Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for SMG5

Gene Name Gene ID Reads Annotation
SMG5 ENSGALG00000029918 8 SMG5, nonsense mediated mRNA decay factor [Source:HGNC Symbol;Acc:HGNC:24644]











Genes with expression patterns similar to SMG5

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. SMG5 ENSGALG00000029918 8 4 - - 1.000 1.000 - 1.000 - - - 1.000 SMG5, nonsense mediated mRNA decay factor [Source:HGNC Symbol;Acc:HGNC:24644]
2. GSC ENSGALG00000010974 7 1 - - - 1.000 - - - - - - goosecoid homeobox [Source:NCBI gene;Acc:396273]
3. ABTB2 ENSGALG00000031889 9 1 - - - 1.000 - - - - - - ankyrin repeat and BTB domain containing 2 [Source:HGNC Symbol;Acc:HGNC:23842]
4. 5S_1 5S_1 2 1 - - - 1.000 - - - - - -
5. SH3GL3 ENSGALG00000006045 12 1 - - - 1.000 - - - - - - SH3 domain containing GRB2 like 3, endophilin A3 [Source:NCBI gene;Acc:395201]
6. AMOTL1 ENSGALG00000017208 5 1 - - - 1.000 - - - - - - angiomotin like 1 [Source:HGNC Symbol;Acc:HGNC:17811]
7. ANKRD44 ENSGALG00000007996 17 1 - - - 1.000 - - - - - - ankyrin repeat domain 44 [Source:NCBI gene;Acc:424055]
8. GUCY1B3 29 1 - - - 1.000 - - - - - - guanylate cyclase 1 soluble subunit beta, transcript variant X2
9. CALCRL ENSGALG00000002632 4 1 - - - 1.000 - - - - - - calcitonin receptor like receptor [Source:NCBI gene;Acc:423990]
10. ANGPTL5 ENSGALG00000017191 2 1 - - - 1.000 - - - - - - angiopoietin like 5 [Source:NCBI gene;Acc:772036]
11. SLC26A5 ENSGALG00000008222 3 1 - - - 1.000 - - - - - - solute carrier family 26 member 5 [Source:NCBI gene;Acc:417715]
12. KLHL38 ENSGALG00000038946 1 1 - - - 1.000 - - - - - - kelch like family member 38 [Source:HGNC Symbol;Acc:HGNC:34435]
13. SAPCD2 12 1 - - - 1.000 - - - - - - suppressor APC domain containing 2, transcript variant X1
14. CARD8 ENSGALG00000007698 45 1 - - - 1.000 - - - - - - caspase recruitment domain family, member 8
15. RCBTB2 ENSGALG00000017000 3 1 - - - 1.000 - - - - - - RCC1 and BTB domain containing protein 2 [Source:HGNC Symbol;Acc:HGNC:1914]
16. GPR65 ENSGALG00000010595 2 1 - - - 1.000 - - - - - - G protein-coupled receptor 65 [Source:HGNC Symbol;Acc:HGNC:4517]
17. STX19 ENSGALG00000015413 28 0.976 - - - 0.976 - - - - - - syntaxin 19 [Source:HGNC Symbol;Acc:HGNC:19300]
18. TTC36 ENSGALG00000006812 63 0.926 - - - 0.926 - - - - - - tetratricopeptide repeat domain 36 [Source:NCBI gene;Acc:419757]
19. EMX1 ENSGALG00000030516 408 0.871 - - - - - 0.871 - - - - empty spiracles homeobox 1 [Source:HGNC Symbol;Acc:HGNC:3340]
20. GATA3 ENSGALG00000029270 854 0.865 - - - - - 0.865 - - - - GATA binding protein 3 [Source:NCBI gene;Acc:419106]
21. ENSGALG00000000789 ENSGALG00000000789 24 0.864 - - - 0.864 - - - - - -
22. LRFN2 ENSGALG00000010050 28 0.86 - - - 0.860 - - - - - - leucine rich repeat and fibronectin type III domain containing 2 [Source:HGNC Symbol;Acc:HGNC:21226]
23. GAL10 GAL10 33355 0.857 - - - - - 0.857 - - - -
24. PDE1A ENSGALG00000008885 4 0.857 - - - 0.857 - - - - - - phosphodiesterase 1A [Source:HGNC Symbol;Acc:HGNC:8774]
25. GTF2A1L ENSGALG00000026747 13 0.856 - - - - - 0.856 - - - - general transcription factor IIA subunit 1 like [Source:NCBI gene;Acc:100534591]
26. LOC101750367 ENSGALG00000006693 5 0.849 - - - 0.849 - - - - - - BPI fold-containing family B member 4-like, transcript variant X3
27. ENSGALG00000020103 ENSGALG00000020103 64 0.844 - - - 0.844 - - - - - -
28. LRRC46 ENSGALG00000046384 28 0.839 - - - 0.839 - - - - - - leucine rich repeat containing 46 [Source:HGNC Symbol;Acc:HGNC:25047]
29. NR2E1 ENSGALG00000015305 3 0.822 - - - 0.822 - - - - - - nuclear receptor subfamily 2 group E member 1 [Source:NCBI gene;Acc:396082]
30. INPPL1 ENSGALG00000004336 3 0.822 - - - 0.822 - - - - - - inositol polyphosphate phosphatase like 1 [Source:HGNC Symbol;Acc:HGNC:6080]
31. ASTL ENSGALG00000037220 2775 0.817 - - - - - 0.817 - - - - astacin like metalloendopeptidase [Source:NCBI gene;Acc:423176]
32. OTOG ENSGALG00000006208 17 0.789 - - - - - 0.789 - - - - otogelin [Source:HGNC Symbol;Acc:HGNC:8516]
33. LMOD3 ENSGALG00000018946 7 0.787 - - - - - - - - - 0.787 leiomodin 3 [Source:HGNC Symbol;Acc:HGNC:6649]
34. PLPPR4 ENSGALG00000025896 120 0.787 - - - - - 0.787 - - - - phospholipid phosphatase related 4 [Source:HGNC Symbol;Acc:HGNC:23496]
35. SOCS1 ENSGALG00000007158 14 0.783 - - - 0.783 - - - - - - suppressor of cytokine signaling 1 [Source:NCBI gene;Acc:416630]
36. PRC1 ENSGALG00000012836 20 0.78 - - - - - - - - - 0.780 protein regulator of cytokinesis 1 [Source:NCBI gene;Acc:770336]
37. HPGD ENSGALG00000010769 5 0.779 - - - - - - - - - 0.779 15-hydroxyprostaglandin dehydrogenase [Source:NCBI gene;Acc:422567]
38. PREP2 PREP2 238 0.764 - - - - - - - - - 0.764
39. CASS4 ENSGALG00000007744 10 0.756 - - - 0.756 - - - - - - Cas scaffold protein family member 4 [Source:HGNC Symbol;Acc:HGNC:15878]
40. C3H6ORF154 C3H6ORF154 1078 0.749 - - - - - 0.749 - - - -
41. POMGNT2 ENSGALG00000011518 36 0.744 - - - - - 0.744 - - - - protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-) [Source:NCBI gene;Acc:428446]
42. ENSGALG00000015966 ENSGALG00000015966 4 0.742 - - - - - 0.742 - - - -
43. CERS1 ENSGALG00000003160 3 0.74 - - - - - 0.740 - - - - ceramide synthase 1 [Source:NCBI gene;Acc:420118]
44. PCDH7 ENSGALG00000033883 6 0.737 - - 0.737 - - - - - - - protocadherin 7 [Source:HGNC Symbol;Acc:HGNC:8659]
45. MEX3D ENSGALG00000001106 2 0.737 - - 0.737 - - - - - - - mex-3 RNA binding family member D, transcript variant X3
46. DDB1 ENSGALG00000042333 275 0.736 - - - - - - - - - 0.736 damage specific DNA binding protein 1 [Source:NCBI gene;Acc:374050]
47. CSF2RA ENSGALG00000016693 5 0.73 - - - - - 0.730 - - - - colony stimulating factor 2 receptor alpha subunit [Source:NCBI gene;Acc:418666]
48. gga-mir-6641 ENSGALG00000028818 1 0.73 - - - - - 0.730 - - - - gga-mir-6641 [Source:miRBase;Acc:MI0022460]
49. ENSGALG00000008594 ENSGALG00000008594 54 0.73 - - - - - 0.730 - - - -
50. RSPH1 ENSGALG00000043976 6 0.73 - - - - - 0.730 - - - - radial spoke head component 1 [Source:HGNC Symbol;Acc:HGNC:12371]
51. ADRB3 1 0.73 - - - - - 0.730 - - - - adrenoceptor beta 3
52. ASCL4 ENSGALG00000019304 1 0.73 - - - - - 0.730 - - - - achaete-scute family bHLH transcription factor 4
53. DUPD1 ENSGALG00000005019 18 0.73 - - - - - 0.730 - - - - dual specificity phosphatase and pro isomerase domain containing 1 [Source:NCBI gene;Acc:423733]
54. ENSGALG00000003440 ENSGALG00000003440 42 0.73 - - - - - 0.730 - - - -
55. KIAA0195 KIAA0195 48 0.73 - - - - - 0.730 - - - -
56. PVRL1 PVRL1 3 0.73 - - - - - 0.730 - - - -
57. Sep-12 Sep-12 4 0.73 - - - - - 0.730 - - - -
58. LOC426355 ENSGALG00000028985 3 0.73 - - - - - 0.730 - - - - t-SNARE domain-containing protein 1-like, transcript variant X2
59. ENSGALG00000001763 ENSGALG00000001763 8 0.73 - - - - - 0.730 - - - -
60. ATP6V1H ENSGALG00000013621 13 0.73 - - - - - 0.730 - - - - ATPase H+ transporting V1 subunit H [Source:NCBI gene;Acc:426199]
61. FRMD4A ENSGALG00000034992 6 0.73 - - - - - 0.730 - - - - FERM domain containing 4A [Source:HGNC Symbol;Acc:HGNC:25491]
62. LOC396098 ENSGALG00000015461 3 0.73 - - - - - 0.730 - - - - B6.1
63. SLC4A2 ENSGALG00000034284 3 0.73 - - - - - 0.730 - - - - solute carrier family 4 member 2 [Source:NCBI gene;Acc:395809]
64. ENSGALG00000008364 ENSGALG00000008364 1 0.73 - - - - - 0.730 - - - -
65. ARL10 ENSGALG00000003360 2 0.73 - - - - - 0.730 - - - - ADP ribosylation factor like GTPase 10 [Source:NCBI gene;Acc:416229]
66. PTPRC ENSGALG00000002192 10 0.73 - - - - - 0.730 - - - - protein tyrosine phosphatase, receptor type C [Source:NCBI gene;Acc:386580]
67. ST8SIA6 ENSGALG00000008671 8 0.73 - - - - - 0.730 - - - - ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6 [Source:NCBI gene;Acc:414335]
68. AMH ENSGALG00000036346 16 0.73 - - - - - 0.730 - - - - anti-Mullerian hormone [Source:NCBI gene;Acc:395887]
69. SEC61A1 ENSGALG00000005966 9 0.73 - - - - - 0.730 - - - - Sec61 translocon alpha 1 subunit [Source:HGNC Symbol;Acc:HGNC:18276]
70. HOGA1 ENSGALG00000006134 25 0.73 - - - - - 0.730 - - - - 4-hydroxy-2-oxoglutarate aldolase 1 [Source:HGNC Symbol;Acc:HGNC:25155]
71. ENSGALG00000005498 ENSGALG00000005498 11 0.73 - - - - - 0.730 - - - -
72. gga-mir-92-2 ENSGALG00000025998 2 0.73 - - - - - 0.730 - - - - gga-mir-92-2 [Source:miRBase;Acc:MI0029335]
73. MKNK2 ENSGALG00000003845 1 0.73 - - - - - 0.730 - - - - MAP kinase interacting serine/threonine kinase 2 [Source:HGNC Symbol;Acc:HGNC:7111]
74. RNF169 ENSGALG00000017309 8 0.73 - - - - - 0.730 - - - - ring finger protein 169 [Source:HGNC Symbol;Acc:HGNC:26961]
75. RHCG ENSGALG00000006635 7 0.73 - - - - - 0.730 - - - - Rh family C glycoprotein [Source:NCBI gene;Acc:415490]
76. FAM3D ENSGALG00000007152 4 0.73 - - - - - 0.730 - - - - family with sequence similarity 3 member D [Source:HGNC Symbol;Acc:HGNC:18665]
77. IL2RG ENSGALG00000005638 21 0.73 - - - - - 0.730 - - - - interleukin 2 receptor subunit gamma [Source:NCBI gene;Acc:395199]
78. HSD17B14 ENSGALG00000007727 3 0.73 - - - - - 0.730 - - - - hydroxysteroid 17-beta dehydrogenase 14
79. ENSGALG00000009953 ENSGALG00000009953 5 0.73 - - - - - 0.730 - - - -
80. RASSF7 ENSGALG00000044251 8 0.73 - - - - - 0.730 - - - - Ras association domain family member 7 [Source:HGNC Symbol;Acc:HGNC:1166]
81. COL15A1 ENSGALG00000034119 9 0.73 - - - - - 0.730 - - - - collagen type XV alpha 1 chain, transcript variant X6
82. FGFBP2 ENSGALG00000014501 12 0.73 - - - - - 0.730 - - - - fibroblast growth factor binding protein 2 [Source:NCBI gene;Acc:395094]
83. SMAD9 ENSGALG00000017050 11 0.73 - - - - - 0.730 - - - - SMAD family member 9 [Source:NCBI gene;Acc:395543]
84. DBX2 ENSGALG00000009604 367 0.729 - - - - - - - - - 0.729 developing brain homeobox 2 [Source:NCBI gene;Acc:417801]
85. NPR2 ENSGALG00000027630 871 0.728 - - - - - 0.728 - - - - natriuretic peptide receptor 2 [Source:HGNC Symbol;Acc:HGNC:7944]
86. SMS ENSGALG00000016379 11607 0.728 - - - - - 0.728 - - - - spermine synthase [Source:NCBI gene;Acc:418602]
87. ELOVL3 ENSGALG00000025772 212 0.722 - - - - - 0.722 - - - - Gallus gallus ELOVL fatty acid elongase 3 (ELOVL3), mRNA. [Source:RefSeq mRNA;Acc:NM_001318410]
88. MASTL ENSGALG00000007507 19 0.721 - - - - - 0.721 - - - - microtubule associated serine/threonine kinase like, transcript variant X2
89. gga-mir-6659 ENSGALG00000028216 6 0.721 - - - - - 0.721 - - - - gga-mir-6659 [Source:miRBase;Acc:MI0022479]
90. EMX2 ENSGALG00000009302 2103 0.717 - - - - - 0.717 - - - - empty spiracles homeobox 2 [Source:HGNC Symbol;Acc:HGNC:3341]
91. AAK1 ENSGALG00000041911 16 0.717 - - - - - 0.717 - - - - AP2 associated kinase 1 [Source:HGNC Symbol;Acc:HGNC:19679]
92. DNAAF1 ENSGALG00000003258 115 0.715 - - - - - 0.715 - - - - dynein axonemal assembly factor 1 [Source:HGNC Symbol;Acc:HGNC:30539]
93. EBF2 ENSGALG00000000242 753 0.711 - - - 0.711 - - - - - - early B cell factor 2 [Source:NCBI gene;Acc:395176]
94. PGM2L1 ENSGALG00000017304 14 0.711 - - - - - 0.711 - - - - phosphoglucomutase 2 like 1 [Source:HGNC Symbol;Acc:HGNC:20898]
95. CELA2A ENSGALG00000004568 10 0.71 - - - 0.710 - - - - - - chymotrypsin like elastase family member 2A [Source:NCBI gene;Acc:419486]
96. ANKRD2 ENSGALG00000007539 13 0.709 - - 0.709 - - - - - - - ankyrin repeat domain 2 [Source:HGNC Symbol;Acc:HGNC:495]
97. GRIN2A ENSGALG00000007278 17 0.709 - - 0.709 - - - - - - - glutamate ionotropic receptor NMDA type subunit 2A [Source:HGNC Symbol;Acc:HGNC:4585]
98. SGIP1 ENSGALG00000011113 20 0.703 - - - - - 0.703 - - - - SH3 domain GRB2 like endophilin interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:25412]
99. EPHB6 ENSGALG00000014749 30 0.703 - - - - - - - - - 0.703 EPH receptor B6 [Source:NCBI gene;Acc:418308]
100. WASF3 ENSGALG00000017103 50 0.701 - - - - - 0.701 - - - - WAS protein family member 3 [Source:HGNC Symbol;Acc:HGNC:12734]
Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA