Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for SMG9

Gene Name Gene ID Reads Annotation
SMG9 ENSDARG00000076627 525 smg9 nonsense mediated mRNA decay factor [Source:ZFIN;Acc:ZDB-GENE-030131-9385]










Genes with expression patterns similar to SMG9

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. SMG9 ENSDARG00000076627 525 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 smg9 nonsense mediated mRNA decay factor [Source:ZFIN;Acc:ZDB-GENE-030131-9385]
2. proza ENSDARG00000037783, ENSDARG00000116864 500 1.624 - 0.888 - - - 0.736 - - - protein Z, vitamin K-dependent plasma glycoprotein a [Source:ZFIN;Acc:ZDB-GENE-061013-403]
3. exd2 ENSDARG00000016117 342 1.588 - 0.824 - - - - - 0.764 - exonuclease 3'-5' domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-030131-6387]
4. si:ch211-153l6.4 si:ch211-153l6.4 45 1.514 0.730 0.784 - - - - - - -
5. elp4 ENSDARG00000008852 253 1.514 0.806 0.708 - - - - - - - elongator acetyltransferase complex subunit 4 [Source:ZFIN;Acc:ZDB-GENE-050417-114]
6. C9H2orf49 C9H2orf49 258 1.511 0.742 - - - - 0.769 - - -
7. crfb16 ENSDARG00000075181 40 1.507 0.772 - - - - - - 0.735 - cytokine receptor family member B16 [Source:ZFIN;Acc:ZDB-GENE-071120-9]
8. hmga1b ENSDARG00000070951 377 1.494 - 0.788 - - - - - 0.706 - high mobility group AT-hook 1b [Source:ZFIN;Acc:ZDB-GENE-061013-204]
9. ddx11 ENSDARG00000011072 325 1.494 - 0.782 - - - - - 0.712 - DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 [Source:ZFIN;Acc:ZDB-GENE-041114-191]
10. Mar-03 Mar-03 44 1.493 - 0.740 - - - - - 0.753 -
11. AL954696.1 ENSDARG00000078442 768 1.491 - 0.741 - - - 0.750 - - - NOP9 nucleolar protein [Source:NCBI gene;Acc:100332577]
12. CLSPN 2054 1.478 - 0.768 - - - - - 0.710 - claspin
13. ABCC3 ENSDARG00000096662 15 1.474 - 0.740 - - - - - 0.734 - ATP-binding cassette, sub-family C (CFTR/MRP), member 3 [Source:ZFIN;Acc:ZDB-GENE-050517-16]
14. si:ch73-257c13.2 ENSDARG00000074305 197 1.473 - 0.729 - - - - - 0.744 - si:ch73-257c13.2 [Source:ZFIN;Acc:ZDB-GENE-081104-269]
15. fam175a fam175a 224 1.469 - 0.724 - - - - - 0.745 -
16. GLIS2 GLIS2 141 1.456 - - - - - 0.709 - 0.747 -
17. ranbp3 ranbp3 1009 1.455 - 0.745 - - - 0.710 - - -
18. spata17 ENSDARG00000054414 64 1.452 - 0.720 - - - - - 0.732 - spermatogenesis associated 17 [Source:ZFIN;Acc:ZDB-GENE-111214-1]
19. C8H17orf59 C8H17orf59 494 1.451 0.702 - - - - 0.749 - - -
20. KLHL29_1 KLHL29_1 158 1.443 - 0.740 - - - - - 0.703 -
21. baiap2a ENSDARG00000062799 231 1.442 - - - - - 0.707 - 0.735 - BAI1-associated protein 2a [Source:ZFIN;Acc:ZDB-GENE-060421-2756]
22. TIMM21 ENSDARG00000071594 722 0.933 - 0.933 - - - - - - - translocase of inner mitochondrial membrane 21 [Source:HGNC Symbol;Acc:HGNC:25010]
23. mettl16 ENSDARG00000055838 818 0.906 0.906 - - - - - - - - methyltransferase like 16 [Source:ZFIN;Acc:ZDB-GENE-040801-130]
24. myf5 ENSDARG00000007277 1051 0.894 - 0.894 - - - - - - - myogenic factor 5 [Source:ZFIN;Acc:ZDB-GENE-000616-6]
25. AL929222.1 ENSDARG00000096994 1293 0.886 - 0.886 - - - - - - -
26. CABZ01073417.1 CABZ01073417.1 232 0.883 0.883 - - - - - - - -
27. magi2 magi2 301 0.876 0.876 - - - - - - - -
28. dachb ENSDARG00000034785, ENSDARG00000111845 109 0.874 - 0.874 - - - - - - - dachshund b [Source:ZFIN;Acc:ZDB-GENE-020402-4]
29. BCR ENSDARG00000079286 389 0.868 0.868 - - - - - - - - breakpoint cluster region [Source:ZFIN;Acc:ZDB-GENE-040724-43]
30. ldb2b ENSDARG00000034896, ENSDARG00000113987, ENSDARG00000116485 976 0.867 - 0.867 - - - - - - - LIM domain binding 2b [Source:ZFIN;Acc:ZDB-GENE-990415-137]
31. thtpa ENSDARG00000063049 286 0.866 - 0.866 - - - - - - - thiamine triphosphatase [Source:ZFIN;Acc:ZDB-GENE-070502-2]
32. zgc:174563 zgc:174563 198 0.862 - 0.862 - - - - - - -
33. tmem187 ENSDARG00000051989 136 0.849 0.849 - - - - - - - - transmembrane protein 187 [Source:ZFIN;Acc:ZDB-GENE-090313-366]
34. fam98b ENSDARG00000060068, ENSDARG00000113494 67 0.848 - 0.848 - - - - - - - family with sequence similarity 98, member B [Source:ZFIN;Acc:ZDB-GENE-061201-63]
35. cdkn2d ENSDARG00000094176 190 0.848 - 0.848 - - - - - - - cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4) [Source:ZFIN;Acc:ZDB-GENE-110316-1]
36. pdlim5a ENSDARG00000101777 357 0.847 - 0.847 - - - - - - - PDZ and LIM domain 5a [Source:ZFIN;Acc:ZDB-GENE-040718-401]
37. gemin8 ENSDARG00000053496, ENSDARG00000115240 1214 0.847 - 0.847 - - - - - - - gem (nuclear organelle) associated protein 8 [Source:ZFIN;Acc:ZDB-GENE-041114-189]
38. tbc1d12b ENSDARG00000073771 787 0.845 - - - - - 0.845 - - - TBC1 domain family, member 12b [Source:ZFIN;Acc:ZDB-GENE-121214-108]
39. si:dkey-187a12.4 127 0.845 - 0.845 - - - - - - - si:dkey-187a12.4
40. sema4ab ENSDARG00000062352 409 0.844 0.844 - - - - - - - - sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4Ab [Source:ZFIN;Acc:ZDB-GENE-060503-363]
41. si:dkey-26g8.10 si:dkey-26g8.10 100 0.844 - 0.844 - - - - - - -
42. CU302376.1 CU302376.1 141 0.841 0.841 - - - - - - - -
43. marveld3 ENSDARG00000099654 113 0.837 - 0.837 - - - - - - - MARVEL domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-040426-1641]
44. nol8 ENSDARG00000044143 425 0.836 - - - - - 0.836 - - - nucleolar protein 8 [Source:ZFIN;Acc:ZDB-GENE-050208-491]
45. ccnl1b ENSDARG00000012140 1639 0.836 0.836 - - - - - - - - cyclin L1b [Source:ZFIN;Acc:ZDB-GENE-030131-4813]
46. CR855307.1 ENSDARG00000099628 338 0.836 - - - - - - - 0.836 -
47. scn4bb ENSDARG00000060319, ENSDARG00000112427 63 0.836 - 0.836 - - - - - - - sodium channel, voltage-gated, type IV, beta b [Source:ZFIN;Acc:ZDB-GENE-031116-71]
48. azi1 azi1 507 0.835 - 0.835 - - - - - - -
49. fzd3a ENSDARG00000021664 1958 0.835 - 0.835 - - - - - - - frizzled class receptor 3a [Source:ZFIN;Acc:ZDB-GENE-990415-225]
50. dopey1 438 0.834 - 0.834 - - - - - - - dopey family member 1, transcript variant X4
51. smad3b ENSDARG00000010207 951 0.834 - 0.834 - - - - - - - SMAD family member 3b [Source:ZFIN;Acc:ZDB-GENE-030128-4]
52. SCML2 ENSDARG00000012949 1310 0.832 - - - - - 0.832 - - - Scm polycomb group protein like 2 [Source:ZFIN;Acc:ZDB-GENE-130530-546]
53. prr14 ENSDARG00000089232 495 0.832 - 0.832 - - - - - - - proline rich 14 [Source:ZFIN;Acc:ZDB-GENE-030131-3785]
54. smg6 ENSDARG00000100481 493 0.832 0.832 - - - - - - - - SMG6 nonsense mediated mRNA decay factor [Source:ZFIN;Acc:ZDB-GENE-081107-52]
55. zgc:109889 ENSDARG00000069600, ENSDARG00000113538 554 0.831 - 0.831 - - - - - - - zgc:109889 [Source:ZFIN;Acc:ZDB-GENE-050522-547]
56. rdh12 ENSDARG00000018069 396 0.83 - 0.830 - - - - - - - retinol dehydrogenase 12 [Source:ZFIN;Acc:ZDB-GENE-040718-9]
57. osgep ENSDARG00000045846 738 0.83 - 0.830 - - - - - - - O-sialoglycoprotein endopeptidase [Source:ZFIN;Acc:ZDB-GENE-030131-7880]
58. nbn ENSDARG00000040303 43 0.83 - 0.830 - - - - - - - nibrin [Source:ZFIN;Acc:ZDB-GENE-041008-35]
59. nxt2 ENSDARG00000061527, ENSDARG00000113656 277 0.829 - 0.829 - - - - - - - nuclear transport factor 2-like export factor 2 [Source:ZFIN;Acc:ZDB-GENE-050521-1]
60. bdnf ENSDARG00000018817 193 0.828 - - - - - - - 0.828 - brain-derived neurotrophic factor [Source:ZFIN;Acc:ZDB-GENE-000412-1]
61. nsl1 ENSDARG00000024471 1269 0.828 - - - - - - - 0.828 - NSL1, MIS12 kinetochore complex component [Source:ZFIN;Acc:ZDB-GENE-041014-362]
62. si:ch211-131e11.16 si:ch211-131e11.16 111 0.827 - 0.827 - - - - - - -
63. sp5 sp5 622 0.826 - - - - - - - 0.826 -
64. thap3 ENSDARG00000041080, ENSDARG00000114392 220 0.825 0.825 - - - - - - - - THAP domain containing, apoptosis associated protein 3 [Source:ZFIN;Acc:ZDB-GENE-050327-4]
65. CR352265.1 ENSDARG00000062758 39 0.824 - 0.824 - - - - - - -
66. ddx42 ENSDARG00000037928 1659 0.822 - - - - - - 0.822 - - DEAD (Asp-Glu-Ala-Asp) box helicase 42 [Source:ZFIN;Acc:ZDB-GENE-050706-53]
67. BEND2_1 BEND2_1 45 0.821 - 0.821 - - - - - - -
68. arhgap4b ENSDARG00000015003 451 0.821 - 0.821 - - - - - - - Rho GTPase activating protein 4b [Source:ZFIN;Acc:ZDB-GENE-090311-38]
69. FP017295.1 ENSDARG00000091185 22 0.821 - 0.821 - - - - - - -
70. si:dkey-125i10.3 ENSDARG00000094760 908 0.82 0.820 - - - - - - - - si:dkey-125i10.3 [Source:ZFIN;Acc:ZDB-GENE-060526-198]
71. arl10 37 0.82 - 0.820 - - - - - - - ADP-ribosylation factor-like 10
72. ORC2 ENSDARG00000101465 399 0.82 - - - - - 0.820 - - - origin recognition complex, subunit 2 [Source:ZFIN;Acc:ZDB-GENE-061013-682]
73. tmem194a tmem194a 745 0.82 - - - - - - - 0.820 -
74. cenpf ENSDARG00000055133 5267 0.819 0.819 - - - - - - - - centromere protein F [Source:ZFIN;Acc:ZDB-GENE-041111-205]
75. tbc1d2b ENSDARG00000061986 247 0.818 - 0.818 - - - - - - - TBC1 domain family, member 2B [Source:ZFIN;Acc:ZDB-GENE-100922-148]
76. ctdspl2b ENSDARG00000060586 1682 0.817 - 0.817 - - - - - - - CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2b [Source:ZFIN;Acc:ZDB-GENE-030131-1809]
77. C5H12orf49 C5H12orf49 681 0.817 0.817 - - - - - - - -
78. PPP1R21 ENSDARG00000103144 385 0.817 0.817 - - - - - - - - protein phosphatase 1, regulatory subunit 21 [Source:ZFIN;Acc:ZDB-GENE-041114-8]
79. mkln1 ENSDARG00000025576 1122 0.812 - 0.812 - - - - - - - muskelin 1, intracellular mediator containing kelch motifs [Source:ZFIN;Acc:ZDB-GENE-030131-3942]
80. herpud2 ENSDARG00000021033 1800 0.811 0.811 - - - - - - - - HERPUD family member 2 [Source:ZFIN;Acc:ZDB-GENE-040426-868]
81. PHYHIP ENSDARG00000116497 456 0.81 0.810 - - - - - - - - phytanoyl-CoA 2-hydroxylase interacting protein [Source:NCBI gene;Acc:100002455]
82. CR339057.1 CR339057.1 7 0.81 - 0.810 - - - - - - -
83. hspb7 ENSDARG00000104441 1417 0.808 - 0.808 - - - - - - - heat shock protein family, member 7 (cardiovascular) [Source:ZFIN;Acc:ZDB-GENE-041010-136]
84. ifi35 ENSDARG00000075643 62 0.808 - 0.808 - - - - - - - interferon-induced protein 35 [Source:ZFIN;Acc:ZDB-GENE-100311-2]
85. zgc:77391 zgc:77391 1445 0.807 - 0.807 - - - - - - -
86. acot9.1 ENSDARG00000058352, ENSDARG00000114328 489 0.807 - - - - - - - 0.807 - acyl-CoA thioesterase 9, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-040724-139]
87. ERCC6L2 ENSDARG00000012403 236 0.806 - 0.806 - - - - - - - excision repair cross-complementation group 6-like 2 [Source:ZFIN;Acc:ZDB-GENE-110411-274]
88. arhgap35 254 0.805 - 0.805 - - - - - - - Rho GTPase activating protein 35b, transcript variant X2
89. oxr1b ENSDARG00000063310 929 0.805 - 0.805 - - - - - - - oxidation resistance 1b [Source:ZFIN;Acc:ZDB-GENE-030131-2438]
90. g3bp2 ENSDARG00000014790 257 0.804 - 0.804 - - - - - - - GTPase activating protein (SH3 domain) binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-070112-1972]
91. CABZ01081148.1 CABZ01081148.1 789 0.803 - - - - - - 0.803 - -
92. alkbh8 ENSDARG00000060256 102 0.803 - 0.803 - - - - - - - alkB homolog 8, tRNA methyltransferase [Source:ZFIN;Acc:ZDB-GENE-100922-251]
93. dmbx1b ENSDARG00000002510 351 0.802 - - - - - - - 0.802 - diencephalon/mesencephalon homeobox 1b [Source:ZFIN;Acc:ZDB-GENE-050417-97]
94. nab1b ENSDARG00000040700 289 0.802 - - - - - - - 0.802 - NGFI-A binding protein 1b (EGR1 binding protein 1) [Source:ZFIN;Acc:ZDB-GENE-081105-85]
95. asb2a asb2a 845 0.8 - 0.800 - - - - - - -
96. hmx2 ENSDARG00000070954, ENSDARG00000115364 396 0.799 0.799 - - - - - - - - H6 family homeobox 2 [Source:ZFIN;Acc:ZDB-GENE-080506-2]
97. zgc:113377 335 0.799 - - - - - 0.799 - - - zgc:113377, transcript variant X2
98. cables2b ENSDARG00000017154 131 0.798 0.798 - - - - - - - - Cdk5 and Abl enzyme substrate 2b [Source:ZFIN;Acc:ZDB-GENE-090313-249]
99. six4a ENSDARG00000004695 413 0.797 - 0.797 - - - - - - - SIX homeobox 4a [Source:ZFIN;Acc:ZDB-GENE-010201-2]
100. KEL ENSDARG00000076950 159 0.796 - 0.796 - - - - - - - Kell metallo-endopeptidase (Kell blood group) [Source:ZFIN;Acc:ZDB-GENE-110411-118]

There are 806 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA