Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for SMARCC1

Gene Name Gene ID Reads Annotation
SMARCC1 ENSGALG00000032642 4842 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1 [Source:HGNC Symbol;Acc:HGNC:11104]











Genes with expression patterns similar to SMARCC1

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. SMARCC1 ENSGALG00000032642 4842 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1 [Source:HGNC Symbol;Acc:HGNC:11104]
2. ANKRD11 ENSGALG00000006222 12327 2.383 0.772 0.714 - - - - - - - 0.897 ankyrin repeat domain 11, transcript variant X2
3. ITGA9 ENSGALG00000029378 415 1.95 - - - - - - - 0.991 - 0.959 integrin subunit alpha 9 [Source:NCBI gene;Acc:420757]
4. SMC6 ENSGALG00000016467 3321 1.905 - - - - - - - 0.966 - 0.939 Gallus gallus structural maintenance of chromosomes 6 (SMC6), mRNA. [Source:RefSeq mRNA;Acc:NM_001321614]
5. MTERFD1 MTERFD1 3640 1.888 - - - - - - - 0.964 - 0.924
6. KHDRBS1 ENSGALG00000003272 4249 1.884 - - - - - - - 0.971 - 0.913 KH RNA binding domain containing, signal transduction associated 1 [Source:NCBI gene;Acc:374071]
7. CAMSAP2 ENSGALG00000002145 6109 1.847 - - - - - - - 0.935 - 0.912 calmodulin regulated spectrin associated protein family member 2 [Source:HGNC Symbol;Acc:HGNC:29188]
8. CKAP2 ENSGALG00000017025 25020 1.847 - - - - - - - 0.918 - 0.929 cytoskeleton associated protein 2 [Source:NCBI gene;Acc:418882]
9. TXNDC5 ENSGALG00000012784 4678 1.819 - - - - - - - 0.958 - 0.861 thioredoxin domain containing 5 [Source:NCBI gene;Acc:420867]
10. ASB9 ENSGALG00000016563 2780 1.804 - - - - - - - 0.883 - 0.921 ankyrin repeat and SOCS box containing 9 [Source:NCBI gene;Acc:418625]
11. MED24 ENSGALG00000013506 5403 1.789 - - - - - - - 0.890 - 0.899 mediator complex subunit 24 [Source:NCBI gene;Acc:426134]
12. BTG1L ENSGALG00000004676 2293 1.728 - - - - - - - 0.987 - 0.741 protein BTG1-like
13. KDM4A ENSGALG00000010074 7219 1.706 - - - - - - - 0.971 - 0.735 lysine demethylase 4A
14. REXO1 ENSGALG00000001043 3179 1.69 0.702 - - - - - - 0.988 - - RNA exonuclease 1 homolog [Source:HGNC Symbol;Acc:HGNC:24616]
15. TBL1XR1 ENSGALG00000039182 16983 1.685 - - - - - - - 0.940 - 0.745 transducin beta like 1 X-linked receptor 1 [Source:NCBI gene;Acc:426284]
16. NDUFAF1 ENSGALG00000008587 14779 1.672 - - - - - - - 0.907 - 0.765 NADH:ubiquinone oxidoreductase complex assembly factor 1 [Source:HGNC Symbol;Acc:HGNC:18828]
17. SMDT1 ENSGALG00000011897 9360 1.671 - - - - - - - 0.890 - 0.781 single-pass membrane protein with aspartate rich tail 1 [Source:HGNC Symbol;Acc:HGNC:25055]
18. EFTUD2 ENSGALG00000000988 17913 1.666 - - - - - - - 0.851 - 0.815 elongation factor Tu GTP binding domain containing 2 [Source:NCBI gene;Acc:428281]
19. TCERG1 ENSGALG00000007528 6346 1.655 0.756 - - - - - - - - 0.899 transcription elongation regulator 1 [Source:HGNC Symbol;Acc:HGNC:15630]
20. SPG21 ENSGALG00000007262 8050 1.625 - - - - - - - 0.802 - 0.823 SPG21, maspardin [Source:NCBI gene;Acc:415526]
21. ZNF326 ENSGALG00000006113 15141 1.609 - - - - - - - 0.828 - 0.781 zinc finger protein 326 [Source:NCBI gene;Acc:424512]
22. NAP1L1 ENSGALG00000010238 14506 1.562 0.780 - - - - - - - - 0.782 nucleosome assembly protein 1 like 1 [Source:HGNC Symbol;Acc:HGNC:7637]
23. HNRNPD ENSGALG00000011184 10686 1.561 - - - - - - - 0.763 - 0.798 heterogeneous nuclear ribonucleoprotein D [Source:NCBI gene;Acc:422602]
24. RDX ENSGALG00000017153 6734 1.551 0.755 - - - - - - - - 0.796 radixin [Source:NCBI gene;Acc:395511]
25. RALGAPB ENSGALG00000001420 5112 1.528 - - - - - - - 0.785 - 0.743 Ral GTPase activating protein non-catalytic beta subunit [Source:NCBI gene;Acc:419128]
26. PABPC1 ENSGALG00000030280 23934 1.488 0.788 0.700 - - - - - - - - poly(A) binding protein cytoplasmic 1 [Source:NCBI gene;Acc:430997]
27. ATRX ENSGALG00000007843 34172 1.427 0.720 0.707 - - - - - - - - ATRX, chromatin remodeler [Source:HGNC Symbol;Acc:HGNC:886]
28. INOS INOS 313 0.992 - - - - - - - 0.992 - -
29. GTDC1 ENSGALG00000012424 1446 0.992 - - - - - - - 0.992 - - glycosyltransferase like domain containing 1 [Source:NCBI gene;Acc:424304]
30. gga-mir-1772 ENSGALG00000025300 2892 0.992 - - - - - - - 0.992 - - gga-mir-1772 [Source:miRBase;Acc:MI0007515]
31. H3-I H3-I 1498 0.992 - - - - - - - 0.992 - -
32. RGS17 ENSGALG00000026034 707 0.991 - - - - - - - 0.991 - - regulator of G protein signaling 17 [Source:NCBI gene;Acc:395645]
33. MYH15 ENSGALG00000015358 6304 0.991 - - - - - - - 0.991 - - myosin, heavy chain 15 [Source:NCBI gene;Acc:395534]
34. ADIPOR1 ENSGALG00000000094 1862 0.991 - - - - - - - 0.991 - - adiponectin receptor 1 [Source:NCBI gene;Acc:421148]
35. C5orf24 ENSGALG00000006371 1573 0.991 - - - - - - - 0.991 - - chromosome 5 open reading frame 24 [Source:HGNC Symbol;Acc:HGNC:26746]
36. ARRDC4 ENSGALG00000007012 1039 0.991 - - - - - - - 0.991 - - arrestin domain containing 4 [Source:HGNC Symbol;Acc:HGNC:28087]
37. HDGFL2 ENSGALG00000027068 1300 0.991 - - - - - - - 0.991 - - HDGF like 2 [Source:NCBI gene;Acc:772302]
38. STX18 ENSGALG00000015012 1489 0.991 - - - - - - - 0.991 - - syntaxin 18 [Source:NCBI gene;Acc:422848]
39. TRPC6 ENSGALG00000029416 281 0.991 - - - - - - - 0.991 - - transient receptor potential cation channel subfamily C member 6 [Source:HGNC Symbol;Acc:HGNC:12338]
40. RP9 ENSGALG00000035453 1186 0.991 - - - - - - - 0.991 - - retinitis pigmentosa 9 (autosomal dominant)
41. C7orf25 ENSGALG00000040161 694 0.991 - - - - - - - 0.991 - - chromosome 7 open reading frame 25 [Source:HGNC Symbol;Acc:HGNC:21703]
42. PHLPP1 ENSGALG00000012888 398 0.99 - - - - - - - 0.990 - - PH domain and leucine rich repeat protein phosphatase 1 [Source:HGNC Symbol;Acc:HGNC:20610]
43. TFEB ENSGALG00000039878 881 0.99 - - - - - - - 0.990 - - transcription factor EB [Source:NCBI gene;Acc:419922]
44. RGS9 ENSGALG00000029610 112 0.99 - - - - - - - 0.990 - - regulator of G protein signaling 9 [Source:HGNC Symbol;Acc:HGNC:10004]
45. IRX1 ENSGALG00000030991 1474 0.989 - - - - - - - 0.989 - - iroquois homeobox 1 [Source:NCBI gene;Acc:374185]
46. FIGN ENSGALG00000011069 311 0.989 - - - - - - - 0.989 - - fidgetin, microtubule severing factor [Source:HGNC Symbol;Acc:HGNC:13285]
47. PKP4 ENSGALG00000012561 3087 0.989 - - - - - - - 0.989 - - plakophilin 4 [Source:NCBI gene;Acc:424328]
48. CC2D2A ENSGALG00000014514 1180 0.989 - - - - - - - 0.989 - - coiled-coil and C2 domain containing 2A [Source:HGNC Symbol;Acc:HGNC:29253]
49. ALG9 ENSGALG00000021174 745 0.989 - - - - - - - 0.989 - - ALG9, alpha-1,2-mannosyltransferase, transcript variant X5
50. CARS2 ENSGALG00000016847 3814 0.989 - - - - - - - 0.989 - - cysteinyl-tRNA synthetase 2, mitochondrial [Source:HGNC Symbol;Acc:HGNC:25695]
51. DEPDC7 ENSGALG00000011681 1181 0.989 - - - - - - - 0.989 - - DEP domain containing 7 [Source:NCBI gene;Acc:421593]
52. PNISR ENSGALG00000015483 7711 0.989 - - - - - - - 0.989 - - PNN interacting serine and arginine rich protein [Source:NCBI gene;Acc:421796]
53. ZC3H3 ENSGALG00000043265 1638 0.988 - - - - - - - 0.988 - - zinc finger CCCH-type containing 3 [Source:NCBI gene;Acc:430349]
54. APOOL ENSGALG00000006978 1953 0.988 - - - - - - - 0.988 - - apolipoprotein O like [Source:NCBI gene;Acc:422271]
55. TMEM57 ENSGALG00000001067 3367 0.988 - - - - - - - 0.988 - - transmembrane protein 57 [Source:NCBI gene;Acc:419590]
56. DNAJA1 ENSGALG00000023066 3820 0.988 - - - - - - - 0.988 - - DnaJ heat shock protein family (Hsp40) member A1 [Source:NCBI gene;Acc:427376]
57. AMMECR1L ENSGALG00000026728 2134 0.987 - - - - - - - 0.987 - - AMMECR1 like [Source:HGNC Symbol;Acc:HGNC:28658]
58. NEMF ENSGALG00000012263 2250 0.987 - - - - - - - 0.987 - - nuclear export mediator factor [Source:NCBI gene;Acc:428926]
59. TRMT44 ENSGALG00000015594 1490 0.987 - - - - - - - 0.987 - - tRNA methyltransferase 44 homolog [Source:HGNC Symbol;Acc:HGNC:26653]
60. MTMR9 ENSGALG00000016649 2055 0.987 - - - - - - - 0.987 - - myotubularin related protein 9 [Source:NCBI gene;Acc:422033]
61. NSRP1 ENSGALG00000004186 1683 0.987 - - - - - - - 0.987 - - nuclear speckle splicing regulatory protein 1 [Source:HGNC Symbol;Acc:HGNC:25305]
62. NGEF ENSGALG00000036327 1048 0.986 - - - - - - - 0.986 - - neuronal guanine nucleotide exchange factor [Source:NCBI gene;Acc:424744]
63. TMEM59 ENSGALG00000010746 4669 0.986 - - - - - - - 0.986 - - transmembrane protein 59 [Source:NCBI gene;Acc:424656]
64. ATP8B4 ENSGALG00000002326 456 0.986 - - - - - - - 0.986 - - ATPase phospholipid transporting 8B4 (putative), transcript variant X4
65. ABCA3 ENSGALG00000037837 1606 0.986 - - - - - - - 0.986 - - ATP binding cassette subfamily A member 3 [Source:HGNC Symbol;Acc:HGNC:33]
66. REV3L ENSGALG00000015033 1917 0.985 - - - - - - - 0.985 - - REV3 like, DNA directed polymerase zeta catalytic subunit [Source:HGNC Symbol;Acc:HGNC:9968]
67. PYCR1 ENSGALG00000007300 7987 0.985 - - - - - - - 0.985 - - pyrroline-5-carboxylate reductase 1 [Source:NCBI gene;Acc:769203]
68. CHAF1A ENSGALG00000001126 6506 0.985 - - - - - - - 0.985 - - chromatin assembly factor 1 subunit A [Source:NCBI gene;Acc:770217]
69. DCTN5 ENSGALG00000006088 3113 0.985 - - - - - - - 0.985 - - dynactin subunit 5 [Source:NCBI gene;Acc:416574]
70. METTL22 ENSGALG00000033603 696 0.983 - - - - - - - 0.983 - - methyltransferase like 22 [Source:NCBI gene;Acc:425865]
71. GOLGB1 ENSGALG00000041494 2376 0.982 - - - - - - - 0.982 - - golgin B1 [Source:HGNC Symbol;Acc:HGNC:4429]
72. FGF18 ENSGALG00000002203 551 0.982 - - - - - - - 0.982 - - fibroblast growth factor 18 [Source:NCBI gene;Acc:395453]
73. UCK2 ENSGALG00000003510 2512 0.981 - - - - - - - 0.981 - - uridine-cytidine kinase 2 [Source:NCBI gene;Acc:424406]
74. NR2F2 ENSGALG00000007000 4911 0.98 - - - - - - - 0.980 - - nuclear receptor subfamily 2 group F member 2 [Source:NCBI gene;Acc:386585]
75. ENSGALG00000014190 ENSGALG00000014190 5735 0.98 - - - - - - - 0.980 - -
76. NET1 ENSGALG00000008437 9850 0.979 - - - - - - - 0.979 - - neuroepithelial cell transforming 1 [Source:NCBI gene;Acc:416693]
77. BRCC3 ENSGALG00000005383 4844 0.979 - - - - - - - 0.979 - - BRCA1/BRCA2-containing complex subunit 3 [Source:HGNC Symbol;Acc:HGNC:24185]
78. PEO1 PEO1 6747 0.976 - - - - - - - 0.976 - -
79. TRIM24 ENSGALG00000012823 2725 0.975 - - - - - - - 0.975 - - tripartite motif containing 24 [Source:HGNC Symbol;Acc:HGNC:11812]
80. DUSP14 ENSGALG00000027641 3662 0.975 - - - - - - - 0.975 - - dual specificity phosphatase 14 [Source:HGNC Symbol;Acc:HGNC:17007]
81. SRP72 ENSGALG00000011403 13666 0.974 - - - - - - - 0.974 - - signal recognition particle 72 [Source:NCBI gene;Acc:422626]
82. RNF214 ENSGALG00000036993 3729 0.973 - - - - - - - 0.973 - - ring finger protein 214 [Source:HGNC Symbol;Acc:HGNC:25335]
83. gga-mir-1306 ENSGALG00000025271 1231 0.973 - - - - - - - 0.973 - - gga-mir-1306 [Source:miRBase;Acc:MI0007057]
84. SLC25A1 ENSGALG00000041760 4744 0.972 - - - - - - - 0.972 - - solute carrier family 25 member 1, transcript variant X2
85. ARHGEF4 ENSGALG00000002193 558 0.972 - - - - - - - 0.972 - - Rho guanine nucleotide exchange factor 4 [Source:HGNC Symbol;Acc:HGNC:684]
86. CNTRL ENSGALG00000001513 1773 0.972 - - - - - - - - - 0.972 centriolin [Source:NCBI gene;Acc:417121]
87. TCEA1 ENSGALG00000015274 2706 0.97 - - - - - - - 0.970 - - transcription elongation factor A1 [Source:NCBI gene;Acc:421119]
88. ACSL1 ENSGALG00000010628 2560 0.97 - - - - - - - 0.970 - - acyl-CoA synthetase long chain family member 1 [Source:NCBI gene;Acc:422547]
89. CDH1-A CDH1-A 343 0.97 - - - - - - - - - 0.970
90. EFHD1 ENSGALG00000001428 2831 0.969 - - - - - - - 0.969 - - EF-hand domain family member D1 [Source:NCBI gene;Acc:424741]
91. USP32 ENSGALG00000005350 1686 0.969 - - - - - - - 0.969 - - ubiquitin specific peptidase 32, transcript variant X2
92. NUP210L 370 0.969 - - - - - - - 0.969 - - nucleoporin 210 like
93. SMIM12 ENSGALG00000030261 5860 0.969 - - - - - - - 0.969 - - small integral membrane protein 12 [Source:NCBI gene;Acc:100858028]
94. MAST2 ENSGALG00000010313 2975 0.969 - - - - - - - 0.969 - - microtubule associated serine/threonine kinase 2 [Source:HGNC Symbol;Acc:HGNC:19035]
95. LIG3 ENSGALG00000002288 7198 0.969 - - - - - - - 0.969 - - DNA ligase 3 [Source:NCBI gene;Acc:417530]
96. DMB2 ENSGALG00000038393 1257 0.968 - - - - - - - 0.968 - - major histocompatibility complex, class II, DM beta 2 [Source:NCBI gene;Acc:417051]
97. BRD1 ENSGALG00000029379 6047 0.968 - - - - - - - - - 0.968 bromodomain containing 1 [Source:NCBI gene;Acc:417731]
98. ZNF6 ZNF6 138 0.966 - - - - - - - - - 0.966
99. WHSC1 1712 0.966 - - - - - - - - - 0.966 Wolf-Hirschhorn syndrome candidate 1, transcript variant X14
100. EDEM1 ENSGALG00000008320 3117 0.966 - - - - - - - 0.966 - - ER degradation enhancing alpha-mannosidase like protein 1 [Source:NCBI gene;Acc:416110]

There are 614 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA