Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for SMC3

Gene Name Gene ID Reads Annotation
SMC3 ENSGALG00000008585 16618 structural maintenance of chromosomes 3 [Source:NCBI gene;Acc:395188]











Genes with expression patterns similar to SMC3

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. SMC3 ENSGALG00000008585 16618 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 - 1.000 structural maintenance of chromosomes 3 [Source:NCBI gene;Acc:395188]
2. RNF113A ENSGALG00000000538 3985 1.926 - - - - 0.959 - - 0.967 - - ring finger protein 113A [Source:NCBI gene;Acc:419956]
3. DNAJC2 ENSGALG00000008249 28064 1.807 - - - - 0.963 - 0.844 - - - DnaJ heat shock protein family (Hsp40) member C2 [Source:NCBI gene;Acc:417717]
4. CCDC59 ENSGALG00000028648 9272 1.8 - - - - 0.961 - - 0.839 - - coiled-coil domain containing 59 [Source:HGNC Symbol;Acc:HGNC:25005]
5. NOL6 ENSGALG00000030730 7191 1.789 - - - - 0.959 - 0.830 - - - nucleolar protein 6
6. ALYREF ENSGALG00000007237 48479 1.745 - - - - - - 0.836 0.909 - - Aly/REF export factor [Source:NCBI gene;Acc:769169]
7. COX4I1 68632 1.669 - - - - 0.838 - 0.831 - - - cytochrome c oxidase subunit 4I1, transcript variant X1
8. ETF1 ENSGALG00000002262 14560 1.663 - - - - 0.956 - 0.707 - - - eukaryotic translation termination factor 1 [Source:HGNC Symbol;Acc:HGNC:3477]
9. TCOF1 ENSGALG00000005535 24554 1.52 - - - - - - 0.784 0.736 - - treacle ribosome biogenesis factor 1 [Source:NCBI gene;Acc:416276]
10. SLC25A6_1 ENSGALG00000016691 159994 1.511 - - - - 0.794 - - 0.717 - - solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
11. NOC4L ENSGALG00000002272 9644 0.994 - - - - - - - 0.994 - - nucleolar complex associated 4 homolog [Source:NCBI gene;Acc:416798]
12. EIF3D ENSGALG00000012529 40887 0.968 - - - - - - - 0.968 - - eukaryotic translation initiation factor 3 subunit D [Source:HGNC Symbol;Acc:HGNC:3278]
13. CHMP5 ENSGALG00000013160 13347 0.968 - - - - - - - 0.968 - - charged multivesicular body protein 5 [Source:NCBI gene;Acc:420968]
14. PDCD2L 4843 0.968 - - - - - - - 0.968 - - programmed cell death 2-like
15. RBFA ENSGALG00000036067 6542 0.968 - - - - - - - 0.968 - - ribosome binding factor A (putative) [Source:NCBI gene;Acc:420806]
16. ATL1 ENSGALG00000012339 3789 0.967 - - - - - - - 0.967 - - atlastin GTPase 1 [Source:HGNC Symbol;Acc:HGNC:11231]
17. HBXIP HBXIP 8637 0.967 - - - - - - - 0.967 - -
18. ENSGALG00000010034 ENSGALG00000010034 3293 0.967 - - - - - - - 0.967 - -
19. TMTC2 ENSGALG00000010975 7040 0.967 - - - - - - - 0.967 - - transmembrane and tetratricopeptide repeat containing 2 [Source:HGNC Symbol;Acc:HGNC:25440]
20. CASP3 ENSGALG00000010638 11572 0.967 - - - - - - - 0.967 - - caspase 3 [Source:NCBI gene;Acc:395476]
21. FAM125B FAM125B 2953 0.966 - - - - - - - 0.966 - -
22. RIC8A ENSGALG00000004191 6094 0.966 - - - - - - - 0.966 - - RIC8 guanine nucleotide exchange factor A [Source:NCBI gene;Acc:422987]
23. RRN3 ENSGALG00000041989 3934 0.966 - - - - - - - 0.966 - - RRN3 homolog, RNA polymerase I transcription factor [Source:NCBI gene;Acc:416414]
24. UBALD1 ENSGALG00000007619 8536 0.966 - - - - - - - 0.966 - - UBA like domain containing 1 [Source:HGNC Symbol;Acc:HGNC:29576]
25. NPFF1 NPFF1 3177 0.966 - - - - - - - 0.966 - -
26. SCLT1 2397 0.966 - - - - - - - 0.966 - - sodium channel and clathrin linker 1, transcript variant X6
27. JKAMP ENSGALG00000012009 5781 0.966 - - - - - - - 0.966 - - JNK1/MAPK8-associated membrane protein [Source:NCBI gene;Acc:423530]
28. LUC7L2 ENSGALG00000036238 11817 0.966 - - - - 0.966 - - - - - LUC7 like 2, pre-mRNA splicing factor [Source:NCBI gene;Acc:417971]
29. MADD ENSGALG00000008181 2273 0.966 - - - - - - - 0.966 - - MAP kinase activating death domain [Source:HGNC Symbol;Acc:HGNC:6766]
30. CARKD CARKD 2914 0.966 - - - - - - - 0.966 - -
31. GGA3 ENSGALG00000007992 3566 0.966 - - - - - - - 0.966 - - golgi associated, gamma adaptin ear containing, ARF binding protein 3 [Source:NCBI gene;Acc:422121]
32. USP1 ENSGALG00000010957 8297 0.965 - - - - 0.965 - - - - - ubiquitin specific peptidase 1 [Source:NCBI gene;Acc:424685]
33. KIAA0895L 1739 0.965 - - - - - - - 0.965 - - KIAA0895 like, transcript variant X4
34. DDX24 ENSGALG00000010884 5485 0.965 - - - - - - - 0.965 - - DEAD-box helicase 24 [Source:HGNC Symbol;Acc:HGNC:13266]
35. FXN ENSGALG00000015108 1867 0.965 - - - - - - - 0.965 - - frataxin [Source:HGNC Symbol;Acc:HGNC:3951]
36. C4orf27 C4orf27 16724 0.964 - - - - 0.964 - - - - -
37. YTHDC2 2266 0.964 - - - - - - - 0.964 - - YTH domain containing 2, transcript variant X3
38. KCTD9 ENSGALG00000000275 3455 0.964 - - - - 0.964 - - - - - potassium channel tetramerization domain containing 9 [Source:NCBI gene;Acc:419526]
39. CHTOP ENSGALG00000042129 24112 0.964 - - - - - - - 0.964 - - chromatin target of PRMT1 [Source:HGNC Symbol;Acc:HGNC:24511]
40. NECAP1 ENSGALG00000037656 5181 0.963 - - - - - - - 0.963 - - NECAP endocytosis associated 1 [Source:HGNC Symbol;Acc:HGNC:24539]
41. TMEM18 ENSGALG00000028744 11779 0.963 - - - - 0.963 - - - - - transmembrane protein 18 [Source:NCBI gene;Acc:421911]
42. HMGB3 ENSGALG00000009071 12011 0.963 - - - - 0.963 - - - - - high mobility group box 3 [Source:NCBI gene;Acc:396232]
43. BCL9 ENSGALG00000037655 4620 0.963 - - - - 0.963 - - - - - B cell CLL/lymphoma 9 [Source:HGNC Symbol;Acc:HGNC:1008]
44. PGM1 ENSGALG00000011016 3391 0.963 - - - - - - - 0.963 - - phosphoglucomutase 1 [Source:NCBI gene;Acc:424691]
45. TRIM33 ENSGALG00000001976 7404 0.962 - - - - 0.962 - - - - - tripartite motif containing 33 [Source:HGNC Symbol;Acc:HGNC:16290]
46. THBS1 ENSGALG00000009626 3521 0.962 - - - - 0.962 - - - - - thrombospondin 1 [Source:NCBI gene;Acc:373987]
47. M6PR ENSGALG00000031681 9442 0.961 - - - - 0.961 - - - - - mannose-6-phosphate receptor, cation dependent, transcript variant X3
48. ABCC1 ENSGALG00000006646 2596 0.961 - - - - 0.961 - - - - - ATP binding cassette subfamily C member 1 [Source:NCBI gene;Acc:395416]
49. RILPL2 ENSGALG00000003321 5632 0.96 - - - - 0.960 - - - - - Rab interacting lysosomal protein like 2 [Source:HGNC Symbol;Acc:HGNC:28787]
50. WHSC1L1 4065 0.959 - - - - 0.959 - - - - - Wolf-Hirschhorn syndrome candidate 1-like 1, transcript variant X8
51. TM2D2 ENSGALG00000003356 7088 0.959 - - - - 0.959 - - - - - TM2 domain containing 2 [Source:HGNC Symbol;Acc:HGNC:24127]
52. SAMM50 ENSGALG00000014194 20437 0.959 - - - - 0.959 - - - - - SAMM50 sorting and assembly machinery component [Source:NCBI gene;Acc:418234]
53. ENSGALG00000000360 ENSGALG00000000360 15320 0.959 - - - - 0.959 - - - - -
54. gga-mir-6584 ENSGALG00000028834 1481 0.958 - - - - 0.958 - - - - - gga-mir-6584 [Source:miRBase;Acc:MI0022404]
55. MRPS11 ENSGALG00000006777 16009 0.958 - - - - 0.958 - - - - - mitochondrial ribosomal protein S11 [Source:NCBI gene;Acc:415498]
56. TBRG4 ENSGALG00000038102 9269 0.958 - - - - 0.958 - - - - - transforming growth factor beta regulator 4 [Source:HGNC Symbol;Acc:HGNC:17443]
57. MAP1B ENSGALG00000014999 6288 0.958 - - - - 0.958 - - - - - microtubule associated protein 1B
58. EPB41L1 ENSGALG00000034171 3616 0.957 - - - - 0.957 - - - - - erythrocyte membrane protein band 4.1 like 1 [Source:HGNC Symbol;Acc:HGNC:3378]
59. PPAPDC1B PPAPDC1B 6698 0.957 - - - - 0.957 - - - - -
60. RAE1 ENSGALG00000007653 8930 0.957 - - - - 0.957 - - - - - ribonucleic acid export 1 [Source:NCBI gene;Acc:419324]
61. MMADHC ENSGALG00000012473 9026 0.957 - - - - - - - 0.957 - - methylmalonic aciduria and homocystinuria, cblD type [Source:NCBI gene;Acc:424311]
62. PGAM5 ENSGALG00000002137 7700 0.957 - - - - 0.957 - - - - - PGAM family member 5, mitochondrial serine/threonine protein phosphatase [Source:HGNC Symbol;Acc:HGNC:28763]
63. TBC1D7 ENSGALG00000012731 4891 0.957 - - - - 0.957 - - - - - TBC1 domain family member 7 [Source:HGNC Symbol;Acc:HGNC:21066]
64. AGPAT3 ENSGALG00000031932 6903 0.957 - - - - 0.957 - - - - - 1-acylglycerol-3-phosphate O-acyltransferase 3 [Source:HGNC Symbol;Acc:HGNC:326]
65. MYEOV2 MYEOV2 5155 0.957 - - - - 0.957 - - - - -
66. UQCRC2 ENSGALG00000002490 23477 0.956 - - - - 0.956 - - - - - ubiquinol-cytochrome c reductase core protein 2 [Source:HGNC Symbol;Acc:HGNC:12586]
67. NDST2 ENSGALG00000005107 4224 0.956 - - - - 0.956 - - - - - N-deacetylase and N-sulfotransferase 2, transcript variant X2
68. IBA57 ENSGALG00000005328 4362 0.956 - - - - 0.956 - - - - - IBA57 homolog, iron-sulfur cluster assembly [Source:NCBI gene;Acc:420396]
69. HYOU1 ENSGALG00000007659 3555 0.956 - - - - 0.956 - - - - - hypoxia up-regulated 1 [Source:NCBI gene;Acc:428251]
70. ARHGAP11A ENSGALG00000009731 6817 0.956 - - - - - - - 0.956 - - Rho GTPase activating protein 11A [Source:NCBI gene;Acc:423289]
71. TCF7L2 ENSGALG00000008883 13688 0.956 - - - - 0.956 - - - - - transcription factor 7-like 2 (T-cell specific, HMG-box) [Source:NCBI gene;Acc:395508]
72. MRPL46 ENSGALG00000006782 5033 0.956 - - - - 0.956 - - - - - mitochondrial ribosomal protein L46 [Source:NCBI gene;Acc:415499]
73. RBM26 ENSGALG00000016910 13769 0.955 - - - - 0.955 - - - - - RNA binding motif protein 26 [Source:HGNC Symbol;Acc:HGNC:20327]
74. C15H12ORF49 C15H12ORF49 13250 0.955 - - - - 0.955 - - - - -
75. PUF60 ENSGALG00000039901 26902 0.955 - - - - 0.955 - - - - - poly(U) binding splicing factor 60 [Source:NCBI gene;Acc:426402]
76. RALB ENSGALG00000026493 14590 0.955 - - - - 0.955 - - - - - RAS like proto-oncogene B [Source:HGNC Symbol;Acc:HGNC:9840]
77. MRPL22 ENSGALG00000003919 2760 0.955 - - - - 0.955 - - - - - mitochondrial ribosomal protein L22 [Source:HGNC Symbol;Acc:HGNC:14480]
78. INCENP ENSGALG00000007537 16617 0.955 - - - - 0.955 - - - - - inner centromere protein [Source:NCBI gene;Acc:396270]
79. SEC61A2 ENSGALG00000036300 4235 0.955 - - - - 0.955 - - - - - Gallus gallus Sec61 translocon alpha 2 subunit (SEC61A2), mRNA. [Source:RefSeq mRNA;Acc:NM_001321620]
80. MED1 ENSGALG00000001708 9556 0.955 - - - - 0.955 - - - - - mediator complex subunit 1 [Source:HGNC Symbol;Acc:HGNC:9234]
81. SEC63 ENSGALG00000015308 11596 0.954 - - - - 0.954 - - - - - SEC63 homolog, protein translocation regulator [Source:HGNC Symbol;Acc:HGNC:21082]
82. TMEM39B ENSGALG00000003287 4125 0.954 - - - - 0.954 - - - - - transmembrane protein 39B [Source:NCBI gene;Acc:419650]
83. PSMD14 ENSGALG00000011128 13335 0.954 - - - - 0.954 - - - - - proteasome 26S subunit, non-ATPase 14 [Source:NCBI gene;Acc:424189]
84. CENPE ENSGALG00000013208 12337 0.954 - - - - 0.954 - - - - - centromere protein E, transcript variant X4
85. VPS8 ENSGALG00000006704 5419 0.954 - - - - 0.954 - - - - - VPS8, CORVET complex subunit [Source:HGNC Symbol;Acc:HGNC:29122]
86. ABCF2 ENSGALG00000034573 15639 0.954 - - - - 0.954 - - - - - ATP binding cassette subfamily F member 2 [Source:NCBI gene;Acc:426038]
87. BRP44L BRP44L 30452 0.953 - - - - 0.953 - - - - -
88. HTRA3 ENSGALG00000034673 512 0.953 - - - - 0.953 - - - - - HtrA serine peptidase 3 [Source:HGNC Symbol;Acc:HGNC:30406]
89. MCM4 ENSGALG00000012915 13151 0.952 - - - - 0.952 - - - - - minichromosome maintenance complex component 4
90. ENSGALG00000026041 ENSGALG00000026041 13390 0.952 - - - - 0.952 - - - - -
91. NUP37 ENSGALG00000012759 9985 0.951 - - - - 0.951 - - - - - nucleoporin 37 [Source:NCBI gene;Acc:418093]
92. FAM98A ENSGALG00000010428 9585 0.951 - - - - 0.951 - - - - - family with sequence similarity 98 member A [Source:NCBI gene;Acc:421458]
93. SPG21 ENSGALG00000007262 8050 0.95 - - - - 0.950 - - - - - SPG21, maspardin [Source:NCBI gene;Acc:415526]
94. TNPO3 ENSGALG00000039420 5178 0.95 - - - - 0.950 - - - - - transportin 3 [Source:HGNC Symbol;Acc:HGNC:17103]
95. PHKA1 ENSGALG00000004801 2510 0.95 - - - - 0.950 - - - - - phosphorylase kinase regulatory subunit alpha 1 [Source:HGNC Symbol;Acc:HGNC:8925]
96. RAB21 ENSGALG00000010183 7718 0.95 - - - - 0.950 - - - - - RAB21, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:18263]
97. CDC5L ENSGALG00000016704 22893 0.949 - - - - 0.949 - - - - - cell division cycle 5 like [Source:HGNC Symbol;Acc:HGNC:1743]
98. EIF3H ENSGALG00000040522 39919 0.949 - - - - 0.949 - - - - - eukaryotic translation initiation factor 3 subunit H [Source:NCBI gene;Acc:420288]
99. ESRP2 ENSGALG00000003374 4436 0.949 - - - - 0.949 - - - - - epithelial splicing regulatory protein 2 [Source:NCBI gene;Acc:415710]
100. MRPS17 ENSGALG00000002379 30243 0.949 - - - - - - - 0.949 - - mitochondrial ribosomal protein S17 [Source:NCBI gene;Acc:417538]

There are 124 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA