Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for SMG6

Gene Name Gene ID Reads Annotation
SMG6 ENSGALG00000003108 5342 SMG6, nonsense mediated mRNA decay factor [Source:HGNC Symbol;Acc:HGNC:17809]











Genes with expression patterns similar to SMG6

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. SMG6 ENSGALG00000003108 5342 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 SMG6, nonsense mediated mRNA decay factor [Source:HGNC Symbol;Acc:HGNC:17809]
2. ARNTL2 ENSGALG00000014096 998 0.79 - - - - - - 0.790 - - - aryl hydrocarbon receptor nuclear translocator-like 2 [Source:NCBI gene;Acc:373925]
3. PTPRN2 ENSGALG00000030054 947 0.786 - - - - - - 0.786 - - - protein tyrosine phosphatase, receptor type N2 [Source:HGNC Symbol;Acc:HGNC:9677]
4. PHTF2 ENSGALG00000008335 722 0.772 - - - - - - 0.772 - - - putative homeodomain transcription factor 2 [Source:NCBI gene;Acc:417728]
5. AMACR ENSGALG00000003326 2657 0.769 - - - - - - 0.769 - - - alpha-methylacyl-CoA racemase [Source:NCBI gene;Acc:427429]
6. HRSP12 HRSP12 1165 0.765 - - - - - - 0.765 - - -
7. PPIE ENSGALG00000013383 3923 0.759 - - - - - - 0.759 - - - peptidylprolyl isomerase E [Source:HGNC Symbol;Acc:HGNC:9258]
8. KDELC2 ENSGALG00000017158 479 0.758 - - - - - - 0.758 - - - KDEL motif containing 2 [Source:HGNC Symbol;Acc:HGNC:28496]
9. BTG2 ENSGALG00000026858 6716 0.749 - - - - - - 0.749 - - - BTG anti-proliferation factor 2 [Source:HGNC Symbol;Acc:HGNC:1131]
10. CCDC34 ENSGALG00000012194 1377 0.748 - - - - - - 0.748 - - - coiled-coil domain containing 34
11. CRY2 ENSGALG00000008436 1732 0.741 - - - - - - 0.741 - - - cryptochrome circadian regulator 2 [Source:NCBI gene;Acc:374092]
12. PIP5K1B ENSGALG00000015107 939 0.738 - - - - - - 0.738 - - - phosphatidylinositol-4-phosphate 5-kinase type 1 beta [Source:NCBI gene;Acc:427243]
13. DEPDC5 ENSGALG00000006766 1592 0.735 - - - - - - 0.735 - - - DEP domain containing 5, transcript variant X6
14. C26H6ORF106 C26H6ORF106 2168 0.732 - - - - - - 0.732 - - -
15. FAM195A 4642 0.731 - - - - - - 0.731 - - - family with sequence similarity 195, member A
16. TUBGCP4 ENSGALG00000008549 352 0.731 - - - - - - 0.731 - - - tubulin gamma complex associated protein 4 [Source:HGNC Symbol;Acc:HGNC:16691]
17. EXOSC3 ENSGALG00000002426 7255 0.727 - - - - - - 0.727 - - - exosome component 3 [Source:NCBI gene;Acc:423626]
18. ATP6V1AL ENSGALG00000000048 21 0.723 - - - - - - 0.723 - - - ATPase H+ transporting V1 subunit A-like, transcript variant X2
19. TRAM2 ENSGALG00000016673 438 0.723 - - - - - - 0.723 - - - translocation associated membrane protein 2 [Source:HGNC Symbol;Acc:HGNC:16855]
20. GHDC ENSGALG00000003333 178 0.723 - - - - - - 0.723 - - - GH3 domain containing [Source:HGNC Symbol;Acc:HGNC:24438]
21. HTR2C ENSGALG00000005853 90 0.722 - - - - - - 0.722 - - - Gallus gallus 5-hydroxytryptamine receptor 2C (HTR2C), mRNA. [Source:RefSeq mRNA;Acc:NM_001318421]
22. XPNPEP3 ENSGALG00000012003 2253 0.72 - - - - - - 0.720 - - - X-prolyl aminopeptidase 3 [Source:HGNC Symbol;Acc:HGNC:28052]
23. EDN3 ENSGALG00000040880 1061 0.72 - - - - - - 0.720 - - - endothelin 3 [Source:HGNC Symbol;Acc:HGNC:3178]
24. RGL1 ENSGALG00000004728 3004 0.718 - - - - - - 0.718 - - - ral guanine nucleotide dissociation stimulator like 1 [Source:NCBI gene;Acc:424446]
25. NKD1 ENSGALG00000003767 76 0.717 - - - - - - 0.717 - - - naked cuticle homolog 1 [Source:HGNC Symbol;Acc:HGNC:17045]
26. gga-mir-1564 ENSGALG00000043133 4645 0.715 - - 0.715 - - - - - - - gga-mir-1564 [Source:miRBase;Acc:MI0007289]
27. ENSGALG00000026371 ENSGALG00000026371 106 0.712 - - - - - - 0.712 - - -
28. BBS12 142 0.711 - - - - - - 0.711 - - - Bardet-Biedl syndrome 12
29. TMED10 ENSGALG00000010318 9317 0.71 - - - - - - 0.710 - - - transmembrane p24 trafficking protein 10 [Source:NCBI gene;Acc:423362]
30. ACP1 ENSGALG00000016363 10636 0.71 - - - - - - - 0.710 - - acid phosphatase 1 [Source:NCBI gene;Acc:421909]
31. GABRB3 ENSGALG00000029392 102 0.71 - - - - - - 0.710 - - - gamma-aminobutyric acid type A receptor beta3 subunit [Source:NCBI gene;Acc:396290]
32. BCL11A ENSGALG00000034048 4111 0.708 - - - - - - - 0.708 - - B cell CLL/lymphoma 11A [Source:NCBI gene;Acc:421199]
33. LRRC42 ENSGALG00000010743 384 0.705 - - - - - - 0.705 - - - leucine rich repeat containing 42 [Source:HGNC Symbol;Acc:HGNC:28792]
34. MEAF6 ENSGALG00000002013 2208 0.705 - - - - - - 0.705 - - - MYST/Esa1 associated factor 6 [Source:NCBI gene;Acc:419617]
35. AGL ENSGALG00000005407 93 0.704 - - - - - - 0.704 - - - amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase [Source:HGNC Symbol;Acc:HGNC:321]
36. TBX3 ENSGALG00000036043 2888 0.703 - - - - - - 0.703 - - - T-box 3 [Source:NCBI gene;Acc:374202]
37. FIBIN ENSGALG00000023904 3350 0.702 - - - - - - 0.702 - - - fin bud initiation factor homolog [Source:NCBI gene;Acc:426933]
38. CPNE7 ENSGALG00000000507 54 0.701 - - - - - - 0.701 - - - copine 7 [Source:HGNC Symbol;Acc:HGNC:2320]
Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA