Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for SMG7

Gene Name Gene ID Reads Annotation
SMG7 ENSGALG00000004667 707 SMG7, nonsense mediated mRNA decay factor [Source:HGNC Symbol;Acc:HGNC:16792]











Genes with expression patterns similar to SMG7

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. SMG7 ENSGALG00000004667 707 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 SMG7, nonsense mediated mRNA decay factor [Source:HGNC Symbol;Acc:HGNC:16792]
2. ANKRD9 ENSGALG00000011376 525 1.765 - - - 0.766 0.999 - - - - - ankyrin repeat domain 9 [Source:HGNC Symbol;Acc:HGNC:20096]
3. UROC1 ENSGALG00000006306 75 1.702 - - - - - 0.910 - - - 0.792 urocanate hydratase 1 [Source:HGNC Symbol;Acc:HGNC:26444]
4. TNIP2 ENSGALG00000015666 28 1.7 - - - - - 0.873 - - - 0.827 TNFAIP3 interacting protein 2 [Source:NCBI gene;Acc:422884]
5. KITLG ENSGALG00000011206 71 1.644 - - - 0.911 - 0.733 - - - - KIT ligand [Source:NCBI gene;Acc:396028]
6. TMEM206 ENSGALG00000009822 80 1.601 - - - - - 0.811 - - - 0.790 transmembrane protein 206 [Source:HGNC Symbol;Acc:HGNC:25593]
7. TDP1 ENSGALG00000010669 57 1.564 - - - - - - 0.832 - - 0.732 tyrosyl-DNA phosphodiesterase 1 [Source:HGNC Symbol;Acc:HGNC:18884]
8. TMEM177 ENSGALG00000011593 311 1.554 - - - 0.838 - - - - - 0.716 transmembrane protein 177 [Source:HGNC Symbol;Acc:HGNC:28143]
9. PREP2 PREP2 238 1 - - - - 1.000 - - - - -
10. RAMP3 ENSGALG00000037246 1187 1 - - - - 1.000 - - - - - receptor activity modifying protein 3 [Source:NCBI gene;Acc:420786]
11. PTK2B ENSGALG00000016564 406 0.999 - - - - 0.999 - - - - - protein tyrosine kinase 2 beta [Source:HGNC Symbol;Acc:HGNC:9612]
12. SDCBP ENSGALG00000015436 1228 0.999 - - - - 0.999 - - - - - syndecan binding protein [Source:NCBI gene;Acc:421136]
13. MED8 ENSGALG00000009993 3095 0.999 - - - - 0.999 - - - - - mediator complex subunit 8 [Source:NCBI gene;Acc:424565]
14. PRDM4 ENSGALG00000012619 876 0.999 - - - - 0.999 - - - - - PR/SET domain 4 [Source:HGNC Symbol;Acc:HGNC:9348]
15. GTF2H1 ENSGALG00000042340 1553 0.998 - - - - 0.998 - - - - - general transcription factor IIH subunit 1 [Source:NCBI gene;Acc:423081]
16. RBM6 ENSGALG00000035578 1690 0.998 - - - - 0.998 - - - - - RNA binding motif protein 6 [Source:NCBI gene;Acc:415931]
17. BRF1 ENSGALG00000011705 3406 0.998 - - - - 0.998 - - - - - BRF1, RNA polymerase III transcription initiation factor subunit [Source:HGNC Symbol;Acc:HGNC:11551]
18. LZIC ENSGALG00000002616 9052 0.997 - - - - 0.997 - - - - - leucine zipper and CTNNBIP1 domain containing [Source:NCBI gene;Acc:419445]
19. YARS ENSGALG00000003563 11093 0.997 - - - - 0.997 - - - - - tyrosyl-tRNA synthetase [Source:NCBI gene;Acc:419666]
20. ASAP2 ENSGALG00000016419 1393 0.996 - - - - 0.996 - - - - - ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 [Source:HGNC Symbol;Acc:HGNC:2721]
21. NDUFV1 ENSGALG00000042809 6222 0.996 - - - - 0.996 - - - - - NADH:ubiquinone oxidoreductase core subunit V1 [Source:NCBI gene;Acc:430210]
22. SYNE1 ENSGALG00000013505 2324 0.996 - - - - 0.996 - - - - - spectrin repeat containing, nuclear envelope 1, transcript variant X3
23. PHTF1 ENSGALG00000001845 3276 0.995 - - - - 0.995 - - - - - putative homeodomain transcription factor 1 [Source:HGNC Symbol;Acc:HGNC:8939]
24. ENSGALG00000006569 ENSGALG00000006569 2169 0.995 - - - - 0.995 - - - - -
25. BAHD1 ENSGALG00000033675 1779 0.995 - - - - 0.995 - - - - - bromo adjacent homology domain containing 1 [Source:HGNC Symbol;Acc:HGNC:29153]
26. ETS1 ENSGALG00000001143 7284 0.995 - - - - 0.995 - - - - - v-ets avian erythroblastosis virus E26 oncogene homolog 1 [Source:NCBI gene;Acc:396235]
27. PITHD1 ENSGALG00000003986 11470 0.995 - - - - 0.995 - - - - - PITH domain containing 1 [Source:HGNC Symbol;Acc:HGNC:25022]
28. SAP30 ENSGALG00000036252 2032 0.995 - - - - 0.995 - - - - - Sin3A associated protein 30 [Source:HGNC Symbol;Acc:HGNC:10532]
29. TMF1 ENSGALG00000013408 3344 0.995 - - - - 0.995 - - - - - TATA element modulatory factor 1 [Source:HGNC Symbol;Acc:HGNC:11870]
30. SNX14 ENSGALG00000015831 2554 0.994 - - - - 0.994 - - - - - sorting nexin 14 [Source:NCBI gene;Acc:421832]
31. RAD54B ENSGALG00000043597 1699 0.994 - - - - 0.994 - - - - - RAD54 homolog B [Source:NCBI gene;Acc:395449]
32. RBM34 ENSGALG00000029915 5618 0.994 - - - - 0.994 - - - - - RNA binding motif protein 34 [Source:HGNC Symbol;Acc:HGNC:28965]
33. MRPL16 ENSGALG00000029419 8033 0.993 - - - - 0.993 - - - - - mitochondrial ribosomal protein L16 [Source:HGNC Symbol;Acc:HGNC:14476]
34. KIF11 ENSGALG00000030597 5528 0.993 - - - - 0.993 - - - - - kinesin family member 11 [Source:NCBI gene;Acc:423809]
35. IARS2 ENSGALG00000009566 4599 0.993 - - - - 0.993 - - - - - isoleucyl-tRNA synthetase 2, mitochondrial [Source:NCBI gene;Acc:421346]
36. FNDC5 ENSGALG00000003567 3328 0.992 - - - - 0.992 - - - - - Gallus gallus fibronectin type III domain containing 5 (FNDC5), mRNA. [Source:RefSeq mRNA;Acc:NM_001318986]
37. HSF2 ENSGALG00000038420 5259 0.992 - - - - 0.992 - - - - - heat shock transcription factor 2 [Source:NCBI gene;Acc:421724]
38. EDNRA ENSGALG00000010013 2472 0.992 - - - - 0.992 - - - - - endothelin receptor type A [Source:NCBI gene;Acc:373908]
39. RALGDS ENSGALG00000003412 4478 0.991 - - - - 0.991 - - - - - ral guanine nucleotide dissociation stimulator, transcript variant X10
40. STARD3NL ENSGALG00000033038 4851 0.991 - - - - 0.991 - - - - - STARD3 N-terminal like [Source:HGNC Symbol;Acc:HGNC:19169]
41. C9orf85 ENSGALG00000026001 4110 0.991 - - - - 0.991 - - - - - chromosome 9 open reading frame 85 [Source:HGNC Symbol;Acc:HGNC:28784]
42. DGKZ ENSGALG00000008380 5389 0.99 - - - - 0.990 - - - - - diacylglycerol kinase zeta [Source:NCBI gene;Acc:423197]
43. DLL1 ENSGALG00000011182 1613 0.99 - - - - 0.990 - - - - - delta like canonical Notch ligand 1 [Source:NCBI gene;Acc:395820]
44. COQ5 ENSGALG00000007185 5614 0.99 - - - - 0.990 - - - - - coenzyme Q5, methyltransferase [Source:NCBI gene;Acc:416975]
45. CDKN1B ENSGALG00000022980 4606 0.989 - - - - 0.989 - - - - - cyclin dependent kinase inhibitor 1B [Source:NCBI gene;Acc:374106]
46. WDR92 ENSGALG00000008760 3934 0.989 - - - - 0.989 - - - - - WD repeat domain 92 [Source:NCBI gene;Acc:769534]
47. TSPO2 ENSGALG00000003212 5141 0.989 - - - - 0.989 - - - - - translocator protein 2 [Source:HGNC Symbol;Acc:HGNC:21256]
48. MEF2BNB MEF2BNB 5578 0.988 - - - - 0.988 - - - - -
49. LOC426385 ENSGALG00000026301 2703 0.988 - - - - 0.988 - - - - - serine/threonine kinase 35-like, transcript variant X2
50. MED21 ENSGALG00000027435 5766 0.987 - - - - 0.987 - - - - - mediator complex subunit 21 [Source:HGNC Symbol;Acc:HGNC:11473]
51. TIMMDC1 ENSGALG00000024480 9337 0.987 - - - - 0.987 - - - - - translocase of inner mitochondrial membrane domain containing 1 [Source:NCBI gene;Acc:418453]
52. LMAN2 ENSGALG00000033232 11740 0.987 - - - - 0.987 - - - - - lectin, mannose binding 2 [Source:HGNC Symbol;Acc:HGNC:16986]
53. ENSGALG00000027854 ENSGALG00000027854 5007 0.986 - - - - 0.986 - - - - -
54. SFXN5 ENSGALG00000016094 2678 0.986 - - - - 0.986 - - - - - sideroflexin 5 [Source:HGNC Symbol;Acc:HGNC:16073]
55. UTP6 ENSGALG00000003260 4909 0.985 - - - - 0.985 - - - - - UTP6, small subunit processome component [Source:NCBI gene;Acc:417405]
56. MARC1 ENSGALG00000009453 5675 0.984 - - - - 0.984 - - - - - mitochondrial amidoxime reducing component 1 [Source:NCBI gene;Acc:428563]
57. PBRM1 ENSGALG00000037455 6450 0.984 - - - - 0.984 - - - - - polybromo 1 [Source:NCBI gene;Acc:396074]
58. PSMG3 ENSGALG00000004203 11240 0.983 - - - - 0.983 - - - - - proteasome assembly chaperone 3 [Source:NCBI gene;Acc:416463]
59. CDH3 5050 0.981 - - - - 0.981 - - - - - cadherin 3
60. WNK2 ENSGALG00000038850 4712 0.981 - - - - 0.981 - - - - - WNK lysine deficient protein kinase 2 [Source:HGNC Symbol;Acc:HGNC:14542]
61. FUNDC2 ENSGALG00000029585 9334 0.979 - - - - 0.979 - - - - - FUN14 domain containing 2 [Source:HGNC Symbol;Acc:HGNC:24925]
62. RHOT1 ENSGALG00000003397 5149 0.979 - - - - 0.979 - - - - - ras homolog family member T1 [Source:NCBI gene;Acc:417410]
63. SH3BGR ENSGALG00000016127 2561 0.979 - - - - 0.979 - - - - - SH3 domain binding glutamate rich protein
64. MYBL2 ENSGALG00000003503 15875 0.979 - - - - 0.979 - - - - - MYB proto-oncogene like 2 [Source:NCBI gene;Acc:396258]
65. CCDC132 CCDC132 2632 0.978 - - - - 0.978 - - - - -
66. UPF3B ENSGALG00000008618 12350 0.977 - - - - 0.977 - - - - - UPF3B, regulator of nonsense mediated mRNA decay [Source:HGNC Symbol;Acc:HGNC:20439]
67. HARS ENSGALG00000035080 11602 0.977 - - - - 0.977 - - - - - histidyl-tRNA synthetase [Source:NCBI gene;Acc:416132]
68. LGMN ENSGALG00000010811 7401 0.976 - - - - 0.976 - - - - - legumain [Source:HGNC Symbol;Acc:HGNC:9472]
69. CDCA7 ENSGALG00000040833 7484 0.976 - - - - 0.976 - - - - - cell division cycle associated 7 [Source:HGNC Symbol;Acc:HGNC:14628]
70. PSMD3 ENSGALG00000033162 25615 0.973 - - - - 0.973 - - - - - proteasome 26S subunit, non-ATPase 3 [Source:NCBI gene;Acc:426133]
71. DLD ENSGALG00000007931 11011 0.973 - - - - 0.973 - - - - - dihydrolipoamide dehydrogenase [Source:NCBI gene;Acc:417699]
72. SLMO2 SLMO2 9207 0.972 - - - - 0.972 - - - - -
73. LGALS1 ENSGALG00000012420 13993 0.972 - - - - 0.972 - - - - - galectin 1 [Source:NCBI gene;Acc:396491]
74. MYO9A ENSGALG00000033618 4505 0.972 - - - - 0.972 - - - - - myosin IXA, transcript variant X10
75. ACAT2 ENSGALG00000011659 12825 0.971 - - - - 0.971 - - - - - acetyl-CoA acetyltransferase 2 [Source:NCBI gene;Acc:421587]
76. SPRED1 ENSGALG00000028203 6520 0.969 - - - - 0.969 - - - - - sprouty related EVH1 domain containing 1 [Source:NCBI gene;Acc:423292]
77. NEK6 ENSGALG00000001118 20333 0.969 - - - - 0.969 - - - - - NIMA related kinase 6 [Source:NCBI gene;Acc:417101]
78. DENR ENSGALG00000003795 30805 0.968 - - - - 0.968 - - - - - density regulated re-initiation and release factor [Source:NCBI gene;Acc:771794]
79. TAF3 ENSGALG00000006731 15569 0.968 - - - - 0.968 - - - - - TATA-box binding protein associated factor 3 [Source:NCBI gene;Acc:419107]
80. GATC ENSGALG00000007195 8610 0.967 - - - - 0.967 - - - - - glutamyl-tRNA amidotransferase subunit C, transcript variant X2
81. SLC30A4 ENSGALG00000005703 5696 0.967 - - - - 0.967 - - - - - solute carrier family 30 member 4 [Source:NCBI gene;Acc:415444]
82. NUP88 ENSGALG00000032280 9847 0.965 - - - - 0.965 - - - - - nucleoporin 88 [Source:HGNC Symbol;Acc:HGNC:8067]
83. SPEN ENSGALG00000036932 9688 0.964 - - - - 0.964 - - - - - spen family transcriptional repressor [Source:HGNC Symbol;Acc:HGNC:17575]
84. SRGAP1 ENSGALG00000009825 6753 0.963 - - - - 0.963 - - - - - SLIT-ROBO Rho GTPase activating protein 1 [Source:NCBI gene;Acc:417821]
85. ZC3H6 ENSGALG00000008269 10353 0.963 - - - - 0.963 - - - - - zinc finger CCCH-type containing 6 [Source:NCBI gene;Acc:421230]
86. PRCC ENSGALG00000040696 9346 0.962 - - - - 0.962 - - - - - proline rich mitotic checkpoint control factor [Source:HGNC Symbol;Acc:HGNC:9343]
87. ZYX ENSGALG00000014688 8686 0.96 - - - - 0.960 - - - - - zyxin [Source:NCBI gene;Acc:418300]
88. HDAC8 ENSGALG00000004825 12066 0.958 - - - - 0.958 - - - - - histone deacetylase 8, transcript variant X2
89. PRKCI ENSGALG00000009364 11574 0.956 - - - - 0.956 - - - - - protein kinase C iota [Source:NCBI gene;Acc:424991]
90. SRP19 ENSGALG00000000218 14207 0.955 - - - - 0.955 - - - - - signal recognition particle 19 [Source:HGNC Symbol;Acc:HGNC:11300]
91. BHMT ENSGALG00000004518 4700 0.955 - - - - 0.955 - - - - - betaine--homocysteine S-methyltransferase
92. VMA21 ENSGALG00000009065 6432 0.954 - - - - 0.954 - - - - - VMA21, vacuolar ATPase assembly factor [Source:NCBI gene;Acc:422385]
93. TM9SF3 ENSGALG00000005534 15290 0.952 - - - - 0.952 - - - - - transmembrane 9 superfamily member 3
94. Mar-05 Mar-05 6330 0.952 - - - - 0.952 - - - - -
95. CENPP ENSGALG00000004687 6707 0.948 - - - - 0.948 - - - - - centromere protein P [Source:NCBI gene;Acc:415952]
96. NDUFS4 ENSGALG00000028026 25876 0.946 - - - - 0.946 - - - - - NADH:ubiquinone oxidoreductase subunit S4 [Source:HGNC Symbol;Acc:HGNC:7711]
97. SEPHS1 ENSGALG00000014575 10701 0.943 - - - - 0.943 - - - - - selenophosphate synthetase 1 [Source:NCBI gene;Acc:426612]
98. COMMD2 ENSGALG00000028001 18981 0.942 - - - - 0.942 - - - - - COMM domain containing 2 [Source:HGNC Symbol;Acc:HGNC:24993]
99. PSMC1 ENSGALG00000010675 20633 0.941 - - - - 0.941 - - - - - proteasome 26S subunit, ATPase 1 [Source:NCBI gene;Acc:395804]
100. DNAJC9 ENSGALG00000002701 19249 0.941 - - - - 0.941 - - - - - DnaJ heat shock protein family (Hsp40) member C9 [Source:NCBI gene;Acc:423640]

There are 390 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA