Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for SMIM12

Gene Name Gene ID Reads Annotation
SMIM12 ENSGALG00000030261 5860 small integral membrane protein 12 [Source:NCBI gene;Acc:100858028]











Genes with expression patterns similar to SMIM12

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. SMIM12 ENSGALG00000030261 5860 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 small integral membrane protein 12 [Source:NCBI gene;Acc:100858028]
2. ZC3H3 ENSGALG00000043265 1638 1.73 - - - - - - 0.768 0.962 - - zinc finger CCCH-type containing 3 [Source:NCBI gene;Acc:430349]
3. PYCR1 ENSGALG00000007300 7987 1.703 - - 0.749 - - - - 0.954 - - pyrroline-5-carboxylate reductase 1 [Source:NCBI gene;Acc:769203]
4. CHMP6 ENSGALG00000026428 18026 1.687 - - - - - - 0.721 0.966 - - charged multivesicular body protein 6 [Source:NCBI gene;Acc:428673]
5. PAN3 ENSGALG00000017092 5387 1.6 - - - - - - - 0.822 0.778 - poly(A) specific ribonuclease subunit PAN3 [Source:HGNC Symbol;Acc:HGNC:29991]
6. MED28 ENSGALG00000007138 7686 1.567 - - - - - - 0.753 0.814 - - mediator complex subunit 28 [Source:HGNC Symbol;Acc:HGNC:24628]
7. CYB5A ENSGALG00000013708 8287 1.541 - - 0.827 - - - 0.714 - - - cytochrome b5 type A [Source:NCBI gene;Acc:414798]
8. GATD3A ENSGALG00000016918 24760 1.519 - - - - - - 0.767 - 0.752 - glutamine amidotransferase like class 1 domain containing 3A [Source:NCBI gene;Acc:418811]
9. SPECC1 ENSGALG00000004400 611 1.509 - - - 0.709 - - - - 0.800 - sperm antigen with calponin homology and coiled-coil domains 1 [Source:HGNC Symbol;Acc:HGNC:30615]
10. KIF1B ENSGALG00000002726 461 1.499 - - - 0.776 - - - - 0.723 - kinesin family member 1B [Source:HGNC Symbol;Acc:HGNC:16636]
11. HNRNPD ENSGALG00000011184 10686 1.493 - - - - - - 0.702 0.791 - - heterogeneous nuclear ribonucleoprotein D [Source:NCBI gene;Acc:422602]
12. IARS ENSGALG00000004813 12936 1.429 - - - - - - 0.702 - 0.727 - isoleucyl-tRNA synthetase [Source:HGNC Symbol;Acc:HGNC:5330]
13. CARS2 ENSGALG00000016847 3814 0.977 - - - - - - - 0.977 - - cysteinyl-tRNA synthetase 2, mitochondrial [Source:HGNC Symbol;Acc:HGNC:25695]
14. TMEM59 ENSGALG00000010746 4669 0.974 - - - - - - - 0.974 - - transmembrane protein 59 [Source:NCBI gene;Acc:424656]
15. MTMR9 ENSGALG00000016649 2055 0.974 - - - - - - - 0.974 - - myotubularin related protein 9 [Source:NCBI gene;Acc:422033]
16. SMC6 ENSGALG00000016467 3321 0.973 - - - - - - - 0.973 - - Gallus gallus structural maintenance of chromosomes 6 (SMC6), mRNA. [Source:RefSeq mRNA;Acc:NM_001321614]
17. TCEA1 ENSGALG00000015274 2706 0.972 - - - - - - - 0.972 - - transcription elongation factor A1 [Source:NCBI gene;Acc:421119]
18. SLC25A1 ENSGALG00000041760 4744 0.971 - - - - - - - 0.971 - - solute carrier family 25 member 1, transcript variant X2
19. HDGFL2 ENSGALG00000027068 1300 0.971 - - - - - - - 0.971 - - HDGF like 2 [Source:NCBI gene;Acc:772302]
20. TRMT44 ENSGALG00000015594 1490 0.971 - - - - - - - 0.971 - - tRNA methyltransferase 44 homolog [Source:HGNC Symbol;Acc:HGNC:26653]
21. BTG1L ENSGALG00000004676 2293 0.971 - - - - - - - 0.971 - - protein BTG1-like
22. AMMECR1L ENSGALG00000026728 2134 0.97 - - - - - - - 0.970 - - AMMECR1 like [Source:HGNC Symbol;Acc:HGNC:28658]
23. DNAJA1 ENSGALG00000023066 3820 0.97 - - - - - - - 0.970 - - DnaJ heat shock protein family (Hsp40) member A1 [Source:NCBI gene;Acc:427376]
24. REV3L ENSGALG00000015033 1917 0.969 - - - - - - - 0.969 - - REV3 like, DNA directed polymerase zeta catalytic subunit [Source:HGNC Symbol;Acc:HGNC:9968]
25. SMARCC1 ENSGALG00000032642 4842 0.969 - - - - - - - 0.969 - - SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1 [Source:HGNC Symbol;Acc:HGNC:11104]
26. SRP72 ENSGALG00000011403 13666 0.968 - - - - - - - 0.968 - - signal recognition particle 72 [Source:NCBI gene;Acc:422626]
27. ALG9 ENSGALG00000021174 745 0.968 - - - - - - - 0.968 - - ALG9, alpha-1,2-mannosyltransferase, transcript variant X5
28. RNF214 ENSGALG00000036993 3729 0.967 - - - - - - - 0.967 - - ring finger protein 214 [Source:HGNC Symbol;Acc:HGNC:25335]
29. TRIM24 ENSGALG00000012823 2725 0.967 - - - - - - - 0.967 - - tripartite motif containing 24 [Source:HGNC Symbol;Acc:HGNC:11812]
30. RP9 ENSGALG00000035453 1186 0.967 - - - - - - - 0.967 - - retinitis pigmentosa 9 (autosomal dominant)
31. KDM4A ENSGALG00000010074 7219 0.966 - - - - - - - 0.966 - - lysine demethylase 4A
32. PEO1 PEO1 6747 0.966 - - - - - - - 0.966 - -
33. MYH15 ENSGALG00000015358 6304 0.966 - - - - - - - 0.966 - - myosin, heavy chain 15 [Source:NCBI gene;Acc:395534]
34. GTDC1 ENSGALG00000012424 1446 0.966 - - - - - - - 0.966 - - glycosyltransferase like domain containing 1 [Source:NCBI gene;Acc:424304]
35. PKP4 ENSGALG00000012561 3087 0.966 - - - - - - - 0.966 - - plakophilin 4 [Source:NCBI gene;Acc:424328]
36. NEMF ENSGALG00000012263 2250 0.966 - - - - - - - 0.966 - - nuclear export mediator factor [Source:NCBI gene;Acc:428926]
37. UCK2 ENSGALG00000003510 2512 0.966 - - - - - - - 0.966 - - uridine-cytidine kinase 2 [Source:NCBI gene;Acc:424406]
38. STX18 ENSGALG00000015012 1489 0.966 - - - - - - - 0.966 - - syntaxin 18 [Source:NCBI gene;Acc:422848]
39. MAST2 ENSGALG00000010313 2975 0.966 - - - - - - - 0.966 - - microtubule associated serine/threonine kinase 2 [Source:HGNC Symbol;Acc:HGNC:19035]
40. APOOL ENSGALG00000006978 1953 0.965 - - - - - - - 0.965 - - apolipoprotein O like [Source:NCBI gene;Acc:422271]
41. DCTN5 ENSGALG00000006088 3113 0.965 - - - - - - - 0.965 - - dynactin subunit 5 [Source:NCBI gene;Acc:416574]
42. gga-mir-1772 ENSGALG00000025300 2892 0.965 - - - - - - - 0.965 - - gga-mir-1772 [Source:miRBase;Acc:MI0007515]
43. BRCC3 ENSGALG00000005383 4844 0.965 - - - - - - - 0.965 - - BRCA1/BRCA2-containing complex subunit 3 [Source:HGNC Symbol;Acc:HGNC:24185]
44. ABCA3 ENSGALG00000037837 1606 0.965 - - - - - - - 0.965 - - ATP binding cassette subfamily A member 3 [Source:HGNC Symbol;Acc:HGNC:33]
45. ITGA9 ENSGALG00000029378 415 0.964 - - - - - - - 0.964 - - integrin subunit alpha 9 [Source:NCBI gene;Acc:420757]
46. ADIPOR1 ENSGALG00000000094 1862 0.964 - - - - - - - 0.964 - - adiponectin receptor 1 [Source:NCBI gene;Acc:421148]
47. TFEB ENSGALG00000039878 881 0.964 - - - - - - - 0.964 - - transcription factor EB [Source:NCBI gene;Acc:419922]
48. C7orf25 ENSGALG00000040161 694 0.964 - - - - - - - 0.964 - - chromosome 7 open reading frame 25 [Source:HGNC Symbol;Acc:HGNC:21703]
49. GOLGB1 ENSGALG00000041494 2376 0.963 - - - - - - - 0.963 - - golgin B1 [Source:HGNC Symbol;Acc:HGNC:4429]
50. CHAF1A ENSGALG00000001126 6506 0.963 - - - - - - - 0.963 - - chromatin assembly factor 1 subunit A [Source:NCBI gene;Acc:770217]
51. TMEM57 ENSGALG00000001067 3367 0.963 - - - - - - - 0.963 - - transmembrane protein 57 [Source:NCBI gene;Acc:419590]
52. PNISR ENSGALG00000015483 7711 0.963 - - - - - - - 0.963 - - PNN interacting serine and arginine rich protein [Source:NCBI gene;Acc:421796]
53. REXO1 ENSGALG00000001043 3179 0.963 - - - - - - - 0.963 - - RNA exonuclease 1 homolog [Source:HGNC Symbol;Acc:HGNC:24616]
54. CC2D2A ENSGALG00000014514 1180 0.963 - - - - - - - 0.963 - - coiled-coil and C2 domain containing 2A [Source:HGNC Symbol;Acc:HGNC:29253]
55. EFHD1 ENSGALG00000001428 2831 0.962 - - - - - - - 0.962 - - EF-hand domain family member D1 [Source:NCBI gene;Acc:424741]
56. ARFRP1 ENSGALG00000006101 3743 0.962 - - - - - - - 0.962 - - ADP ribosylation factor related protein 1 [Source:HGNC Symbol;Acc:HGNC:662]
57. ARRDC4 ENSGALG00000007012 1039 0.962 - - - - - - - 0.962 - - arrestin domain containing 4 [Source:HGNC Symbol;Acc:HGNC:28087]
58. DEPDC7 ENSGALG00000011681 1181 0.962 - - - - - - - 0.962 - - DEP domain containing 7 [Source:NCBI gene;Acc:421593]
59. NET1 ENSGALG00000008437 9850 0.961 - - - - - - - 0.961 - - neuroepithelial cell transforming 1 [Source:NCBI gene;Acc:416693]
60. INOS INOS 313 0.961 - - - - - - - 0.961 - -
61. C5orf24 ENSGALG00000006371 1573 0.961 - - - - - - - 0.961 - - chromosome 5 open reading frame 24 [Source:HGNC Symbol;Acc:HGNC:26746]
62. KHDRBS1 ENSGALG00000003272 4249 0.961 - - - - - - - 0.961 - - KH RNA binding domain containing, signal transduction associated 1 [Source:NCBI gene;Acc:374071]
63. H3-I H3-I 1498 0.961 - - - - - - - 0.961 - -
64. DUSP14 ENSGALG00000027641 3662 0.961 - - - - - - - 0.961 - - dual specificity phosphatase 14 [Source:HGNC Symbol;Acc:HGNC:17007]
65. LIG3 ENSGALG00000002288 7198 0.961 - - - - - - - 0.961 - - DNA ligase 3 [Source:NCBI gene;Acc:417530]
66. RGS17 ENSGALG00000026034 707 0.96 - - - - - - - 0.960 - - regulator of G protein signaling 17 [Source:NCBI gene;Acc:395645]
67. MTERFD1 MTERFD1 3640 0.96 - - - - - - - 0.960 - -
68. ATP8B4 ENSGALG00000002326 456 0.96 - - - - - - - 0.960 - - ATPase phospholipid transporting 8B4 (putative), transcript variant X4
69. RGS9 ENSGALG00000029610 112 0.96 - - - - - - - 0.960 - - regulator of G protein signaling 9 [Source:HGNC Symbol;Acc:HGNC:10004]
70. TRPC6 ENSGALG00000029416 281 0.96 - - - - - - - 0.960 - - transient receptor potential cation channel subfamily C member 6 [Source:HGNC Symbol;Acc:HGNC:12338]
71. PHLPP1 ENSGALG00000012888 398 0.959 - - - - - - - 0.959 - - PH domain and leucine rich repeat protein phosphatase 1 [Source:HGNC Symbol;Acc:HGNC:20610]
72. ACSL1 ENSGALG00000010628 2560 0.959 - - - - - - - 0.959 - - acyl-CoA synthetase long chain family member 1 [Source:NCBI gene;Acc:422547]
73. FIGN ENSGALG00000011069 311 0.958 - - - - - - - 0.958 - - fidgetin, microtubule severing factor [Source:HGNC Symbol;Acc:HGNC:13285]
74. SNAP29 ENSGALG00000040128 3581 0.958 - - - - - - - 0.958 - - synaptosome associated protein 29 [Source:NCBI gene;Acc:416766]
75. FGF18 ENSGALG00000002203 551 0.957 - - - - - - - 0.957 - - fibroblast growth factor 18 [Source:NCBI gene;Acc:395453]
76. IRX1 ENSGALG00000030991 1474 0.957 - - - - - - - 0.957 - - iroquois homeobox 1 [Source:NCBI gene;Acc:374185]
77. UBAC2 ENSGALG00000016880 1343 0.957 - - - - - - - 0.957 - - UBA domain containing 2 [Source:NCBI gene;Acc:418778]
78. NSRP1 ENSGALG00000004186 1683 0.957 - - - - - - - 0.957 - - nuclear speckle splicing regulatory protein 1 [Source:HGNC Symbol;Acc:HGNC:25305]
79. BCLAF1 ENSGALG00000013935 7596 0.955 - - - - - - - 0.955 - - BCL2 associated transcription factor 1 [Source:HGNC Symbol;Acc:HGNC:16863]
80. NR2F2 ENSGALG00000007000 4911 0.955 - - - - - - - 0.955 - - nuclear receptor subfamily 2 group F member 2 [Source:NCBI gene;Acc:386585]
81. NGEF ENSGALG00000036327 1048 0.955 - - - - - - - 0.955 - - neuronal guanine nucleotide exchange factor [Source:NCBI gene;Acc:424744]
82. VGLL4 ENSGALG00000004937 3762 0.954 - - - - - - - 0.954 - - vestigial like family member 4 [Source:NCBI gene;Acc:415962]
83. RDM1 ENSGALG00000000243 3388 0.953 - - - - - - - 0.953 - - RAD52 motif containing 1 [Source:NCBI gene;Acc:395228]
84. CAMSAP2 ENSGALG00000002145 6109 0.953 - - - - - - - 0.953 - - calmodulin regulated spectrin associated protein family member 2 [Source:HGNC Symbol;Acc:HGNC:29188]
85. LATS2 4776 0.953 - - - - - - - 0.953 - - large tumor suppressor kinase 2
86. PPCS ENSGALG00000004882 5759 0.953 - - - - - - - 0.953 - - phosphopantothenoylcysteine synthetase [Source:HGNC Symbol;Acc:HGNC:25686]
87. TXNDC5 ENSGALG00000012784 4678 0.953 - - - - - - - 0.953 - - thioredoxin domain containing 5 [Source:NCBI gene;Acc:420867]
88. CEP170 ENSGALG00000010733 4177 0.953 - - - - - - - 0.953 - - centrosomal protein 170 [Source:HGNC Symbol;Acc:HGNC:28920]
89. ENSGALG00000014190 ENSGALG00000014190 5735 0.953 - - - - - - - 0.953 - -
90. EDEM1 ENSGALG00000008320 3117 0.953 - - - - - - - 0.953 - - ER degradation enhancing alpha-mannosidase like protein 1 [Source:NCBI gene;Acc:416110]
91. gga-mir-1306 ENSGALG00000025271 1231 0.952 - - - - - - - 0.952 - - gga-mir-1306 [Source:miRBase;Acc:MI0007057]
92. WASH1 WASH1 3240 0.952 - - - - - - - 0.952 - -
93. METTL22 ENSGALG00000033603 696 0.952 - - - - - - - 0.952 - - methyltransferase like 22 [Source:NCBI gene;Acc:425865]
94. NUP210L 370 0.95 - - - - - - - 0.950 - - nucleoporin 210 like
95. ARHGEF4 ENSGALG00000002193 558 0.948 - - - - - - - 0.948 - - Rho guanine nucleotide exchange factor 4 [Source:HGNC Symbol;Acc:HGNC:684]
96. PIGK ENSGALG00000009015 7942 0.948 - - - - - - - 0.948 - - phosphatidylinositol glycan anchor biosynthesis class K [Source:NCBI gene;Acc:424556]
97. USP32 ENSGALG00000005350 1686 0.945 - - - - - - - 0.945 - - ubiquitin specific peptidase 32, transcript variant X2
98. FGFR1OP ENSGALG00000011423 2418 0.945 - - - - - - - 0.945 - - FGFR1 oncogene partner [Source:HGNC Symbol;Acc:HGNC:17012]
99. GLG1 ENSGALG00000039818 6221 0.945 - - - - - - - 0.945 - - golgi glycoprotein 1 [Source:NCBI gene;Acc:396492]
100. VCAN ENSGALG00000015624 11489 0.944 - - - - - - - 0.944 - - versican [Source:NCBI gene;Acc:395565]

There are 386 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA