Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for SMARCB1

Gene Name Gene ID Reads Annotation
SMARCB1 ENSGALG00000005983 20548 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 [Source:NCBI gene;Acc:769489]











Genes with expression patterns similar to SMARCB1

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. SMARCB1 ENSGALG00000005983 20548 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 [Source:NCBI gene;Acc:769489]
2. TMF1 ENSGALG00000013408 3344 1.801 - - - - 0.917 - 0.884 - - - TATA element modulatory factor 1 [Source:HGNC Symbol;Acc:HGNC:11870]
3. RALGDS ENSGALG00000003412 4478 1.8 - - - - 0.914 - 0.886 - - - ral guanine nucleotide dissociation stimulator, transcript variant X10
4. SEPHS1 ENSGALG00000014575 10701 1.754 - - - - 0.869 - 0.885 - - - selenophosphate synthetase 1 [Source:NCBI gene;Acc:426612]
5. PSMG3 ENSGALG00000004203 11240 1.733 - - - - 0.911 - - 0.822 - - proteasome assembly chaperone 3 [Source:NCBI gene;Acc:416463]
6. UBE2D3 ENSGALG00000012311 39831 1.694 - - - - 0.846 - 0.848 - - - ubiquitin conjugating enzyme E2 D3 [Source:NCBI gene;Acc:422713]
7. PCMT1 ENSGALG00000012388 7778 1.641 - - - - - - 0.869 0.772 - - protein-L-isoaspartate (D-aspartate) O-methyltransferase [Source:NCBI gene;Acc:428607]
8. C9orf85 ENSGALG00000026001 4110 1.612 - - - - 0.912 - - 0.700 - - chromosome 9 open reading frame 85 [Source:HGNC Symbol;Acc:HGNC:28784]
9. HSPA5 ENSGALG00000001000 40342 1.55 - - 0.784 - 0.766 - - - - - heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) [Source:NCBI gene;Acc:396487]
10. MTX2 ENSGALG00000009264 17304 0.976 - - - - 0.976 - - - - - metaxin 2 [Source:HGNC Symbol;Acc:HGNC:7506]
11. TBC1D23 ENSGALG00000015273 4856 0.971 - - - - - - 0.971 - - - TBC1 domain family member 23 [Source:NCBI gene;Acc:418383]
12. YWHAE ENSGALG00000002661 37143 0.938 - - - - 0.938 - - - - - tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon [Source:NCBI gene;Acc:417554]
13. SAAL1 ENSGALG00000026111 8340 0.93 - - - - 0.930 - - - - - serum amyloid A like 1
14. PTK2B ENSGALG00000016564 406 0.925 - - - - 0.925 - - - - - protein tyrosine kinase 2 beta [Source:HGNC Symbol;Acc:HGNC:9612]
15. PREP2 PREP2 238 0.924 - - - - 0.924 - - - - -
16. SDCBP ENSGALG00000015436 1228 0.923 - - - - 0.923 - - - - - syndecan binding protein [Source:NCBI gene;Acc:421136]
17. SMG7 ENSGALG00000004667 707 0.923 - - - - 0.923 - - - - - SMG7, nonsense mediated mRNA decay factor [Source:HGNC Symbol;Acc:HGNC:16792]
18. LRP11 ENSGALG00000019987 3341 0.923 - - - - 0.923 - - - - - LDL receptor related protein 11 [Source:HGNC Symbol;Acc:HGNC:16936]
19. RAMP3 ENSGALG00000037246 1187 0.923 - - - - 0.923 - - - - - receptor activity modifying protein 3 [Source:NCBI gene;Acc:420786]
20. ETS1 ENSGALG00000001143 7284 0.922 - - - - 0.922 - - - - - v-ets avian erythroblastosis virus E26 oncogene homolog 1 [Source:NCBI gene;Acc:396235]
21. GTF2H1 ENSGALG00000042340 1553 0.922 - - - - 0.922 - - - - - general transcription factor IIH subunit 1 [Source:NCBI gene;Acc:423081]
22. ASAP2 ENSGALG00000016419 1393 0.922 - - - - 0.922 - - - - - ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 [Source:HGNC Symbol;Acc:HGNC:2721]
23. ANKRD9 ENSGALG00000011376 525 0.922 - - - - 0.922 - - - - - ankyrin repeat domain 9 [Source:HGNC Symbol;Acc:HGNC:20096]
24. MED8 ENSGALG00000009993 3095 0.922 - - - - 0.922 - - - - - mediator complex subunit 8 [Source:NCBI gene;Acc:424565]
25. PRDM4 ENSGALG00000012619 876 0.922 - - - - 0.922 - - - - - PR/SET domain 4 [Source:HGNC Symbol;Acc:HGNC:9348]
26. LZIC ENSGALG00000002616 9052 0.922 - - - - 0.922 - - - - - leucine zipper and CTNNBIP1 domain containing [Source:NCBI gene;Acc:419445]
27. ENSGALG00000006569 ENSGALG00000006569 2169 0.921 - - - - 0.921 - - - - -
28. YARS ENSGALG00000003563 11093 0.921 - - - - 0.921 - - - - - tyrosyl-tRNA synthetase [Source:NCBI gene;Acc:419666]
29. MOB3A ENSGALG00000031729 9690 0.921 - - - - 0.921 - - - - - MOB kinase activator 3A [Source:HGNC Symbol;Acc:HGNC:29802]
30. MRPL16 ENSGALG00000029419 8033 0.92 - - - - 0.920 - - - - - mitochondrial ribosomal protein L16 [Source:HGNC Symbol;Acc:HGNC:14476]
31. PITHD1 ENSGALG00000003986 11470 0.92 - - - - 0.920 - - - - - PITH domain containing 1 [Source:HGNC Symbol;Acc:HGNC:25022]
32. BRF1 ENSGALG00000011705 3406 0.92 - - - - 0.920 - - - - - BRF1, RNA polymerase III transcription initiation factor subunit [Source:HGNC Symbol;Acc:HGNC:11551]
33. NDUFV1 ENSGALG00000042809 6222 0.919 - - - - 0.919 - - - - - NADH:ubiquinone oxidoreductase core subunit V1 [Source:NCBI gene;Acc:430210]
34. PHTF1 ENSGALG00000001845 3276 0.919 - - - - 0.919 - - - - - putative homeodomain transcription factor 1 [Source:HGNC Symbol;Acc:HGNC:8939]
35. RAD54B ENSGALG00000043597 1699 0.919 - - - - 0.919 - - - - - RAD54 homolog B [Source:NCBI gene;Acc:395449]
36. SAP30 ENSGALG00000036252 2032 0.919 - - - - 0.919 - - - - - Sin3A associated protein 30 [Source:HGNC Symbol;Acc:HGNC:10532]
37. RBM6 ENSGALG00000035578 1690 0.919 - - - - 0.919 - - - - - RNA binding motif protein 6 [Source:NCBI gene;Acc:415931]
38. BAHD1 ENSGALG00000033675 1779 0.918 - - - - 0.918 - - - - - bromo adjacent homology domain containing 1 [Source:HGNC Symbol;Acc:HGNC:29153]
39. SYNE1 ENSGALG00000013505 2324 0.918 - - - - 0.918 - - - - - spectrin repeat containing, nuclear envelope 1, transcript variant X3
40. STARD3NL ENSGALG00000033038 4851 0.918 - - - - 0.918 - - - - - STARD3 N-terminal like [Source:HGNC Symbol;Acc:HGNC:19169]
41. FNDC5 ENSGALG00000003567 3328 0.916 - - - - 0.916 - - - - - Gallus gallus fibronectin type III domain containing 5 (FNDC5), mRNA. [Source:RefSeq mRNA;Acc:NM_001318986]
42. SNX14 ENSGALG00000015831 2554 0.916 - - - - 0.916 - - - - - sorting nexin 14 [Source:NCBI gene;Acc:421832]
43. RBM34 ENSGALG00000029915 5618 0.916 - - - - 0.916 - - - - - RNA binding motif protein 34 [Source:HGNC Symbol;Acc:HGNC:28965]
44. LOC426385 ENSGALG00000026301 2703 0.916 - - - - 0.916 - - - - - serine/threonine kinase 35-like, transcript variant X2
45. IARS2 ENSGALG00000009566 4599 0.915 - - - - 0.915 - - - - - isoleucyl-tRNA synthetase 2, mitochondrial [Source:NCBI gene;Acc:421346]
46. WDR92 ENSGALG00000008760 3934 0.914 - - - - 0.914 - - - - - WD repeat domain 92 [Source:NCBI gene;Acc:769534]
47. KIF11 ENSGALG00000030597 5528 0.914 - - - - 0.914 - - - - - kinesin family member 11 [Source:NCBI gene;Acc:423809]
48. ENSGALG00000028938 ENSGALG00000028938 18616 0.914 - - - - 0.914 - - - - -
49. EEF1D 153795 0.913 - - - - 0.913 - - - - - eukaryotic translation elongation factor 1 delta, transcript variant X13
50. DGKZ ENSGALG00000008380 5389 0.913 - - - - 0.913 - - - - - diacylglycerol kinase zeta [Source:NCBI gene;Acc:423197]
51. TSPO2 ENSGALG00000003212 5141 0.913 - - - - 0.913 - - - - - translocator protein 2 [Source:HGNC Symbol;Acc:HGNC:21256]
52. COQ5 ENSGALG00000007185 5614 0.913 - - - - 0.913 - - - - - coenzyme Q5, methyltransferase [Source:NCBI gene;Acc:416975]
53. MARC1 ENSGALG00000009453 5675 0.912 - - - - 0.912 - - - - - mitochondrial amidoxime reducing component 1 [Source:NCBI gene;Acc:428563]
54. HSF2 ENSGALG00000038420 5259 0.912 - - - - 0.912 - - - - - heat shock transcription factor 2 [Source:NCBI gene;Acc:421724]
55. EDNRA ENSGALG00000010013 2472 0.912 - - - - 0.912 - - - - - endothelin receptor type A [Source:NCBI gene;Acc:373908]
56. PBRM1 ENSGALG00000037455 6450 0.912 - - - - 0.912 - - - - - polybromo 1 [Source:NCBI gene;Acc:396074]
57. TIMMDC1 ENSGALG00000024480 9337 0.91 - - - - 0.910 - - - - - translocase of inner mitochondrial membrane domain containing 1 [Source:NCBI gene;Acc:418453]
58. DLL1 ENSGALG00000011182 1613 0.91 - - - - 0.910 - - - - - delta like canonical Notch ligand 1 [Source:NCBI gene;Acc:395820]
59. LMAN2 ENSGALG00000033232 11740 0.909 - - - - 0.909 - - - - - lectin, mannose binding 2 [Source:HGNC Symbol;Acc:HGNC:16986]
60. CCDC132 CCDC132 2632 0.908 - - - - 0.908 - - - - -
61. MED21 ENSGALG00000027435 5766 0.907 - - - - 0.907 - - - - - mediator complex subunit 21 [Source:HGNC Symbol;Acc:HGNC:11473]
62. ENSGALG00000027854 ENSGALG00000027854 5007 0.907 - - - - 0.907 - - - - -
63. WNK2 ENSGALG00000038850 4712 0.907 - - - - 0.907 - - - - - WNK lysine deficient protein kinase 2 [Source:HGNC Symbol;Acc:HGNC:14542]
64. CDKN1B ENSGALG00000022980 4606 0.905 - - - - 0.905 - - - - - cyclin dependent kinase inhibitor 1B [Source:NCBI gene;Acc:374106]
65. MEF2BNB MEF2BNB 5578 0.905 - - - - 0.905 - - - - -
66. CDH3 5050 0.905 - - - - 0.905 - - - - - cadherin 3
67. ATG16L1 ENSGALG00000001619 3562 0.902 - - - - 0.902 - - - - - autophagy related 16 like 1 [Source:HGNC Symbol;Acc:HGNC:21498]
68. UPF3B ENSGALG00000008618 12350 0.901 - - - - 0.901 - - - - - UPF3B, regulator of nonsense mediated mRNA decay [Source:HGNC Symbol;Acc:HGNC:20439]
69. SH3BGR ENSGALG00000016127 2561 0.901 - - - - 0.901 - - - - - SH3 domain binding glutamate rich protein
70. SFXN5 ENSGALG00000016094 2678 0.901 - - - - 0.901 - - - - - sideroflexin 5 [Source:HGNC Symbol;Acc:HGNC:16073]
71. SPRED1 ENSGALG00000028203 6520 0.899 - - - - 0.899 - - - - - sprouty related EVH1 domain containing 1 [Source:NCBI gene;Acc:423292]
72. UTP6 ENSGALG00000003260 4909 0.899 - - - - 0.899 - - - - - UTP6, small subunit processome component [Source:NCBI gene;Acc:417405]
73. FUNDC2 ENSGALG00000029585 9334 0.899 - - - - 0.899 - - - - - FUN14 domain containing 2 [Source:HGNC Symbol;Acc:HGNC:24925]
74. RHOT1 ENSGALG00000003397 5149 0.898 - - - - 0.898 - - - - - ras homolog family member T1 [Source:NCBI gene;Acc:417410]
75. ACAT2 ENSGALG00000011659 12825 0.897 - - - - 0.897 - - - - - acetyl-CoA acetyltransferase 2 [Source:NCBI gene;Acc:421587]
76. MYBL2 ENSGALG00000003503 15875 0.895 - - - - 0.895 - - - - - MYB proto-oncogene like 2 [Source:NCBI gene;Acc:396258]
77. CDCA7 ENSGALG00000040833 7484 0.894 - - - - 0.894 - - - - - cell division cycle associated 7 [Source:HGNC Symbol;Acc:HGNC:14628]
78. SLC30A4 ENSGALG00000005703 5696 0.894 - - - - 0.894 - - - - - solute carrier family 30 member 4 [Source:NCBI gene;Acc:415444]
79. LGMN ENSGALG00000010811 7401 0.893 - - - - 0.893 - - - - - legumain [Source:HGNC Symbol;Acc:HGNC:9472]
80. HARS ENSGALG00000035080 11602 0.893 - - - - 0.893 - - - - - histidyl-tRNA synthetase [Source:NCBI gene;Acc:416132]
81. NUP88 ENSGALG00000032280 9847 0.891 - - - - 0.891 - - - - - nucleoporin 88 [Source:HGNC Symbol;Acc:HGNC:8067]
82. SLMO2 SLMO2 9207 0.89 - - - - 0.890 - - - - -
83. TAF3 ENSGALG00000006731 15569 0.89 - - - - 0.890 - - - - - TATA-box binding protein associated factor 3 [Source:NCBI gene;Acc:419107]
84. ZC3H6 ENSGALG00000008269 10353 0.888 - - - - 0.888 - - - - - zinc finger CCCH-type containing 6 [Source:NCBI gene;Acc:421230]
85. DLD ENSGALG00000007931 11011 0.888 - - - - 0.888 - - - - - dihydrolipoamide dehydrogenase [Source:NCBI gene;Acc:417699]
86. PRKX ENSGALG00000042759 2418 0.887 - - - - - - 0.887 - - - protein kinase X-linked [Source:HGNC Symbol;Acc:HGNC:9441]
87. VMA21 ENSGALG00000009065 6432 0.887 - - - - 0.887 - - - - - VMA21, vacuolar ATPase assembly factor [Source:NCBI gene;Acc:422385]
88. CAMK2D ENSGALG00000041635 3384 0.887 - - - - - - 0.887 - - - calcium/calmodulin dependent protein kinase II delta [Source:NCBI gene;Acc:422688]
89. VPS13B 2293 0.887 - - - - - - 0.887 - - - vacuolar protein sorting 13 homolog B
90. ARG2 ENSGALG00000009519 19523 0.887 - - - - - - 0.887 - - - arginase 2 [Source:NCBI gene;Acc:423272]
91. WWP1 ENSGALG00000041795 2291 0.887 - - - - - - 0.887 - - - WW domain containing E3 ubiquitin protein ligase 1 [Source:NCBI gene;Acc:420212]
92. GATC ENSGALG00000007195 8610 0.886 - - - - 0.886 - - - - - glutamyl-tRNA amidotransferase subunit C, transcript variant X2
93. ZNF462 ENSGALG00000015451 12653 0.886 - - - - - - 0.886 - - - zinc finger protein 462 [Source:HGNC Symbol;Acc:HGNC:21684]
94. SGK1 ENSGALG00000013971 2608 0.886 - - - - - - 0.886 - - - serum/glucocorticoid regulated kinase 1 [Source:NCBI gene;Acc:395133]
95. TRAPPC8 ENSGALG00000015157 4308 0.886 - - - - - - 0.886 - - - trafficking protein particle complex 8, transcript variant X5
96. RBM24 ENSGALG00000012712 4138 0.886 - - - - - - 0.886 - - - RNA binding motif protein 24 [Source:NCBI gene;Acc:420846]
97. C5H15ORF57 C5H15ORF57 4113 0.886 - - - - - - 0.886 - - -
98. RND3 ENSGALG00000026313 9271 0.886 - - - - - - 0.886 - - - Rho family GTPase 3 [Source:HGNC Symbol;Acc:HGNC:671]
99. ANO5 ENSGALG00000003748 3959 0.886 - - - - - - 0.886 - - - anoctamin 5 [Source:NCBI gene;Acc:422973]
100. DENR ENSGALG00000003795 30805 0.886 - - - - 0.886 - - - - - density regulated re-initiation and release factor [Source:NCBI gene;Acc:771794]

There are 159 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA