Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for SMG8

Gene Name Gene ID Reads Annotation
SMG8 ENSGALG00000005093 5557 SMG8 nonsense mediated mRNA decay factor











Genes with expression patterns similar to SMG8

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. SMG8 ENSGALG00000005093 5557 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 SMG8 nonsense mediated mRNA decay factor
2. CYB5R2 ENSGALG00000032372 7967 1.58 - - - - - - 0.736 0.844 - - cytochrome b5 reductase 2 [Source:NCBI gene;Acc:408182]
3. ANGPTL1 ENSGALG00000004290 1922 0.966 - - - - - - - 0.966 - - angiopoietin like 1 [Source:NCBI gene;Acc:770850]
4. CLCN5 ENSGALG00000007234 1143 0.965 - - - - - - - 0.965 - - chloride voltage-gated channel 5 [Source:HGNC Symbol;Acc:HGNC:2023]
5. KIAA1009 KIAA1009 1261 0.963 - - - - - - - 0.963 - -
6. SPATA2 ENSGALG00000008026 2040 0.963 - - - - - - - 0.963 - - spermatogenesis associated 2 [Source:NCBI gene;Acc:419355]
7. GP1BB ENSGALG00000021529 348 0.962 - - - - - - - 0.962 - - glycoprotein Ib platelet subunit beta [Source:HGNC Symbol;Acc:HGNC:4440]
8. TXNDC11 ENSGALG00000003154 2224 0.962 - - - - - - - 0.962 - - thioredoxin domain containing 11 [Source:HGNC Symbol;Acc:HGNC:28030]
9. MTIF2 ENSGALG00000031265 2366 0.96 - - - - - - - 0.960 - - mitochondrial translational initiation factor 2 [Source:NCBI gene;Acc:421213]
10. LRIG3 ENSGALG00000009755 6655 0.959 - - - - - - - 0.959 - - leucine rich repeats and immunoglobulin like domains 3 [Source:NCBI gene;Acc:417813]
11. APBB2 ENSGALG00000014262 569 0.958 - - - - - - - 0.958 - - amyloid beta precursor protein binding family B member 2 [Source:HGNC Symbol;Acc:HGNC:582]
12. HAGHL ENSGALG00000021040 1568 0.958 - - - - - - - 0.958 - - hydroxyacylglutathione hydrolase-like [Source:NCBI gene;Acc:416536]
13. ENSGALG00000018634 ENSGALG00000018634 414 0.957 - - - - - - - 0.957 - -
14. ENSGALG00000021439 ENSGALG00000021439 628 0.956 - - - - - - - 0.956 - -
15. SLC25A28 ENSGALG00000007479 4902 0.956 - - - - - - - 0.956 - - solute carrier family 25 member 28 [Source:HGNC Symbol;Acc:HGNC:23472]
16. ABHD12B ENSGALG00000020342 511 0.955 - - - - - - - 0.955 - - abhydrolase domain containing 12B, transcript variant X2
17. NRG1 ENSGALG00000015422 196 0.955 - - - - - - - 0.955 - - neuregulin 1 [Source:NCBI gene;Acc:373906]
18. FGFR1 ENSGALG00000039786 4480 0.954 - - - - - - - 0.954 - - fibroblast growth factor receptor 1 [Source:NCBI gene;Acc:396516]
19. TICAM1 ENSGALG00000026850 723 0.954 - - - - - - - 0.954 - - toll like receptor adaptor molecule 1 [Source:NCBI gene;Acc:100008585]
20. PAIP1 ENSGALG00000014867 202 0.953 - - - - - - - 0.953 - - poly(A) binding protein interacting protein 1 [Source:NCBI gene;Acc:427195]
21. UBN1 ENSGALG00000031416 2848 0.953 - - - - - - - 0.953 - - ubinuclein 1 [Source:NCBI gene;Acc:416398]
22. BRCA1 ENSGALG00000002781 2052 0.953 - - - - - - - 0.953 - - BRCA1, DNA repair associated [Source:NCBI gene;Acc:373983]
23. ARNTL2 ENSGALG00000014096 998 0.953 - - - - - - - 0.953 - - aryl hydrocarbon receptor nuclear translocator-like 2 [Source:NCBI gene;Acc:373925]
24. CRABP2 ENSGALG00000029140 559 0.952 - - - - - - - 0.952 - - cellular retinoic acid binding protein 2 [Source:HGNC Symbol;Acc:HGNC:2339]
25. RBM46 ENSGALG00000009278 98 0.952 - - - - - - - 0.952 - - RNA binding motif protein 46 [Source:HGNC Symbol;Acc:HGNC:28401]
26. TPM3 ENSGALG00000013537 934 0.951 - - - - - - - 0.951 - - Gallus gallus tropomyosin 3 (TPM3), transcript variant 2, mRNA. [Source:RefSeq mRNA;Acc:NM_001352039]
27. NPR2 ENSGALG00000027630 871 0.951 - - - - - - - 0.951 - - natriuretic peptide receptor 2 [Source:HGNC Symbol;Acc:HGNC:7944]
28. ASTN2 ENSGALG00000007038 1748 0.95 - - - - - - - 0.950 - - astrotactin 2 [Source:HGNC Symbol;Acc:HGNC:17021]
29. SPATA2L ENSGALG00000044991 463 0.95 - - - - - - - 0.950 - - spermatogenesis associated 2 like [Source:HGNC Symbol;Acc:HGNC:28393]
30. ITFG1 ENSGALG00000004049 2934 0.95 - - - - - - - 0.950 - - integrin alpha FG-GAP repeat containing 1 [Source:NCBI gene;Acc:415742]
31. ZNF750 ENSGALG00000001518 151 0.95 - - - - - - - 0.950 - - zinc finger protein 750 [Source:HGNC Symbol;Acc:HGNC:25843]
32. SLC19A1 ENSGALG00000030511 1397 0.949 - - - - - - - 0.949 - - solute carrier family 19 member 1 [Source:NCBI gene;Acc:424034]
33. CCDC117 ENSGALG00000005784 185 0.949 - - - - - - - 0.949 - - coiled-coil domain containing 117 [Source:HGNC Symbol;Acc:HGNC:26599]
34. CCDC80 ENSGALG00000015193 1387 0.949 - - - - - - - 0.949 - - coiled-coil domain containing 80 [Source:NCBI gene;Acc:395074]
35. PNN ENSGALG00000010167 6417 0.948 - - - - - - - 0.948 - - pinin, desmosome associated protein [Source:HGNC Symbol;Acc:HGNC:9162]
36. KIF21B ENSGALG00000034347 4144 0.947 - - - - - - - 0.947 - - kinesin family member 21B [Source:HGNC Symbol;Acc:HGNC:29442]
37. EML1 1941 0.947 - - - - - - - 0.947 - - echinoderm microtubule associated protein like 1, transcript variant X11
38. RFX7 ENSGALG00000041896 69 0.947 - - - - - - - 0.947 - - regulatory factor X7 [Source:HGNC Symbol;Acc:HGNC:25777]
39. TRPC1 ENSGALG00000002639 296 0.947 - - - - - - - 0.947 - - transient receptor potential cation channel subfamily C member 1 [Source:NCBI gene;Acc:424776]
40. ENSGALG00000011233 ENSGALG00000011233 42 0.947 - - - - - - - 0.947 - -
41. GKAP1 ENSGALG00000012586 2908 0.947 - - - - - - - 0.947 - - G kinase anchoring protein 1 [Source:HGNC Symbol;Acc:HGNC:17496]
42. DMA DMA 1012 0.947 - - - - - - - 0.947 - -
43. RIMKLB ENSGALG00000040184 281 0.946 - - - - - - - 0.946 - - ribosomal modification protein rimK like family member B [Source:HGNC Symbol;Acc:HGNC:29228]
44. NPAT ENSGALG00000017162 1574 0.946 - - - - - - - 0.946 - - nuclear protein, coactivator of histone transcription [Source:HGNC Symbol;Acc:HGNC:7896]
45. SRR ENSGALG00000003155 93 0.945 - - - - - - - 0.945 - - serine racemase [Source:HGNC Symbol;Acc:HGNC:14398]
46. NUDT6 ENSGALG00000011834 1309 0.943 - - - - - - - 0.943 - - nudix hydrolase 6 [Source:HGNC Symbol;Acc:HGNC:8053]
47. PKN3 532 0.943 - - - - - - - 0.943 - - protein kinase N3, transcript variant X2
48. PDZD8 ENSGALG00000029095 1068 0.943 - - - - - - - 0.943 - - PDZ domain containing 8 [Source:HGNC Symbol;Acc:HGNC:26974]
49. ATP1B3 ENSGALG00000002764 1890 0.943 - - - - - - - 0.943 - - ATPase Na+/K+ transporting subunit beta 3 [Source:NCBI gene;Acc:396549]
50. DOK5 ENSGALG00000007786 1732 0.941 - - - - - - - 0.941 - - docking protein 5 [Source:HGNC Symbol;Acc:HGNC:16173]
51. ENTPD4 ENSGALG00000000390 1394 0.941 - - - - - - - 0.941 - - ectonucleoside triphosphate diphosphohydrolase 4 [Source:HGNC Symbol;Acc:HGNC:14573]
52. BUD13 ENSGALG00000025882 1800 0.94 - - - - - - - 0.940 - - BUD13 homolog [Source:NCBI gene;Acc:428248]
53. TMEM161A ENSGALG00000025809 2813 0.94 - - - - - - - 0.940 - - transmembrane protein 161A [Source:HGNC Symbol;Acc:HGNC:26020]
54. RASA3 ENSGALG00000016817 2146 0.939 - - - - - - - 0.939 - - RAS p21 protein activator 3 [Source:NCBI gene;Acc:418736]
55. ZBTB18 ENSGALG00000010705 3433 0.938 - - - - - - - 0.938 - - zinc finger and BTB domain containing 18 [Source:HGNC Symbol;Acc:HGNC:13030]
56. BACE2 ENSGALG00000034932 1570 0.938 - - - - - - - 0.938 - - beta-secretase 2 [Source:HGNC Symbol;Acc:HGNC:934]
57. PECR ENSGALG00000011497 1714 0.937 - - - - - - - 0.937 - - peroxisomal trans-2-enoyl-CoA reductase [Source:NCBI gene;Acc:424224]
58. AGRN ENSGALG00000039193 8135 0.937 - - - - - - - 0.937 - - agrin [Source:NCBI gene;Acc:396538]
59. G2E3 ENSGALG00000009907 1754 0.936 - - - - - - - 0.936 - - G2/M-phase specific E3 ubiquitin protein ligase [Source:NCBI gene;Acc:423305]
60. MMP15 ENSGALG00000038758 49988 0.936 - - - - - - - 0.936 - - matrix metallopeptidase 15 [Source:HGNC Symbol;Acc:HGNC:7161]
61. SELENBP1 ENSGALG00000000866 1253 0.936 - - - - - - - 0.936 - - selenium binding protein 1 [Source:NCBI gene;Acc:425664]
62. HOOK1 ENSGALG00000010889 1007 0.935 - - - - - - - 0.935 - - hook microtubule tethering protein 1 [Source:NCBI gene;Acc:424675]
63. MAOB ENSGALG00000032836 1054 0.935 - - - - - - - 0.935 - - monoamine oxidase B
64. FBXL8 ENSGALG00000003201 847 0.934 - - - - - - - 0.934 - - F-box and leucine rich repeat protein 8 [Source:NCBI gene;Acc:415701]
65. NPL ENSGALG00000004614 617 0.933 - - - - - - - 0.933 - - N-acetylneuraminate pyruvate lyase [Source:NCBI gene;Acc:429074]
66. AIP ENSGALG00000040247 4166 0.933 - - - - - - - 0.933 - - aryl hydrocarbon receptor interacting protein [Source:NCBI gene;Acc:395123]
67. AGGF1 ENSGALG00000004311 3011 0.932 - - - - - - - 0.932 - - angiogenic factor with G-patch and FHA domains 1, transcript variant X1
68. ZNF384 ENSGALG00000032599 2369 0.931 - - - - - - - 0.931 - - zinc finger protein 384 [Source:NCBI gene;Acc:770350]
69. NT5C3B ENSGALG00000003651 5190 0.928 - - - - - - - 0.928 - - 5'-nucleotidase, cytosolic IIIB [Source:NCBI gene;Acc:420034]
70. USP28 ENSGALG00000006969 2645 0.928 - - - - - - - 0.928 - - ubiquitin specific peptidase 28 [Source:NCBI gene;Acc:428246]
71. MTUS1 ENSGALG00000013615 1040 0.928 - - - - - - - 0.928 - - microtubule associated tumor suppressor 1, transcript variant X4
72. SH3TC1 ENSGALG00000015568 484 0.927 - - - - - - - 0.927 - - SH3 domain and tetratricopeptide repeats 1 [Source:HGNC Symbol;Acc:HGNC:26009]
73. ITFG2 ENSGALG00000014335 1896 0.925 - - - - - - - 0.925 - - integrin alpha FG-GAP repeat containing 2 [Source:HGNC Symbol;Acc:HGNC:30879]
74. PPP2R3A ENSGALG00000034512 1091 0.925 - - - - - - - 0.925 - - protein phosphatase 2 regulatory subunit B''alpha [Source:HGNC Symbol;Acc:HGNC:9307]
75. ERMARD ENSGALG00000011186 1001 0.924 - - - - - - - 0.924 - - ER membrane associated RNA degradation [Source:HGNC Symbol;Acc:HGNC:21056]
76. EPGN ENSGALG00000010859 187 0.921 - - - - - - - 0.921 - - epithelial mitogen [Source:NCBI gene;Acc:497270]
77. PHF2 ENSGALG00000039208 2003 0.921 - - - - - - - 0.921 - - PHD finger protein 2 [Source:HGNC Symbol;Acc:HGNC:8920]
78. HYAL1 ENSGALG00000000785 1778 0.92 - - - - - - - 0.920 - - hyaluronoglucosaminidase 1, transcript variant X3
79. TCTN2 ENSGALG00000023683 3596 0.919 - - - - - - - 0.919 - - tectonic family member 2 [Source:HGNC Symbol;Acc:HGNC:25774]
80. RNASEH1 ENSGALG00000016389 2694 0.919 - - - - - - - 0.919 - - ribonuclease H1 [Source:NCBI gene;Acc:395848]
81. VPS13D ENSGALG00000034777 2350 0.918 - - - - - - - 0.918 - - vacuolar protein sorting 13 homolog D [Source:HGNC Symbol;Acc:HGNC:23595]
82. LBP ENSGALG00000006756 1684 0.918 - - - - - - - 0.918 - - lipopolysaccharide binding protein, transcript variant X1
83. CCNL2 ENSGALG00000001551 2620 0.917 - - - - - - - 0.917 - - cyclin L2 [Source:NCBI gene;Acc:395124]
84. PCYOX1 ENSGALG00000013878 2200 0.916 - - - - - - - 0.916 - - prenylcysteine oxidase 1 [Source:HGNC Symbol;Acc:HGNC:20588]
85. LIMS1 ENSGALG00000029970 7244 0.916 - - - - - - - 0.916 - - LIM zinc finger domain containing 1 [Source:NCBI gene;Acc:414880]
86. KLF6 ENSGALG00000033178 679 0.915 - - - - - - - 0.915 - - Kruppel like factor 6 [Source:NCBI gene;Acc:420463]
87. RCAN3 ENSGALG00000004282 7778 0.915 - - - - - - - 0.915 - - RCAN family member 3 [Source:NCBI gene;Acc:419698]
88. TTC38 ENSGALG00000014551 1135 0.914 - - - - - - - 0.914 - - tetratricopeptide repeat domain 38 [Source:HGNC Symbol;Acc:HGNC:26082]
89. MXD4 ENSGALG00000015688 1472 0.914 - - - - - - - 0.914 - - MAX dimerization protein 4 [Source:NCBI gene;Acc:422890]
90. EFCAB10 ENSGALG00000045949 514 0.914 - - - - - - - 0.914 - - EF-hand calcium binding domain 10 [Source:HGNC Symbol;Acc:HGNC:34531]
91. CPT2 ENSGALG00000010681 3211 0.914 - - - - - - - 0.914 - - carnitine palmitoyltransferase 2 [Source:NCBI gene;Acc:424649]
92. NCAPH ENSGALG00000032270 2103 0.907 - - - - - - - 0.907 - - non-SMC condensin I complex subunit H [Source:NCBI gene;Acc:425304]
93. ALAS1 3660 0.906 - - - - - - - 0.906 - - 5'-aminolevulinate synthase 1, transcript variant X1
94. PTPN4 3030 0.904 - - - - - - - 0.904 - - protein tyrosine phosphatase, non-receptor type 4, transcript variant X2
95. ACSS2 ENSGALG00000003362 3023 0.902 - - - - - - - 0.902 - - acyl-CoA synthetase short chain family member 2 [Source:HGNC Symbol;Acc:HGNC:15814]
96. HDAC1 ENSGALG00000003297 3528 0.901 - - - - - - - 0.901 - - histone deacetylase 1 [Source:NCBI gene;Acc:373961]
97. FBXL17 ENSGALG00000000276 2443 0.901 - - - - - - - 0.901 - - F-box and leucine rich repeat protein 17 [Source:HGNC Symbol;Acc:HGNC:13615]
98. TAF1A ENSGALG00000009441 2431 0.9 - - - - - - - 0.900 - - TATA-box binding protein associated factor, RNA polymerase I subunit A [Source:NCBI gene;Acc:421338]
99. DOCK10 ENSGALG00000005030 848 0.9 - - - - - - - 0.900 - - dedicator of cytokinesis 10 [Source:HGNC Symbol;Acc:HGNC:23479]
100. HSD17B7 ENSGALG00000037852 4750 0.899 - - - - - - - 0.899 - - hydroxysteroid 17-beta dehydrogenase 7 [Source:NCBI gene;Acc:424367]

There are 121 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA