - - - - - - - aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase [Source:NCBI gene;Acc:418975]
71. AKT3 ENSGALG00000034081 866 0.854 - - 0.854 - - - - - - - AKT serine/threonine kinase 3 [Source:HGNC Symbol;Acc:HGNC:393]
72. DACH1 ENSGALG00000037015 5648 0.853 - - 0.853 - - - - - - - dachshund family transcription factor 1 [Source:NCBI gene;Acc:373935]
73. RRN3 ENSGALG00000041989 3934 0.852 - - 0.852 - - - - - - - RRN3 homolog, RNA polymerase I transcription factor [Source:NCBI gene;Acc:416414]
74. PRUNE PRUNE 452 0.852 - - 0.852 - - - - - - -
75. RPS6KB1 ENSGALG00000005198 169 0.852 - - 0.852 - - - - - - - ribosomal protein S6 kinase B1 [Source:NCBI gene;Acc:417637]
76. APTX ENSGALG00000001954 692 0.851 - - 0.851 - - - - - - - aprataxin [Source:NCBI gene;Acc:395173]
77. PEMT ENSGALG00000004875 4094 0.85 - - 0.850 - - - - - - - phosphatidylethanolamine N-methyltransferase [Source:NCBI gene;Acc:416508]
78. LPCAT3 ENSGALG00000014570 7919 0.85 - - 0.850 - - - - - - - lysophosphatidylcholine acyltransferase 3 [Source:HGNC Symbol;Acc:HGNC:30244]
79. HOXA7 ENSGALG00000026989 6746 0.849 - - 0.849 - - - - - - - homeobox A7 [Source:NCBI gene;Acc:395290]
80. TLE1 ENSGALG00000012575 2047 0.849 - - 0.849 - - - - - - - transducin like enhancer of split 1 [Source:HGNC Symbol;Acc:HGNC:11837]
81. ENSGALG00000004703 ENSGALG00000004703 112 0.848 - - 0.848 - - - - - - -
82. GTF2H2 ENSGALG00000002399 2361 0.848 - - 0.848 - - - - - - - general transcription factor IIH subunit 2, transcript variant X2
83. NUBP1 ENSGALG00000007241 3791 0.848 - - 0.848 - - - - - - - nucleotide binding protein 1 [Source:NCBI gene;Acc:416634]
84. EIF4EBP1 ENSGALG00000003205 89048 0.848 - - - - - - 0.848 - - - eukaryotic translation initiation factor 4E binding protein 1 [Source:HGNC Symbol;Acc:HGNC:3288]
85. KCTD3 ENSGALG00000009678 335 0.848 - - 0.848 - - - - - - - potassium channel tetramerization domain containing 3 [Source:HGNC Symbol;Acc:HGNC:21305]
86. CDC14B ENSGALG00000012627 110 0.848 - - 0.848 - - - - - - - Gallus gallus cell division cycle 14B (CDC14B), mRNA. [Source:RefSeq mRNA;Acc:NM_001318405]
87. AKAP10 ENSGALG00000004679 103 0.848 - - 0.848 - - - - - - - A-kinase anchoring protein 10 [Source:HGNC Symbol;Acc:HGNC:368]
88. TCTN2 ENSGALG00000023683 3596 0.847 - - 0.847 - - - - - - - tectonic family member 2 [Source:HGNC Symbol;Acc:HGNC:25774]
89. CA9 ENSGALG00000021340 1431 0.847 - - 0.847 - - - - - - - carbonic anhydrase 9 [Source:HGNC Symbol;Acc:HGNC:1383]
90. TTPAL ENSGALG00000004244 2734 0.847 - - 0.847 - - - - - - - alpha tocopherol transfer protein like [Source:NCBI gene;Acc:419197]
91. RAD54L2 ENSGALG00000003243 187 0.846 - - 0.846 - - - - - - - RAD54-like 2 (S. cerevisiae) [Source:NCBI gene;Acc:415933]
92. ENSGALG00000020103 ENSGALG00000020103 64 0.845 - - 0.845 - - - - - - -
93. CHAMP1 ENSGALG00000016813 508 0.845 - - 0.845 - - - - - - - chromosome alignment maintaining phosphoprotein 1 [Source:HGNC Symbol;Acc:HGNC:20311]
94. RQCD1 RQCD1 110 0.844 - - 0.844 - - - - - - -
95. UEVLD ENSGALG00000006342 164 0.844 - - 0.844 - - - - - - - UEV and lactate/malate dehyrogenase domains [Source:NCBI gene;Acc:100858486]
96. ENSGALG00000028964 ENSGALG00000028964 46 0.844 - - 0.844 - - - - - - -
97. DBN1 ENSGALG00000033405 216 0.844 - - 0.844 - - - - - - - drebrin 1 [Source:NCBI gene;Acc:396496]
98. TUBGCP3 ENSGALG00000016836 332 0.844 - - 0.844 - - - - - - - tubulin gamma complex associated protein 3 [Source:HGNC Symbol;Acc:HGNC:18598]
99. FAM134C 860 0.843 - - 0.843 - - - - - - - family with sequence similarity 134 member C
100. ITGB4 ENSGALG00000002389 44 0.843 - - 0.843 - - - - - - - integrin subunit beta 4 [Source:HGNC Symbol;Acc:HGNC:6158]

There are 420 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA