Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for SMG1

Gene Name Gene ID Reads Annotation
SMG1 ENSGALG00000006829 1875 SMG1, nonsense mediated mRNA decay associated PI3K related kinase [Source:HGNC Symbol;Acc:HGNC:30045]











Genes with expression patterns similar to SMG1

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. SMG1 ENSGALG00000006829 1875 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 SMG1, nonsense mediated mRNA decay associated PI3K related kinase [Source:HGNC Symbol;Acc:HGNC:30045]
2. RPS19BP1 ENSGALG00000029810 5768 1.588 - - - - - - 0.799 0.789 - - ribosomal protein S19 binding protein 1 [Source:NCBI gene;Acc:418011]
3. WIPI2 ENSGALG00000004557 4961 1.558 - - - - - - - 0.815 - 0.743 WD repeat domain, phosphoinositide interacting 2 [Source:NCBI gene;Acc:416481]
4. ENTPD8L ENSGALG00000008936 731 1.547 - - - - - - 0.844 0.703 - - ectonucleoside triphosphate diphosphohydrolase 8-like
5. GGA.8379 GGA.8379 4419 1.504 - - - - - - 0.772 0.732 - -
6. NIPA2 ENSGALG00000016737 3792 1.498 - - - - - - 0.719 0.779 - - NIPA magnesium transporter 2 [Source:NCBI gene;Acc:418680]
7. UBE2E1 ENSGALG00000011286 5483 1.475 - - - - - - 0.724 0.751 - - ubiquitin conjugating enzyme E2 E1 [Source:HGNC Symbol;Acc:HGNC:12477]
8. CDR2L ENSGALG00000026295 4142 1.471 - - - - - - 0.748 0.723 - - cerebellar degeneration related protein 2 like [Source:HGNC Symbol;Acc:HGNC:29999]
9. KIAA1143 ENSGALG00000035952 6735 1.468 - - - - - - - 0.760 - 0.708 KIAA1143 [Source:NCBI gene;Acc:420709]
10. YME1L1 ENSGALG00000007492 8652 1.462 - - - - - - 0.729 0.733 - - YME1 like 1 ATPase [Source:NCBI gene;Acc:428418]
11. RPE ENSGALG00000002847 7644 1.453 - - - - - - 0.740 0.713 - - ribulose-5-phosphate-3-epimerase, transcript variant X2
12. CSTF3 ENSGALG00000011685 4711 0.907 - - - - - - 0.907 - - - cleavage stimulation factor subunit 3 [Source:NCBI gene;Acc:421595]
13. UCH-L1 UCH-L1 12697 0.898 - - - - - - 0.898 - - -
14. EIF3I ENSGALG00000003337 28832 0.894 - - - - - - 0.894 - - - eukaryotic translation initiation factor 3 subunit I [Source:NCBI gene;Acc:419653]
15. IK ENSGALG00000037172 12100 0.894 - - - - - - 0.894 - - - IK cytokine, down-regulator of HLA II [Source:NCBI gene;Acc:416133]
16. SNRNP48 ENSGALG00000013005 1468 0.891 - - - - - - 0.891 - - - small nuclear ribonucleoprotein U11/U12 subunit 48 [Source:HGNC Symbol;Acc:HGNC:21368]
17. NUP205 ENSGALG00000011662 4157 0.889 - - - - - - 0.889 - - - nucleoporin 205
18. WIPI1 ENSGALG00000004215 3359 0.883 - - - - - - 0.883 - - - WD repeat domain, phosphoinositide interacting 1 [Source:HGNC Symbol;Acc:HGNC:25471]
19. DIEXF ENSGALG00000009887 4782 0.877 - - - - - - 0.877 - - - digestive organ expansion factor homolog (zebrafish) [Source:NCBI gene;Acc:421384]
20. FAM193A ENSGALG00000015667 3075 0.874 - - - - - - 0.874 - - - family with sequence similarity 193 member A [Source:HGNC Symbol;Acc:HGNC:16822]
21. TM2D3 ENSGALG00000026271 2566 0.872 - - - - - - 0.872 - - - TM2 domain containing 3 [Source:NCBI gene;Acc:415390]
22. ASB6 ENSGALG00000004378 1080 0.866 - - - - - - 0.866 - - - ankyrin repeat and SOCS box containing 6 [Source:NCBI gene;Acc:417194]
23. LFNG ENSGALG00000038515 5178 0.865 - - - - - - 0.865 - - - LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase [Source:NCBI gene;Acc:395790]
24. KANK1 ENSGALG00000010158 3780 0.865 - - - - - - 0.865 - - - KN motif and ankyrin repeat domains 1 [Source:NCBI gene;Acc:395475]
25. USP54 ENSGALG00000005232 2749 0.862 - - - - - - 0.862 - - - ubiquitin specific peptidase 54 [Source:HGNC Symbol;Acc:HGNC:23513]
26. ZNF142 ENSGALG00000011393 2078 0.861 - - - - - - 0.861 - - - zinc finger protein 142 [Source:HGNC Symbol;Acc:HGNC:12927]
27. BRD1 ENSGALG00000029379 6047 0.861 - - - - - - 0.861 - - - bromodomain containing 1 [Source:NCBI gene;Acc:417731]
28. COPS8 ENSGALG00000033385 10166 0.858 - - - - - - 0.858 - - - COP9 signalosome subunit 8 [Source:NCBI gene;Acc:424020]
29. NDUFV3 ENSGALG00000022813 4456 0.858 - - - - - - 0.858 - - - NADH:ubiquinone oxidoreductase subunit V3 [Source:NCBI gene;Acc:418541]
30. CDC73 ENSGALG00000002469 4586 0.857 - - - - - - 0.857 - - - cell division cycle 73 [Source:NCBI gene;Acc:424356]
31. SPG11 ENSGALG00000008180 1890 0.857 - - - - - - 0.857 - - - SPG11, spatacsin vesicle trafficking associated [Source:HGNC Symbol;Acc:HGNC:11226]
32. IFNGR2 ENSGALG00000032660 2634 0.855 - - - - - - - 0.855 - - interferon gamma receptor 2 [Source:NCBI gene;Acc:418502]
33. C14orf80 C14orf80 1921 0.855 - - - - - - 0.855 - - -
34. PDE3A ENSGALG00000013143 28 0.854 - - - - - - - - - 0.854 phosphodiesterase 3A [Source:HGNC Symbol;Acc:HGNC:8778]
35. UPK3BL ENSGALG00000001885 1650 0.853 - - - - - - 0.853 - - - uroplakin 3B-like
36. CD276 ENSGALG00000001729 11630 0.853 - - - - - - - 0.853 - - CD276 molecule [Source:NCBI gene;Acc:415315]
37. SRP72 ENSGALG00000011403 13666 0.853 - - - - - - 0.853 - - - signal recognition particle 72 [Source:NCBI gene;Acc:422626]
38. CCDC101 CCDC101 9111 0.852 - - - - - - 0.852 - - -
39. HESX1 ENSGALG00000005506 203 0.852 - - - - - - 0.852 - - - HESX homeobox 1 [Source:NCBI gene;Acc:395864]
40. PARD3B ENSGALG00000042645 2893 0.851 - - - - - - 0.851 - - - par-3 family cell polarity regulator beta [Source:HGNC Symbol;Acc:HGNC:14446]
41. FRRS1L ENSGALG00000025792 1754 0.851 - - - - - - - - - 0.851 ferric chelate reductase 1 like [Source:HGNC Symbol;Acc:HGNC:1362]
42. ENSGALG00000028164 ENSGALG00000028164 3325 0.851 - - - - - - 0.851 - - -
43. PKN3 532 0.85 - - - - - - 0.850 - - - protein kinase N3, transcript variant X2
44. KIF24 ENSGALG00000005806 124 0.85 - - - - - - - - - 0.850 kinesin family member 24 [Source:HGNC Symbol;Acc:HGNC:19916]
45. NSG1 ENSGALG00000015010 5829 0.848 - - - - - - 0.848 - - - neuron specific gene family member 1 [Source:NCBI gene;Acc:395251]
46. SDK2 ENSGALG00000031895 2682 0.848 - - - - - - 0.848 - - - sidekick cell adhesion molecule 2 [Source:NCBI gene;Acc:395215]
47. SUN1 ENSGALG00000003781 3442 0.848 - - - - - - 0.848 - - - Sad1 and UNC84 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:18587]
48. SUGP1 ENSGALG00000042132 2771 0.847 - - - - - - 0.847 - - - SURP and G-patch domain containing 1 [Source:NCBI gene;Acc:428349]
49. ERMP1 ENSGALG00000000438 1136 0.846 - - - - - - 0.846 - - - endoplasmic reticulum metallopeptidase 1 [Source:HGNC Symbol;Acc:HGNC:23703]
50. SGSM3 ENSGALG00000012033 1839 0.846 - - - - - - 0.846 - - - small G protein signaling modulator 3 [Source:HGNC Symbol;Acc:HGNC:25228]
51. OMA1 ENSGALG00000010861 3328 0.846 - - - - - - 0.846 - - - OMA1 zinc metallopeptidase [Source:HGNC Symbol;Acc:HGNC:29661]
52. CMSS1 ENSGALG00000015267 2954 0.846 - - - - - - 0.846 - - - cms1 ribosomal small subunit homolog (yeast) [Source:NCBI gene;Acc:418381]
53. CANX ENSGALG00000032148 11297 0.846 - - - - - - 0.846 - - - calnexin [Source:NCBI gene;Acc:416288]
54. TNFAIP8 ENSGALG00000027761 2383 0.846 - - - - - - 0.846 - - - TNF alpha induced protein 8 [Source:NCBI gene;Acc:427384]
55. LMBR1 ENSGALG00000030379 29 0.845 - - - - - - - - - 0.845 limb development membrane protein 1 [Source:NCBI gene;Acc:373986]
56. ATG4B ENSGALG00000006298 2288 0.844 - - - - - - 0.844 - - - autophagy related 4B cysteine peptidase [Source:NCBI gene;Acc:404750]
57. RAB3IP ENSGALG00000009959 1652 0.842 - - - - - - 0.842 - - - RAB3A interacting protein, transcript variant X1
58. XPO7 ENSGALG00000001838 1875 0.842 - - - - - - 0.842 - - - exportin 7 [Source:NCBI gene;Acc:426925]
59. NSRP1 ENSGALG00000004186 1683 0.842 - - - - - - 0.842 - - - nuclear speckle splicing regulatory protein 1 [Source:HGNC Symbol;Acc:HGNC:25305]
60. SPAG9 ENSGALG00000034001 2314 0.842 - - - - - - 0.842 - - - sperm associated antigen 9 [Source:HGNC Symbol;Acc:HGNC:14524]
61. KANK4 ENSGALG00000010953 726 0.842 - - - - - - 0.842 - - - KN motif and ankyrin repeat domains 4 [Source:HGNC Symbol;Acc:HGNC:27263]
62. LSM10 ENSGALG00000002127 2519 0.841 - - - - - - 0.841 - - - LSM10, U7 small nuclear RNA associated [Source:HGNC Symbol;Acc:HGNC:17562]
63. MST1 ENSGALG00000002722 994 0.84 - - - - - - 0.840 - - - macrophage stimulating 1 (hepatocyte growth factor-like) [Source:NCBI gene;Acc:396135]
64. MBNL2 ENSGALG00000016890 3162 0.84 - - - - - - 0.840 - - - muscleblind like splicing regulator 2 [Source:NCBI gene;Acc:418784]
65. RNF20 ENSGALG00000015548 7199 0.84 - - - - - - 0.840 - - - ring finger protein 20 [Source:NCBI gene;Acc:427310]
66. WDSUB1 ENSGALG00000012574 2038 0.839 - - - - - - 0.839 - - - WD repeat, sterile alpha motif and U-box domain containing 1 [Source:NCBI gene;Acc:424331]
67. PKD2 ENSGALG00000010921 55 0.839 - - - - - - - - - 0.839 polycystin 2, transient receptor potential cation channel [Source:NCBI gene;Acc:422585]
68. GPN3 ENSGALG00000003807 6320 0.839 - - - - - - 0.839 - - - GPN-loop GTPase 3 [Source:HGNC Symbol;Acc:HGNC:30186]
69. CCNL1 ENSGALG00000009699 1033 0.837 - - - - - - 0.837 - - - cyclin L1 [Source:HGNC Symbol;Acc:HGNC:20569]
70. BMP2K ENSGALG00000010885 37 0.837 - - - - - - - - - 0.837 BMP2 inducible kinase [Source:HGNC Symbol;Acc:HGNC:18041]
71. NAT9 ENSGALG00000007723 2098 0.837 - - - - - - 0.837 - - - N-acetyltransferase 9 (putative), transcript variant X7
72. LONP1 ENSGALG00000040492 7133 0.837 - - - - - - 0.837 - - - lon peptidase 1, mitochondrial [Source:HGNC Symbol;Acc:HGNC:9479]
73. CEP290 ENSGALG00000011177 1559 0.836 - - - - - - 0.836 - - - centrosomal protein 290 [Source:HGNC Symbol;Acc:HGNC:29021]
74. SLC7A2 ENSGALG00000013627 58 0.836 - - - - - - - - - 0.836 solute carrier family 7 member 2 [Source:NCBI gene;Acc:422730]
75. TGDS ENSGALG00000016898 3206 0.835 - - - - - - 0.835 - - - TDP-glucose 4,6-dehydratase [Source:HGNC Symbol;Acc:HGNC:20324]
76. MESDC1 1013 0.835 - - - - - - 0.835 - - - mesoderm development candidate 1
77. NIN ENSGALG00000012361 2284 0.835 - - - - - - 0.835 - - - ninein [Source:HGNC Symbol;Acc:HGNC:14906]
78. DNAJC16 ENSGALG00000032832 750 0.834 - - - - - - 0.834 - - - DnaJ heat shock protein family (Hsp40) member C16 [Source:NCBI gene;Acc:429208]
79. FAM183A 242 0.833 - - - - - - 0.833 - - - family with sequence similarity 183 member A, transcript variant 2
80. UBE3B ENSGALG00000013851 1672 0.832 - - - - - - 0.832 - - - ubiquitin protein ligase E3B [Source:NCBI gene;Acc:776286]
81. ALDH18A1 ENSGALG00000034655 3038 0.832 - - - - - - 0.832 - - - aldehyde dehydrogenase 18 family member A1, transcript variant X13
82. FAM57A ENSGALG00000004820 1492 0.831 - - - - - - 0.831 - - - family with sequence similarity 57 member A [Source:HGNC Symbol;Acc:HGNC:29646]
83. FAM192A ENSGALG00000021473 10213 0.83 - - - - - - - - - 0.830 family with sequence similarity 192 member A [Source:NCBI gene;Acc:415647]
84. ATM ENSGALG00000017159 893 0.83 - - - - - - 0.830 - - - ATM serine/threonine kinase [Source:NCBI gene;Acc:395401]
85. TM9SF4 ENSGALG00000006568 567 0.83 - - - - - - 0.830 - - - transmembrane 9 superfamily member 4 [Source:HGNC Symbol;Acc:HGNC:30797]
86. GGCT ENSGALG00000030552 3446 0.829 - - - - - - 0.829 - - - gamma-glutamylcyclotransferase
87. ENSGALG00000013233 ENSGALG00000013233 3265 0.829 - - - - - - 0.829 - - -
88. SNORA31 SNORA31 183 0.828 - - - - - - 0.828 - - -
89. RAB1A ENSGALG00000031582 6929 0.828 - - - - - - 0.828 - - - RAB1A, member RAS oncogene family [Source:NCBI gene;Acc:421273]
90. HELLS ENSGALG00000005451 7094 0.827 - - - - - - 0.827 - - - helicase, lymphoid specific [Source:HGNC Symbol;Acc:HGNC:4861]
91. ITPA ENSGALG00000003250 7722 0.826 - - - - - - - 0.826 - - inosine triphosphatase [Source:NCBI gene;Acc:424390]
92. PDHX ENSGALG00000033753 2799 0.826 - - - - - - 0.826 - - - pyruvate dehydrogenase complex component X [Source:NCBI gene;Acc:423154]
93. PIK3R3 ENSGALG00000010335 374 0.825 - - - - - - 0.825 - - - phosphoinositide-3-kinase regulatory subunit 3, transcript variant X1
94. ENSGALG00000016099 ENSGALG00000016099 138 0.825 - - - - - - 0.825 - - -
95. MED16 ENSGALG00000001978 2387 0.825 - - - - - - 0.825 - - - mediator complex subunit 16 [Source:HGNC Symbol;Acc:HGNC:17556]
96. USP20 ENSGALG00000041104 3186 0.824 - - - - - - 0.824 - - - ubiquitin specific peptidase 20 [Source:HGNC Symbol;Acc:HGNC:12619]
97. GAS6 ENSGALG00000016820 481 0.824 - - - - - - 0.824 - - - growth arrest specific 6 [Source:HGNC Symbol;Acc:HGNC:4168]
98. C3orf58 ENSGALG00000002347 27 0.823 - - - - - - - - - 0.823 chromosome 3 open reading frame 58 [Source:HGNC Symbol;Acc:HGNC:28490]
99. DNAJC12 ENSGALG00000002769 1418 0.823 - - - - - - 0.823 - - - DnaJ heat shock protein family (Hsp40) member C12 [Source:NCBI gene;Acc:423647]
100. CHOCT-1 CHOCT-1 3422 0.823 - - - - - - 0.823 - - -

There are 424 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA