Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for SMN

Gene Name Gene ID Reads Annotation
SMN ENSGALG00000002430 7515 survival of motor neuron [Source:NCBI gene;Acc:374025]











Genes with expression patterns similar to SMN

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. SMN ENSGALG00000002430 7515 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 survival of motor neuron [Source:NCBI gene;Acc:374025]
2. HK1 ENSGALG00000004222 10733 1.84 - - - - - - 0.927 0.913 - - hexokinase 1 [Source:NCBI gene;Acc:373889]
3. PAXBP1 ENSGALG00000036833 5573 1.756 - - - - 0.806 - - 0.950 - - PAX3 and PAX7 binding protein 1 [Source:HGNC Symbol;Acc:HGNC:13579]
4. RFC5 ENSGALG00000026517 26113 1.669 - - - - 0.776 - - 0.893 - - replication factor C subunit 5 [Source:HGNC Symbol;Acc:HGNC:9973]
5. MOB2 ENSGALG00000030499 3658 1.642 - - - - - - 0.718 0.924 - - MOB kinase activator 2 [Source:HGNC Symbol;Acc:HGNC:24904]
6. METTL11A METTL11A 11876 1.422 - - - - 0.714 - 0.708 - - -
7. DERL2 ENSGALG00000041844 4509 0.972 - - - - - - 0.972 - - - derlin 2 [Source:HGNC Symbol;Acc:HGNC:17943]
8. ATL2 ENSGALG00000037289 7926 0.966 - - - - - - 0.966 - - - atlastin GTPase 2 [Source:HGNC Symbol;Acc:HGNC:24047]
9. ACVR2B ENSGALG00000006158 8692 0.961 - - - - - - 0.961 - - - activin A receptor type 2B [Source:NCBI gene;Acc:374213]
10. MED14 ENSGALG00000016238 4685 0.958 - - - - - - - 0.958 - - mediator complex subunit 14 [Source:HGNC Symbol;Acc:HGNC:2370]
11. NKRF ENSGALG00000008645 3531 0.955 - - - - - - - 0.955 - - NFKB repressing factor [Source:NCBI gene;Acc:422370]
12. DIABLO ENSGALG00000004412 9499 0.952 - - - - - - - 0.952 - - diablo IAP-binding mitochondrial protein, transcript variant X3
13. VDAC2 ENSGALG00000005002 12592 0.952 - - - - - - - 0.952 - - voltage dependent anion channel 2 [Source:NCBI gene;Acc:395498]
14. SUPT4H1 ENSGALG00000000944 8675 0.951 - - - - - - - 0.951 - - SPT4 homolog, DSIF elongation factor subunit [Source:NCBI gene;Acc:417470]
15. AP1G1 12403 0.951 - - - - - - - 0.951 - - adaptor related protein complex 1 gamma 1 subunit, transcript variant X2
16. NCDN ENSGALG00000002408 6180 0.951 - - - - - - - 0.951 - - neurochondrin [Source:NCBI gene;Acc:419633]
17. CCDC75 CCDC75 4865 0.95 - - - - - - - 0.950 - -
18. KIAA1551 ENSGALG00000045168 3435 0.948 - - - - - - - 0.948 - - KIAA1551, transcript variant X1
19. FAM160B1 ENSGALG00000031404 3153 0.948 - - - - - - - 0.948 - - family with sequence similarity 160 member B1 [Source:HGNC Symbol;Acc:HGNC:29320]
20. MRTO4 ENSGALG00000003991 13642 0.947 - - - - - - - 0.947 - - MRT4 homolog, ribosome maturation factor [Source:NCBI gene;Acc:428192]
21. SURF2 ENSGALG00000003181 3500 0.946 - - - - - - - 0.946 - - surfeit 2 [Source:NCBI gene;Acc:417156]
22. TSPAN5 ENSGALG00000012227 8703 0.946 - - - - - - - 0.946 - - tetraspanin 5 [Source:HGNC Symbol;Acc:HGNC:17753]
23. UBA3 ENSGALG00000013410 6923 0.944 - - - - - - - 0.944 - - ubiquitin like modifier activating enzyme 3 [Source:HGNC Symbol;Acc:HGNC:12470]
24. CNOT2 ENSGALG00000010042 7612 0.942 - - - - - - - 0.942 - - CCR4-NOT transcription complex subunit 2 [Source:NCBI gene;Acc:417851]
25. PANX2 ENSGALG00000000003 2185 0.939 - - - - - - 0.939 - - - pannexin 2 [Source:HGNC Symbol;Acc:HGNC:8600]
26. CCNE1 ENSGALG00000004494 4945 0.938 - - - - - - 0.938 - - - cyclin E1 [Source:NCBI gene;Acc:426117]
27. TADA1L TADA1L 6659 0.938 - - - - - - - 0.938 - -
28. SEMA3C ENSGALG00000040444 5404 0.938 - - - - - - - 0.938 - - semaphorin 3C [Source:NCBI gene;Acc:374090]
29. ACTR3B ENSGALG00000006292 2235 0.937 - - - - - - - 0.937 - - ARP3 actin related protein 3 homolog B, transcript variant X1
30. BRF1 ENSGALG00000011705 3406 0.936 - - - - - - - 0.936 - - BRF1, RNA polymerase III transcription initiation factor subunit [Source:HGNC Symbol;Acc:HGNC:11551]
31. C5H15ORF57 C5H15ORF57 4113 0.936 - - - - - - - 0.936 - -
32. CLIC4 ENSGALG00000001262 11497 0.935 - - - - - - - 0.935 - - chloride intracellular channel 4 [Source:HGNC Symbol;Acc:HGNC:13518]
33. TRAPPC12 ENSGALG00000016387 2593 0.934 - - - - - - - 0.934 - - trafficking protein particle complex 12 [Source:HGNC Symbol;Acc:HGNC:24284]
34. SECISBP2 ENSGALG00000010694 6990 0.931 - - - - - - - 0.931 - - SECIS binding protein 2 [Source:HGNC Symbol;Acc:HGNC:30972]
35. POLR1E ENSGALG00000005395 8953 0.929 - - - - - - - 0.929 - - RNA polymerase I subunit E [Source:HGNC Symbol;Acc:HGNC:17631]
36. LOC776067 ENSGALG00000016808 9164 0.928 - - - - - - - 0.928 - - E3 SUMO-protein ligase RanBP2-like, transcript variant X50
37. MMP17 3885 0.927 - - - - - - - 0.927 - - matrix metallopeptidase 17
38. HABP4 ENSGALG00000012628 2894 0.926 - - - - - - - 0.926 - - hyaluronan binding protein 4 [Source:NCBI gene;Acc:395444]
39. ABTB1 ENSGALG00000005999 2446 0.926 - - - - - - - 0.926 - - ankyrin repeat and BTB domain containing 1 [Source:NCBI gene;Acc:416026]
40. FBXL7 ENSGALG00000031947 2480 0.926 - - - - - - - 0.926 - - F-box and leucine rich repeat protein 7 [Source:HGNC Symbol;Acc:HGNC:13604]
41. ST14 ENSGALG00000001331 1655 0.926 - - - - - - - 0.926 - - suppression of tumorigenicity 14 [Source:HGNC Symbol;Acc:HGNC:11344]
42. NRD1 NRD1 10827 0.925 - - - - - - - 0.925 - -
43. KIF3B ENSGALG00000006604 2968 0.924 - - - - - - - 0.924 - - kinesin family member 3B [Source:NCBI gene;Acc:419284]
44. WBP4 ENSGALG00000016949 5858 0.922 - - - - - - - 0.922 - - WW domain binding protein 4 [Source:NCBI gene;Acc:418829]
45. RBM34 ENSGALG00000029915 5618 0.922 - - - - - - - 0.922 - - RNA binding motif protein 34 [Source:HGNC Symbol;Acc:HGNC:28965]
46. SLC37A4 ENSGALG00000007716 2263 0.922 - - - - - - - 0.922 - - solute carrier family 37 member 4 [Source:HGNC Symbol;Acc:HGNC:4061]
47. GTSE1 ENSGALG00000004897 2865 0.921 - - - - - - - 0.921 - - G2 and S-phase expressed 1 [Source:NCBI gene;Acc:425204]
48. COQ5 ENSGALG00000007185 5614 0.921 - - - - - - - 0.921 - - coenzyme Q5, methyltransferase [Source:NCBI gene;Acc:416975]
49. ZFP91 ENSGALG00000007287 13681 0.921 - - - - - - - 0.921 - - ZFP91 zinc finger protein
50. CAMK2G ENSGALG00000005088 5037 0.921 - - - - - - - 0.921 - - calcium/calmodulin dependent protein kinase II gamma [Source:HGNC Symbol;Acc:HGNC:1463]
51. PDHX ENSGALG00000033753 2799 0.921 - - - - - - - 0.921 - - pyruvate dehydrogenase complex component X [Source:NCBI gene;Acc:423154]
52. TTC17 ENSGALG00000039558 3301 0.921 - - - - - - - 0.921 - - tetratricopeptide repeat domain 17
53. IBA57 ENSGALG00000005328 4362 0.921 - - - - - - - 0.921 - - IBA57 homolog, iron-sulfur cluster assembly [Source:NCBI gene;Acc:420396]
54. SLC35F6 ENSGALG00000016589 5172 0.92 - - - - - - - 0.920 - - solute carrier family 35 member F6 [Source:HGNC Symbol;Acc:HGNC:26055]
55. NCBP1 ENSGALG00000002087 8907 0.92 - - - - - - - 0.920 - - nuclear cap binding protein subunit 1 [Source:NCBI gene;Acc:427379]
56. PHF14 ENSGALG00000038041 13687 0.92 - - - - - - 0.920 - - - PHD finger protein 14 [Source:NCBI gene;Acc:420583]
57. ATP6V0E2 ENSGALG00000020754 2648 0.92 - - - - - - - 0.920 - - ATPase H+ transporting V0 subunit e2 [Source:NCBI gene;Acc:769770]
58. TLCD1 ENSGALG00000003973 17569 0.919 - - - - - - - 0.919 - - TLC domain containing 1 [Source:NCBI gene;Acc:417575]
59. MED20 ENSGALG00000003474 4583 0.919 - - - - - - - 0.919 - - mediator complex subunit 20 [Source:NCBI gene;Acc:419926]
60. CYB5R3 ENSGALG00000014122 7664 0.918 - - - - - - - 0.918 - - cytochrome b5 reductase 3 [Source:NCBI gene;Acc:418220]
61. ENSGALG00000005785 ENSGALG00000005785 1570 0.917 - - - - - - - 0.917 - -
62. ZC3H11A ENSGALG00000000541 2712 0.916 - - - - - - - 0.916 - - zinc finger CCCH-type containing 11A [Source:NCBI gene;Acc:421172]
63. PDCD7 ENSGALG00000021027 3807 0.916 - - - - - - - 0.916 - - programmed cell death 7 [Source:HGNC Symbol;Acc:HGNC:8767]
64. PCBD1 ENSGALG00000027835 18019 0.916 - - - - - - 0.916 - - - pterin-4 alpha-carbinolamine dehydratase 1 [Source:NCBI gene;Acc:395729]
65. CLASP2 ENSGALG00000032647 1821 0.915 - - - - - - - 0.915 - - cytoplasmic linker associated protein 2 [Source:NCBI gene;Acc:420724]
66. ECHDC3 ENSGALG00000006690 1299 0.915 - - - - - - - 0.915 - - enoyl-CoA hydratase domain containing 3 [Source:NCBI gene;Acc:419098]
67. SIAH2 ENSGALG00000010395 2126 0.915 - - - - - - - 0.915 - - siah E3 ubiquitin protein ligase 2 [Source:HGNC Symbol;Acc:HGNC:10858]
68. POLDIP3 ENSGALG00000011863 6424 0.914 - - - - - - - 0.914 - - DNA polymerase delta interacting protein 3 [Source:NCBI gene;Acc:417974]
69. DUSP19 ENSGALG00000043268 5543 0.913 - - - - - - 0.913 - - - dual specificity phosphatase 19 [Source:HGNC Symbol;Acc:HGNC:18894]
70. CDC37L1 ENSGALG00000014448 2283 0.911 - - - - - - - 0.911 - - cell division cycle 37 like 1 [Source:HGNC Symbol;Acc:HGNC:17179]
71. ASAP2 ENSGALG00000016419 1393 0.91 - - - - - - - 0.910 - - ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 [Source:HGNC Symbol;Acc:HGNC:2721]
72. IDS ENSGALG00000009154 1177 0.91 - - - - - - - 0.910 - - iduronate 2-sulfatase [Source:NCBI gene;Acc:422392]
73. PNPT1 ENSGALG00000043545 1306 0.909 - - - - - - - 0.909 - - polyribonucleotide nucleotidyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:23166]
74. FNBP1L ENSGALG00000005850 9219 0.909 - - - - - - - 0.909 - - formin binding protein 1 like [Source:HGNC Symbol;Acc:HGNC:20851]
75. TBC1D19 ENSGALG00000029673 1868 0.909 - - - - - - - 0.909 - - TBC1 domain family member 19 [Source:HGNC Symbol;Acc:HGNC:25624]
76. SENP2 ENSGALG00000031128 1162 0.909 - - - - - - - 0.909 - - SUMO specific peptidase 2 [Source:HGNC Symbol;Acc:HGNC:23116]
77. CCNI ENSGALG00000011457 3203 0.908 - - - - - - - 0.908 - - cyclin I [Source:HGNC Symbol;Acc:HGNC:1595]
78. SLC4A3 ENSGALG00000011224 2161 0.908 - - - - - - - 0.908 - - solute carrier family 4 member 3 [Source:HGNC Symbol;Acc:HGNC:11029]
79. GPR155 ENSGALG00000014209 1281 0.906 - - - - - - - 0.906 - - G protein-coupled receptor 155 [Source:HGNC Symbol;Acc:HGNC:22951]
80. THAP4 ENSGALG00000006283 1707 0.906 - - - - - - - 0.906 - - THAP domain containing 4 [Source:HGNC Symbol;Acc:HGNC:23187]
81. BOC ENSGALG00000015152 4868 0.905 - - - - - - - 0.905 - - BOC cell adhesion associated, oncogene regulated [Source:HGNC Symbol;Acc:HGNC:17173]
82. LMO4 ENSGALG00000006252 3686 0.904 - - - - - - - 0.904 - - LIM domain only 4 [Source:NCBI gene;Acc:373901]
83. MAN1A1 ENSGALG00000014878 1061 0.903 - - - - - - - 0.903 - - mannosidase alpha class 1A member 1 [Source:HGNC Symbol;Acc:HGNC:6821]
84. TBC1D16 ENSGALG00000007054 2324 0.903 - - - - - - - 0.903 - - TBC1 domain family member 16 [Source:HGNC Symbol;Acc:HGNC:28356]
85. ENSGALG00000025773 ENSGALG00000025773 977 0.9 - - - - - - - 0.900 - -
86. ATP2A2 ENSGALG00000032287 12734 0.9 - - - - - - - 0.900 - - ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2 [Source:NCBI gene;Acc:396446]
87. C7H2ORF76 ENSGALG00000012113 1947 0.899 - - - - - - - 0.899 - - chromosome 7 open reading frame, human C2orf76 [Source:NCBI gene;Acc:424274]
88. NFS1 ENSGALG00000001568 7113 0.897 - - - - - - 0.897 - - - NFS1, cysteine desulfurase [Source:NCBI gene;Acc:419133]
89. RTN4IP1 ENSGALG00000015343 4366 0.896 - - - - - - 0.896 - - - reticulon 4 interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:18647]
90. GOT1 ENSGALG00000007484 21664 0.896 - - - - - - - 0.896 - - glutamic-oxaloacetic transaminase 1 [Source:NCBI gene;Acc:396261]
91. C16orf93 C16orf93 3351 0.896 - - - - - - - 0.896 - -
92. N4BP2L1 ENSGALG00000017072 1371 0.895 - - - - - - - 0.895 - - NEDD4 binding protein 2 like 1, transcript variant X2
93. LRRC42 ENSGALG00000010743 384 0.894 - - - - - - - 0.894 - - leucine rich repeat containing 42 [Source:HGNC Symbol;Acc:HGNC:28792]
94. NGFR ENSGALG00000035950 13452 0.894 - - - - - - - 0.894 - - nerve growth factor receptor [Source:NCBI gene;Acc:425805]
95. ALDH6 ALDH6 771 0.894 - - - - - - - 0.894 - -
96. xcc-b100_1894L ENSGALG00000007564 462 0.892 - - - - - - - 0.892 - - UPF0061 protein xcc-b100_1894-like
97. BIN1 ENSGALG00000011541 2273 0.891 - - - - - - - 0.891 - - bridging integrator 1 [Source:NCBI gene;Acc:424228]
98. GMFB ENSGALG00000012208 894 0.89 - - - - - - - 0.890 - - glia maturation factor beta [Source:NCBI gene;Acc:423560]
99. ENSGALG00000026309 ENSGALG00000026309 360 0.889 - - - - - - - 0.889 - -
100. CLEC3B ENSGALG00000030969 363 0.889 - - - - - - - 0.889 - - C-type lectin domain family 3 member B [Source:NCBI gene;Acc:395386]

There are 384 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA