Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for SMARCE1

Gene Name Gene ID Reads Annotation
SMARCE1 ENSGALG00000003882 49063 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 [Source:NCBI gene;Acc:420047]











Genes with expression patterns similar to SMARCE1

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. SMARCE1 ENSGALG00000003882 49063 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 [Source:NCBI gene;Acc:420047]
2. USPL1 ENSGALG00000017079 6263 1.703 - - - - - - 0.970 0.733 - - ubiquitin specific peptidase like 1 [Source:NCBI gene;Acc:395436]
3. LRPPRC ENSGALG00000009967 17091 0.989 - - - - - - 0.989 - - - leucine rich pentatricopeptide repeat containing [Source:HGNC Symbol;Acc:HGNC:15714]
4. RAP1B ENSGALG00000009927 26562 0.988 - - - - - - 0.988 - - - RAP1B, member of RAS oncogene family [Source:NCBI gene;Acc:417840]
5. DHFR ENSGALG00000026757 18478 0.984 - - - - - - 0.984 - - - dihydrofolate reductase [Source:NCBI gene;Acc:427317]
6. UBE2L3 ENSGALG00000036739 21401 0.983 - - - - - - 0.983 - - - ubiquitin conjugating enzyme E2 L3 [Source:NCBI gene;Acc:416769]
7. IFT20 ENSGALG00000005707 23973 0.983 - - - - - - 0.983 - - - intraflagellar transport 20 [Source:HGNC Symbol;Acc:HGNC:30989]
8. SLC9A3R1 ENSGALG00000007650 13053 0.982 - - - - - - 0.982 - - - SLC9A3 regulator 1 [Source:NCBI gene;Acc:422108]
9. RAB12 ENSGALG00000033608 14160 0.981 - - - - - - 0.981 - - - RAB12, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:31332]
10. TMEM18 ENSGALG00000028744 11779 0.981 - - - - - - 0.981 - - - transmembrane protein 18 [Source:NCBI gene;Acc:421911]
11. CNOT6 ENSGALG00000034316 10496 0.98 - - - - - - 0.980 - - - CCR4-NOT transcription complex subunit 6 [Source:HGNC Symbol;Acc:HGNC:14099]
12. HDAC8 ENSGALG00000004825 12066 0.979 - - - - - - 0.979 - - - histone deacetylase 8, transcript variant X2
13. MATR3 ENSGALG00000002478 12793 0.978 - - - - - - 0.978 - - - matrin 3 [Source:NCBI gene;Acc:373948]
14. CCNYL1 ENSGALG00000008485 11958 0.977 - - - - - - 0.977 - - - cyclin Y like 1
15. CTBPL ENSGALG00000007642 14238 0.976 - - - - - - 0.976 - - - C-terminal binding protein-like [Source:NCBI gene;Acc:416354]
16. DAPK3 ENSGALG00000037733 6215 0.976 - - - - - - 0.976 - - - death-associated protein kinase 3, transcript variant X2
17. HNRNPM ENSGALG00000000377 40684 0.975 - - - - - - 0.975 - - - heterogeneous nuclear ribonucleoprotein M [Source:NCBI gene;Acc:420054]
18. MCM3 ENSGALG00000016676 16934 0.974 - - - - - - 0.974 - - - minichromosome maintenance complex component 3 [Source:NCBI gene;Acc:422043]
19. GPC1 ENSGALG00000040316 13364 0.974 - - - - - - 0.974 - - - glypican 1 [Source:NCBI gene;Acc:424770]
20. ARHGAP32 ENSGALG00000043511 7916 0.974 - - - - - - 0.974 - - - Rho GTPase activating protein 32 [Source:HGNC Symbol;Acc:HGNC:17399]
21. CXCL12 ENSGALG00000041346 4128 0.972 - - - - - - 0.972 - - - C-X-C motif chemokine ligand 12 [Source:NCBI gene;Acc:395180]
22. DNAJC7 ENSGALG00000042796 14597 0.972 - - - - - - 0.972 - - - DnaJ heat shock protein family (Hsp40) member C7 [Source:NCBI gene;Acc:428312]
23. CDCA4 ENSGALG00000011692 10381 0.972 - - - - - - 0.972 - - - cell division cycle associated 4 [Source:NCBI gene;Acc:423500]
24. FAM192A ENSGALG00000021473 10213 0.971 - - - - - - 0.971 - - - family with sequence similarity 192 member A [Source:NCBI gene;Acc:415647]
25. FAT1 ENSGALG00000013579 6030 0.971 - - - - - - 0.971 - - - FAT atypical cadherin 1 [Source:HGNC Symbol;Acc:HGNC:3595]
26. ZEB1 ENSGALG00000007260 9277 0.971 - - - - - - 0.971 - - - zinc finger E-box binding homeobox 1 [Source:NCBI gene;Acc:396029]
27. EIF3D ENSGALG00000012529 40887 0.971 - - - - - - 0.971 - - - eukaryotic translation initiation factor 3 subunit D [Source:HGNC Symbol;Acc:HGNC:3278]
28. HNRNPH3 ENSGALG00000003947 28724 0.97 - - - - - - 0.970 - - - heterogeneous nuclear ribonucleoprotein H3 [Source:NCBI gene;Acc:423686]
29. WDHD1 ENSGALG00000012199 3570 0.97 - - - - - - 0.970 - - - WD repeat and HMG-box DNA binding protein 1 [Source:HGNC Symbol;Acc:HGNC:23170]
30. EFTUD2 ENSGALG00000000988 17913 0.97 - - - - - - 0.970 - - - elongation factor Tu GTP binding domain containing 2 [Source:NCBI gene;Acc:428281]
31. C9orf64 ENSGALG00000012589 6097 0.97 - - - - - - 0.970 - - - chromosome 9 open reading frame 64 [Source:HGNC Symbol;Acc:HGNC:28144]
32. ZNF644 ENSGALG00000034253 28348 0.97 - - - - - - 0.970 - - - zinc finger protein 644 [Source:HGNC Symbol;Acc:HGNC:29222]
33. Sep-06 Sep-06 5961 0.97 - - - - - - 0.970 - - -
34. EIF1B ENSGALG00000038646 9508 0.97 - - - - - - 0.970 - - - eukaryotic translation initiation factor 1B [Source:HGNC Symbol;Acc:HGNC:30792]
35. CORO1C ENSGALG00000004901 7055 0.969 - - - - - - 0.969 - - - coronin 1C [Source:NCBI gene;Acc:416893]
36. RNF141 ENSGALG00000029586 4962 0.967 - - - - - - 0.967 - - - ring finger protein 141 [Source:NCBI gene;Acc:423039]
37. PPIG ENSGALG00000009839 24114 0.965 - - - - - - 0.965 - - - peptidylprolyl isomerase G [Source:HGNC Symbol;Acc:HGNC:14650]
38. VSX1 ENSGALG00000037576 1517 0.964 - - - - - - 0.964 - - - visual system homeobox 1 [Source:NCBI gene;Acc:395537]
39. MCM6 ENSGALG00000012348 12523 0.964 - - - - - - 0.964 - - - minichromosome maintenance complex component 6 [Source:NCBI gene;Acc:424295]
40. LRPAP1 ENSGALG00000015612 3526 0.963 - - - - - - 0.963 - - - LDL receptor related protein associated protein 1 [Source:NCBI gene;Acc:395936]
41. INTS4 ENSGALG00000000091 5965 0.962 - - - - - - 0.962 - - - integrator complex subunit 4 [Source:HGNC Symbol;Acc:HGNC:25048]
42. C15H12ORF49 C15H12ORF49 13250 0.96 - - - - - - 0.960 - - -
43. PDLIM4 ENSGALG00000039872 7823 0.951 - - - - - - 0.951 - - - PDZ and LIM domain 4 [Source:NCBI gene;Acc:395643]
44. RPL3 ENSGALG00000012172 118287 0.883 - - - - - - 0.883 - - - ribosomal protein L3 [Source:NCBI gene;Acc:418016]
45. LUM ENSGALG00000011271 44020 0.862 - - - - - - 0.862 - - - lumican [Source:NCBI gene;Acc:417891]
46. IKBKAP 4508 0.852 - - - - - - - 0.852 - - inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase complex-associated protein
47. SUB1 ENSGALG00000003248 56412 0.847 - - - - - - 0.847 - - - SUB1 homolog, transcriptional regulator [Source:NCBI gene;Acc:427425]
48. MCM5 ENSGALG00000012546 18254 0.835 - - - - 0.835 - - - - - minichromosome maintenance complex component 5 [Source:NCBI gene;Acc:418058]
49. NTAN1 ENSGALG00000040905 7713 0.819 - - - - - - - 0.819 - - N-terminal asparagine amidase [Source:HGNC Symbol;Acc:HGNC:29909]
50. SNRPD1 ENSGALG00000041334 219195 0.81 - - - - 0.810 - - - - - small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
51. SOD1 ENSGALG00000015844 35836 0.786 - - - - 0.786 - - - - - superoxide dismutase 1, soluble [Source:NCBI gene;Acc:395938]
52. GATA6 ENSGALG00000014976 3256 0.772 - - 0.772 - - - - - - - GATA binding protein 6 [Source:NCBI gene;Acc:396390]
53. DYL1 ENSGALG00000007153 94287 0.772 - - - - 0.772 - - - - - dynein light chain 1 cytoplasmic [Source:NCBI gene;Acc:427708]
54. DGCR2 ENSGALG00000005891 8405 0.76 - - - - 0.760 - - - - - DiGeorge syndrome critical region gene 2 [Source:HGNC Symbol;Acc:HGNC:2845]
55. RBX1 ENSGALG00000011993 26090 0.758 - - - - 0.758 - - - - - ring-box 1 [Source:NCBI gene;Acc:418001]
56. NDUFA1 ENSGALG00000008613 20410 0.758 - - - - 0.758 - - - - - NADH:ubiquinone oxidoreductase subunit A1 [Source:NCBI gene;Acc:772150]
57. MOSPD1 ENSGALG00000006132 8503 0.757 - - - - 0.757 - - - - - motile sperm domain containing 1 [Source:HGNC Symbol;Acc:HGNC:25235]
58. ATP5G3 168626 0.757 - - - - - - 0.757 - - - ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
59. OGT ENSGALG00000005425 31074 0.751 - - - - - - - - - 0.751 O-linked N-acetylglucosamine (GlcNAc) transferase [Source:HGNC Symbol;Acc:HGNC:8127]
60. EIF4A3 ENSGALG00000008530 53964 0.749 - - - - 0.749 - - - - - eukaryotic translation initiation factor 4A3 [Source:NCBI gene;Acc:416704]
61. SLC35E2B 7675 0.749 - - - - 0.749 - - - - - solute carrier family 35 member E2B
62. AKR1B10L3 ENSGALG00000019284 5869 0.743 - - - - 0.743 - - - - - aldo-keto reductase family 1 member B10-like 3
63. DAP3 ENSGALG00000019796 13278 0.743 - - - - - - - 0.743 - - death associated protein 3 [Source:HGNC Symbol;Acc:HGNC:2673]
64. TYMS ENSGALG00000014897 20484 0.741 - - - - 0.741 - - - - - thymidylate synthetase [Source:HGNC Symbol;Acc:HGNC:12441]
65. HIAT1 HIAT1 447 0.74 - - - - - - - 0.740 - -
66. MTFR1L ENSGALG00000000998 3457 0.74 - - - - - - - 0.740 - - mitochondrial fission regulator 1 like [Source:HGNC Symbol;Acc:HGNC:28836]
67. ENSGALG00000026592 ENSGALG00000026592 4331 0.739 - - - - - - - 0.739 - -
68. TCF15 ENSGALG00000026276 3646 0.739 - - - - - - - 0.739 - - transcription factor 15 [Source:NCBI gene;Acc:395788]
69. ECHDC1 ENSGALG00000014828 958 0.739 - - - - - - - 0.739 - - ethylmalonyl-CoA decarboxylase 1 [Source:NCBI gene;Acc:769021]
70. APCDD1 ENSGALG00000000894 1482 0.739 - - - - - - - 0.739 - - APC down-regulated 1 [Source:NCBI gene;Acc:426765]
71. ARHGAP17 ENSGALG00000041213 4288 0.738 - - 0.738 - - - - - - - Rho GTPase activating protein 17 [Source:HGNC Symbol;Acc:HGNC:18239]
72. CHST10 ENSGALG00000016769 2472 0.738 - - - - - - - 0.738 - - carbohydrate sulfotransferase 10 [Source:NCBI gene;Acc:395206]
73. SNRNP25 ENSGALG00000026559 2097 0.737 - - - - - - - 0.737 - - small nuclear ribonucleoprotein U11/U12 subunit 25 [Source:HGNC Symbol;Acc:HGNC:14161]
74. ORAI2 ENSGALG00000001837 2528 0.737 - - - - - - - 0.737 - - ORAI calcium release-activated calcium modulator 2 [Source:NCBI gene;Acc:417509]
75. SLC25A33 ENSGALG00000002519 4173 0.736 - - - - - - - 0.736 - - solute carrier family 25 member 33 [Source:HGNC Symbol;Acc:HGNC:29681]
76. CSRNP1 ENSGALG00000027905 3141 0.735 - - - - - - - 0.735 - - cysteine and serine rich nuclear protein 1 [Source:HGNC Symbol;Acc:HGNC:14300]
77. WDR70 ENSGALG00000003708 5835 0.735 - - - - - - - 0.735 - - WD repeat domain 70 [Source:NCBI gene;Acc:427444]
78. CHMP7 ENSGALG00000000409 8967 0.735 - - - - - - - 0.735 - - charged multivesicular body protein 7 [Source:NCBI gene;Acc:419535]
79. PPP1CC ENSGALG00000004571 14748 0.735 - - - - 0.735 - - - - - protein phosphatase 1 catalytic subunit gamma [Source:NCBI gene;Acc:416872]
80. CMIP ENSGALG00000038494 5016 0.734 - - - - - - - 0.734 - - c-Maf inducing protein [Source:HGNC Symbol;Acc:HGNC:24319]
81. GSTK1 ENSGALG00000014708 4687 0.732 - - - - - - - 0.732 - - glutathione S-transferase kappa 1 [Source:NCBI gene;Acc:418302]
82. SEC23A_1 ENSGALG00000010150 14745 0.731 - - - - - - - 0.731 - - Sec23 homolog A, coat complex II component [Source:HGNC Symbol;Acc:HGNC:10701]
83. GTF2E1 ENSGALG00000042320 7712 0.731 - - - - 0.731 - - - - - general transcription factor IIE subunit 1 [Source:HGNC Symbol;Acc:HGNC:4650]
84. WASF1 ENSGALG00000015066 5628 0.731 - - - - 0.731 - - - - - WAS protein family member 1 [Source:HGNC Symbol;Acc:HGNC:12732]
85. TRAPPC8 ENSGALG00000015157 4308 0.731 - - - - - - - 0.731 - - trafficking protein particle complex 8, transcript variant X5
86. UQCRC1 ENSGALG00000005789 23201 0.73 - - - - 0.730 - - - - - ubiquinol-cytochrome c reductase core protein 1 [Source:HGNC Symbol;Acc:HGNC:12585]
87. DCN ENSGALG00000011274 4166 0.73 - - - - - - - 0.730 - - decorin [Source:NCBI gene;Acc:417892]
88. DPP9 ENSGALG00000004200 4515 0.728 - - - - - - - 0.728 - - dipeptidyl peptidase 9 [Source:HGNC Symbol;Acc:HGNC:18648]
89. RFC5 ENSGALG00000026517 26113 0.728 - - - - 0.728 - - - - - replication factor C subunit 5 [Source:HGNC Symbol;Acc:HGNC:9973]
90. MRPS22 ENSGALG00000005367 8307 0.728 - - - - 0.728 - - - - - mitochondrial ribosomal protein S22 [Source:HGNC Symbol;Acc:HGNC:14508]
91. MRPL35 ENSGALG00000022950 26070 0.727 - - - - 0.727 - - - - - mitochondrial ribosomal protein L35 [Source:HGNC Symbol;Acc:HGNC:14489]
92. TMEM128 ENSGALG00000014992 6567 0.727 - - - - - - - 0.727 - - transmembrane protein 128 [Source:NCBI gene;Acc:422845]
93. SOX11 ENSGALG00000016397 12144 0.726 - - - - - - - - - 0.726 SRY-box 11 [Source:NCBI gene;Acc:396104]
94. ALYREF ENSGALG00000007237 48479 0.726 - - - - 0.726 - - - - - Aly/REF export factor [Source:NCBI gene;Acc:769169]
95. CCDC101 CCDC101 9111 0.726 - - - - - - - 0.726 - -
96. DR1 ENSGALG00000005858 8016 0.725 - - - - - - - 0.725 - - down-regulator of transcription 1 [Source:NCBI gene;Acc:424496]
97. NCKAP1 ENSGALG00000002750 22749 0.725 - - - - - - - 0.725 - - NCK associated protein 1 [Source:HGNC Symbol;Acc:HGNC:7666]
98. PAFAH1B1 ENSGALG00000005834 23532 0.724 - - - - 0.724 - - - - - platelet activating factor acetylhydrolase 1b regulatory subunit 1 [Source:NCBI gene;Acc:374224]
99. CNI CNI 18453 0.723 - - - - 0.723 - - - - -
100. MRPS33 ENSGALG00000028879 17966 0.72 - - - - 0.720 - - - - - mitochondrial ribosomal protein S33 [Source:NCBI gene;Acc:418119]

There are 20 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA