Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for SMDT1

Gene Name Gene ID Reads Annotation
SMDT1 ENSGALG00000011897 9360 single-pass membrane protein with aspartate rich tail 1 [Source:HGNC Symbol;Acc:HGNC:25055]











Genes with expression patterns similar to SMDT1

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. SMDT1 ENSGALG00000011897 9360 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 single-pass membrane protein with aspartate rich tail 1 [Source:HGNC Symbol;Acc:HGNC:25055]
2. ASB9 ENSGALG00000016563 2780 2.22 - - - 0.722 - - - 0.786 - 0.712 ankyrin repeat and SOCS box containing 9 [Source:NCBI gene;Acc:418625]
3. MTERFD1 MTERFD1 3640 1.772 - - - - - - - 0.929 - 0.843
4. HNRNPD ENSGALG00000011184 10686 1.753 - - - - - - 0.877 0.876 - - heterogeneous nuclear ribonucleoprotein D [Source:NCBI gene;Acc:422602]
5. TSC22D2 ENSGALG00000027591 6594 1.752 - - - - - - 0.811 0.941 - - TSC22 domain family member 2 [Source:HGNC Symbol;Acc:HGNC:29095]
6. MARC1 ENSGALG00000009453 5675 1.75 - - - - - - 0.849 0.901 - - mitochondrial amidoxime reducing component 1 [Source:NCBI gene;Acc:428563]
7. NDUFB3 ENSGALG00000008239 15511 1.743 - - - - - - 0.802 0.941 - - NADH:ubiquinone oxidoreductase subunit B3 [Source:NCBI gene;Acc:424078]
8. CARS2 ENSGALG00000016847 3814 1.739 - - - - - - - 0.890 0.849 - cysteinyl-tRNA synthetase 2, mitochondrial [Source:HGNC Symbol;Acc:HGNC:25695]
9. PGAM5 ENSGALG00000002137 7700 1.729 - - - - - - 0.808 0.921 - - PGAM family member 5, mitochondrial serine/threonine protein phosphatase [Source:HGNC Symbol;Acc:HGNC:28763]
10. CHMP3 ENSGALG00000015805 11581 1.726 - - - - - - 0.792 0.934 - - charged multivesicular body protein 3
11. CAMSAP2 ENSGALG00000002145 6109 1.726 - - - - - - - 0.916 - 0.810 calmodulin regulated spectrin associated protein family member 2 [Source:HGNC Symbol;Acc:HGNC:29188]
12. SNAP29 ENSGALG00000040128 3581 1.725 - - - - - - 0.797 0.928 - - synaptosome associated protein 29 [Source:NCBI gene;Acc:416766]
13. BRCC3 ENSGALG00000005383 4844 1.713 - - - - - - 0.792 0.921 - - BRCA1/BRCA2-containing complex subunit 3 [Source:HGNC Symbol;Acc:HGNC:24185]
14. ERGIC2 ENSGALG00000007183 12870 1.705 - - - - - - 0.769 0.936 - - ERGIC and golgi 2 [Source:NCBI gene;Acc:417697]
15. GTF2A2 ENSGALG00000003793 5957 1.702 - - - - - - 0.834 0.868 - - general transcription factor IIA subunit 2 [Source:NCBI gene;Acc:770910]
16. CHMP6 ENSGALG00000026428 18026 1.69 - - - - - - 0.757 0.933 - - charged multivesicular body protein 6 [Source:NCBI gene;Acc:428673]
17. SMARCC1 ENSGALG00000032642 4842 1.671 - - - - - - - 0.890 - 0.781 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1 [Source:HGNC Symbol;Acc:HGNC:11104]
18. ALMS1 ENSGALG00000044620 570 1.669 - - - - - - - - 0.859 0.810 ALMS1, centrosome and basal body associated protein, transcript variant X1
19. FANCB ENSGALG00000016569 1193 1.668 - - - - - - - - 0.867 0.801 FA complementation group B [Source:NCBI gene;Acc:418628]
20. BCAP29 ENSGALG00000008009 8519 1.664 - - - - - - 0.767 0.897 - - B cell receptor associated protein 29 [Source:NCBI gene;Acc:417702]
21. MED24 ENSGALG00000013506 5403 1.656 - - - - - - - 0.929 - 0.727 mediator complex subunit 24 [Source:NCBI gene;Acc:426134]
22. ALDH7A1 ENSGALG00000008229 5891 1.653 - - - - - - 0.835 - - 0.818 aldehyde dehydrogenase 7 family member A1 [Source:HGNC Symbol;Acc:HGNC:877]
23. gga-mir-1772 ENSGALG00000025300 2892 1.652 - - - - - - 0.744 0.908 - - gga-mir-1772 [Source:miRBase;Acc:MI0007515]
24. UBE2D1 ENSGALG00000021213 5876 1.652 - - - - - - 0.734 0.918 - - ubiquitin conjugating enzyme E2 D1 [Source:NCBI gene;Acc:423641]
25. NDUFS6 ENSGALG00000013191 15874 1.651 - - - - - - - 0.894 0.757 - NADH:ubiquinone oxidoreductase subunit S6 [Source:HGNC Symbol;Acc:HGNC:7713]
26. ITGA9 ENSGALG00000029378 415 1.648 - - - - - - - 0.868 - 0.780 integrin subunit alpha 9 [Source:NCBI gene;Acc:420757]
27. CKAP2 ENSGALG00000017025 25020 1.642 - - - - - - - 0.930 - 0.712 cytoskeleton associated protein 2 [Source:NCBI gene;Acc:418882]
28. PPCS ENSGALG00000004882 5759 1.641 - - - - - - 0.726 0.915 - - phosphopantothenoylcysteine synthetase [Source:HGNC Symbol;Acc:HGNC:25686]
29. FASTKD3 ENSGALG00000033521 1186 1.64 - - - - - - - - 0.847 0.793 FAST kinase domains 3 [Source:HGNC Symbol;Acc:HGNC:28758]
30. SMC6 ENSGALG00000016467 3321 1.637 - - - - - - - 0.893 - 0.744 Gallus gallus structural maintenance of chromosomes 6 (SMC6), mRNA. [Source:RefSeq mRNA;Acc:NM_001321614]
31. MRPL20 ENSGALG00000001542 28764 1.637 - - - - - - 0.785 0.852 - - mitochondrial ribosomal protein L20 [Source:NCBI gene;Acc:770979]
32. PCLO 249 1.633 - - - - - - - - 0.850 0.783 piccolo presynaptic cytomatrix protein
33. RUVBL1 ENSGALG00000005931 9379 1.629 - - - - - - 0.775 0.854 - - RuvB like AAA ATPase 1 [Source:NCBI gene;Acc:416022]
34. CRYM ENSGALG00000002484 3558 1.628 - - - - - - - - 0.845 0.783 crystallin mu [Source:HGNC Symbol;Acc:HGNC:2418]
35. ENSGALG00000014190 ENSGALG00000014190 5735 1.626 - - - - - - - 0.898 0.728 -
36. CTSO ENSGALG00000009373 4186 1.611 - - - - - - 0.779 - - 0.832 cathepsin O [Source:NCBI gene;Acc:422410]
37. TXNDC5 ENSGALG00000012784 4678 1.611 - - - - - - - 0.904 - 0.707 thioredoxin domain containing 5 [Source:NCBI gene;Acc:420867]
38. RBBP8 ENSGALG00000014982 3255 1.608 - - - - - - - - 0.845 0.763 RB binding protein 8, endonuclease [Source:HGNC Symbol;Acc:HGNC:9891]
39. RNMTL1 RNMTL1 2889 1.608 - - - - - - - 0.795 0.813 -
40. TBL1XR1 ENSGALG00000039182 16983 1.596 - - - - - - 0.722 0.874 - - transducin beta like 1 X-linked receptor 1 [Source:NCBI gene;Acc:426284]
41. DDRGK1 ENSGALG00000016003 9098 1.595 - - - - - - - 0.803 0.792 - DDRGK domain containing 1 [Source:HGNC Symbol;Acc:HGNC:16110]
42. FANCL ENSGALG00000030022 7423 1.587 - - - - - - 0.811 - - 0.776 FA complementation group L [Source:NCBI gene;Acc:421202]
43. OAF ENSGALG00000006715 12518 1.587 - - - - - - 0.728 0.859 - - out at first homolog [Source:NCBI gene;Acc:395161]
44. NAA20 ENSGALG00000012587 11349 1.585 - - - - - - 0.765 - 0.820 - N(alpha)-acetyltransferase 20, NatB catalytic subunit [Source:HGNC Symbol;Acc:HGNC:15908]
45. CUL3 ENSGALG00000005108 9571 1.584 - - - 0.712 - - 0.872 - - - cullin 3 [Source:HGNC Symbol;Acc:HGNC:2553]
46. MED17 ENSGALG00000017218 5821 1.582 - - - - - - 0.772 - 0.810 - mediator complex subunit 17 [Source:NCBI gene;Acc:419000]
47. GTF3C1 ENSGALG00000007387 5788 1.577 - - - - - - - - 0.796 0.781 general transcription factor IIIC subunit 1 [Source:HGNC Symbol;Acc:HGNC:4664]
48. SMC4 ENSGALG00000009553 15715 1.574 - - - - - - 0.851 - - 0.723 structural maintenance of chromosomes 4 [Source:NCBI gene;Acc:395189]
49. SPG21 ENSGALG00000007262 8050 1.571 - - - - - - - 0.843 - 0.728 SPG21, maspardin [Source:NCBI gene;Acc:415526]
50. TAF15 ENSGALG00000002060 12320 1.569 - - - - - - 0.760 - 0.809 - TATA-box binding protein associated factor 15 [Source:HGNC Symbol;Acc:HGNC:11547]
51. MTSS1 ENSGALG00000041969 1312 1.567 - - - - - - - - 0.767 0.800 MTSS1, I-BAR domain containing [Source:NCBI gene;Acc:420336]
52. SPDL1 ENSGALG00000001942 4403 1.563 - - - - - - 0.761 - - 0.802 spindle apparatus coiled-coil protein 1 [Source:HGNC Symbol;Acc:HGNC:26010]
53. UCHL3 ENSGALG00000016921 16208 1.558 - - - - - - 0.778 - - 0.780 ubiquitin C-terminal hydrolase L3 [Source:NCBI gene;Acc:395626]
54. ENSGALG00000014171 ENSGALG00000014171 10383 1.557 - - - - - - - - 0.773 0.784
55. DLD ENSGALG00000007931 11011 1.556 - - - - - - 0.714 0.842 - - dihydrolipoamide dehydrogenase [Source:NCBI gene;Acc:417699]
56. TMX3 ENSGALG00000013757 6387 1.556 - - - - - - 0.809 - - 0.747 Gallus gallus thioredoxin related transmembrane protein 3 (TMX3), transcript variant 1, mRNA. [Source:RefSeq mRNA;Acc:NM_001321606]
57. Mar-05 Mar-05 6330 1.555 - - - - - - 0.722 0.833 - -
58. RRP1B ENSGALG00000035696 12309 1.551 - - - - - - 0.778 - 0.773 - ribosomal RNA processing 1B [Source:NCBI gene;Acc:425237]
59. ENSGALG00000009044 ENSGALG00000009044 14492 1.547 - - - - - - 0.767 - - 0.780
60. SLC30A5 ENSGALG00000014787 5573 1.547 - - - - - - 0.762 - - 0.785 solute carrier family 30 member 5 [Source:NCBI gene;Acc:427173]
61. KMT2C 6306 1.545 - - - - - - 0.767 - - 0.778 lysine methyltransferase 2C, transcript variant X14
62. CNOT8 ENSGALG00000003950 8271 1.542 - - - - - - 0.756 0.786 - - CCR4-NOT transcription complex subunit 8 [Source:NCBI gene;Acc:416255]
63. VWF ENSGALG00000017272 1012 1.539 - - - - - - - - 0.814 0.725 Gallus gallus von Willebrand factor (VWF), mRNA. [Source:RefSeq mRNA;Acc:NM_001318464]
64. TLL1 ENSGALG00000009567 1821 1.529 - - - - - - 0.719 - - 0.810 tolloid like 1 [Source:NCBI gene;Acc:395441]
65. SEC14L1 ENSGALG00000001684 2776 1.527 - - - - - - 0.765 - - 0.762 SEC14 like lipid binding 1 [Source:HGNC Symbol;Acc:HGNC:10698]
66. MED28 ENSGALG00000007138 7686 1.526 - - - - - - 0.734 0.792 - - mediator complex subunit 28 [Source:HGNC Symbol;Acc:HGNC:24628]
67. VATB VATB 13756 1.525 - - - - - - 0.789 - 0.736 -
68. UPF2 ENSGALG00000033772 9548 1.524 - - - - - - 0.740 - - 0.784 UPF2, regulator of nonsense mediated mRNA decay [Source:HGNC Symbol;Acc:HGNC:17854]
69. ANKRD11 ENSGALG00000006222 12327 1.524 - - - - - - 0.738 - - 0.786 ankyrin repeat domain 11, transcript variant X2
70. PFDN1 ENSGALG00000000946 18822 1.524 - - - - - - 0.715 0.809 - - prefoldin subunit 1 [Source:NCBI gene;Acc:416142]
71. SNRNP48 ENSGALG00000013005 1468 1.523 - - - - - - - - 0.761 0.762 small nuclear ribonucleoprotein U11/U12 subunit 48 [Source:HGNC Symbol;Acc:HGNC:21368]
72. FBXO5 ENSGALG00000013607 6156 1.523 - - - - - - 0.822 - - 0.701 F-box protein 5 [Source:HGNC Symbol;Acc:HGNC:13584]
73. MRPL50 ENSGALG00000015543 11649 1.521 - - - - - - 0.777 - - 0.744 mitochondrial ribosomal protein L50 [Source:NCBI gene;Acc:427307]
74. ATP6V0A1 ENSGALG00000003256 4408 1.51 - - - - - - - - 0.762 0.748 ATPase H+ transporting V0 subunit a1 [Source:NCBI gene;Acc:395474]
75. MCPH1 ENSGALG00000016332 2097 1.509 - - - - - - 0.711 - - 0.798 microcephalin 1 [Source:NCBI gene;Acc:100125976]
76. PTP4A2 ENSGALG00000003265 24826 1.503 - - - - - - 0.770 - - 0.733 protein tyrosine phosphatase type IVA, member 2 [Source:HGNC Symbol;Acc:HGNC:9635]
77. GSTAL2 ENSGALG00000028551 4899 1.502 - - - - - - 0.702 - - 0.800 glutathione S-transferase alpha-like 2, transcript variant X4
78. TMEM115 ENSGALG00000026965 13050 1.5 - - 0.768 - - - - - - 0.732 transmembrane protein 115 [Source:HGNC Symbol;Acc:HGNC:30055]
79. ZDHHC7 ENSGALG00000042522 1774 1.499 - - - - - - 0.701 - 0.798 - zinc finger DHHC-type containing 7 [Source:HGNC Symbol;Acc:HGNC:18459]
80. BSG ENSGALG00000001328 37947 1.497 - - - - - - 0.747 - - 0.750 basigin (Ok blood group) [Source:NCBI gene;Acc:770363]
81. GRTP1 ENSGALG00000016828 3145 1.491 - - - - - - 0.744 - - 0.747 growth hormone regulated TBC protein 1 [Source:HGNC Symbol;Acc:HGNC:20310]
82. FSTL4 ENSGALG00000031487 529 1.489 - - - - - - - - 0.719 0.770 follistatin like 4 [Source:NCBI gene;Acc:395163]
83. DIAPH3 ENSGALG00000016937 1069 1.487 - - - - - 0.707 - - - 0.780 diaphanous related formin 3 [Source:HGNC Symbol;Acc:HGNC:15480]
84. ABL ABL 9532 1.48 - - - - - - 0.737 - 0.743 -
85. NEO1 ENSGALG00000001774 10165 1.48 - - - - - - 0.715 - - 0.765 neogenin 1 [Source:HGNC Symbol;Acc:HGNC:7754]
86. NDUFC2 ENSGALG00000029172 26136 1.469 - - 0.716 - - - 0.753 - - - NADH:ubiquinone oxidoreductase subunit C2 [Source:NCBI gene;Acc:404751]
87. ZBED4 ENSGALG00000032659 5313 1.465 - - - - - - 0.733 - - 0.732 zinc finger BED-type containing 4 [Source:NCBI gene;Acc:417734]
88. SLC39A13 ENSGALG00000008122 2003 1.465 - - - - - - - - 0.715 0.750 solute carrier family 39 member 13 [Source:NCBI gene;Acc:423183]
89. TRRAP ENSGALG00000003596 6032 1.464 - - - - - - 0.757 - - 0.707 transformation/transcription domain associated protein [Source:HGNC Symbol;Acc:HGNC:12347]
90. CCNB2 ENSGALG00000004161 50324 1.463 - - 0.746 - - - - - - 0.717 cyclin B2 [Source:NCBI gene;Acc:415400]
91. LOC426385 ENSGALG00000026301 2703 1.461 - - - - - - 0.701 - - 0.760 serine/threonine kinase 35-like, transcript variant X2
92. RAB10 ENSGALG00000016535 5272 1.458 - - - - - - 0.746 - - 0.712 RAB10, member RAS oncogene family [Source:NCBI gene;Acc:421994]
93. ZNHIT3 ENSGALG00000026031 8652 1.455 - - 0.712 - - - 0.743 - - - zinc finger HIT-type containing 3 [Source:HGNC Symbol;Acc:HGNC:12309]
94. NAA38 ENSGALG00000045783 11229 1.453 - - - - - - 0.707 0.746 - - N(alpha)-acetyltransferase 38, NatC auxiliary subunit, transcript variant X3
95. COX5A ENSGALG00000014121 55281 1.452 - - - - - - 0.708 - - 0.744 cytochrome c oxidase subunit 5A [Source:HGNC Symbol;Acc:HGNC:2267]
96. PPDPF ENSGALG00000005849 16711 1.438 - - - - - - 0.710 0.728 - - pancreatic progenitor cell differentiation and proliferation factor [Source:NCBI gene;Acc:419245]
97. HOXB-7 HOXB-7 2066 1.434 - - - - - - 0.712 - 0.722 -
98. HSPA12A ENSGALG00000009248 7783 1.425 - - - - - - - - 0.712 0.713 heat shock protein family A (Hsp70) member 12A [Source:HGNC Symbol;Acc:HGNC:19022]
99. PTCH1 ENSGALG00000012620 4840 1.403 - - - - - - - - 0.703 0.700 patched 1 [Source:NCBI gene;Acc:395806]
100. AHCTF1 ENSGALG00000010630 4809 0.953 - - - - - - - 0.953 - - AT-hook containing transcription factor 1 [Source:NCBI gene;Acc:421484]

There are 1117 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA