Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for SMARCAL1

Gene Name Gene ID Reads Annotation
SMARCAL1 ENSGALG00000011475 1948 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1 [Source:HGNC Symbol;Acc:HGNC:11102]











Genes with expression patterns similar to SMARCAL1

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. SMARCAL1 ENSGALG00000011475 1948 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1 [Source:HGNC Symbol;Acc:HGNC:11102]
2. RRP7A ENSGALG00000011866 7718 1.481 - - - - - - 0.713 0.768 - - ribosomal RNA processing 7 homolog A [Source:NCBI gene;Acc:417975]
3. CHMP1B ENSGALG00000040746 4031 1.403 - - - - - - 0.703 0.700 - - charged multivesicular body protein 1B [Source:NCBI gene;Acc:422143]
4. FMN1 ENSGALG00000009723 100 0.84 - - - - - 0.840 - - - - formin 1 [Source:NCBI gene;Acc:386747]
5. KCNE3 ENSGALG00000022696 561 0.824 - - - - - 0.824 - - - - potassium voltage-gated channel subfamily E regulatory subunit 3 [Source:HGNC Symbol;Acc:HGNC:6243]
6. TXNDC9 ENSGALG00000032090 6804 0.816 - - - - - - 0.816 - - - thioredoxin domain containing 9 [Source:HGNC Symbol;Acc:HGNC:24110]
7. MKL2 186 0.815 - - - - - 0.815 - - - - MKL1/myocardin like 2, transcript variant X4
8. ZFYVE28 15 0.813 - - - - - 0.813 - - - - zinc finger FYVE-type containing 28, transcript variant X3
9. CPOX ENSGALG00000015240 5292 0.809 - - - - - - - 0.809 - - coproporphyrinogen oxidase
10. DNAH12 ENSGALG00000005601 80 0.802 - - - - - 0.802 - - - - dynein, axonemal, heavy chain 12, transcript variant X6
11. KIAA1919 KIAA1919 58 0.797 - - - - - 0.797 - - - -
12. EIF4ENIF1 ENSGALG00000006898 24 0.796 - - - - - 0.796 - - - - eukaryotic translation initiation factor 4E nuclear import factor 1 [Source:HGNC Symbol;Acc:HGNC:16687]
13. AGO1 ENSGALG00000002249 125 0.794 - - - - - 0.794 - - - - argonaute 1, RISC catalytic component [Source:NCBI gene;Acc:428222]
14. LY96 ENSGALG00000032701 18 0.794 - - - - - 0.794 - - - - lymphocyte antigen 96 [Source:HGNC Symbol;Acc:HGNC:17156]
15. PVALB1 PVALB1 267 0.794 - - - - - 0.794 - - - -
16. DPP10 ENSGALG00000012156 20 0.794 - - - - - 0.794 - - - - dipeptidyl peptidase like 10 [Source:HGNC Symbol;Acc:HGNC:20823]
17. ATP6V1AL ENSGALG00000000048 21 0.794 - - - - - 0.794 - - - - ATPase H+ transporting V1 subunit A-like, transcript variant X2
18. ALDH6A1 ENSGALG00000010211 29 0.794 - - - - - 0.794 - - - - aldehyde dehydrogenase 6 family member A1 [Source:HGNC Symbol;Acc:HGNC:7179]
19. PPIP5K1 ENSGALG00000008385 7 0.794 - - - - - 0.794 - - - - diphosphoinositol pentakisphosphate kinase 1 [Source:HGNC Symbol;Acc:HGNC:29023]
20. FAM208B 24 0.794 - - - - - 0.794 - - - - family with sequence similarity 208 member B, transcript variant X3
21. ENSGALG00000023485 ENSGALG00000023485 46 0.794 - - - - - 0.794 - - - -
22. PPM1L ENSGALG00000009537 5 0.794 - - - - - 0.794 - - - - protein phosphatase, Mg2+/Mn2+ dependent 1L [Source:HGNC Symbol;Acc:HGNC:16381]
23. RNFT1 ENSGALG00000005205 2888 0.791 - - - - - - 0.791 - - - ring finger protein, transmembrane 1 [Source:HGNC Symbol;Acc:HGNC:30206]
24. SGOL1 SGOL1 3919 0.787 - - - - - - 0.787 - - -
25. MED28 ENSGALG00000007138 7686 0.787 - - - - - - 0.787 - - - mediator complex subunit 28 [Source:HGNC Symbol;Acc:HGNC:24628]
26. THAP5 ENSGALG00000009494 6540 0.784 - - - - - - 0.784 - - - THAP domain containing 5 [Source:NCBI gene;Acc:417784]
27. CASR ENSGALG00000038405 53 0.784 - - - - - 0.784 - - - - calcium sensing receptor [Source:HGNC Symbol;Acc:HGNC:1514]
28. EVA1CL ENSGALG00000004734 168 0.783 - - - - - 0.783 - - - - protein eva-1 homolog C-like, transcript variant X2
29. BLMH ENSGALG00000004259 36907 0.782 - - - - - - - 0.782 - - bleomycin hydrolase [Source:NCBI gene;Acc:395996]
30. CYB5A ENSGALG00000013708 8287 0.779 - - - - - - 0.779 - - - cytochrome b5 type A [Source:NCBI gene;Acc:414798]
31. RGS12 ENSGALG00000015626 280 0.778 - - - - - 0.778 - - - - regulator of G protein signaling 12 [Source:HGNC Symbol;Acc:HGNC:9994]
32. ENSGALG00000006296 ENSGALG00000006296 625 0.777 - - - - - 0.777 - - - -
33. CMAS ENSGALG00000013229 1941 0.776 - - - - - - - 0.776 - - cytidine monophosphate N-acetylneuraminic acid synthetase [Source:HGNC Symbol;Acc:HGNC:18290]
34. TAF1D ENSGALG00000017220 3012 0.774 - - - - - - - 0.774 - - TATA-box binding protein associated factor, RNA polymerase I subunit D [Source:HGNC Symbol;Acc:HGNC:28759]
35. MRPL15 ENSGALG00000041086 16820 0.774 - - - - - - 0.774 - - - mitochondrial ribosomal protein L15 [Source:NCBI gene;Acc:421121]
36. SPCS1 ENSGALG00000001655 7718 0.773 - - - - - - - 0.773 - - signal peptidase complex subunit 1 [Source:NCBI gene;Acc:415899]
37. PTRH2 ENSGALG00000005150 4756 0.773 - - - - - - - 0.773 - - peptidyl-tRNA hydrolase 2 [Source:NCBI gene;Acc:417634]
38. RBM48 ENSGALG00000009467 1096 0.772 - - - - - - 0.772 - - - RNA binding motif protein 48 [Source:NCBI gene;Acc:420555]
39. RCOR3 ENSGALG00000009871 7022 0.772 - - - - - - 0.772 - - - REST corepressor 3 [Source:NCBI gene;Acc:421380]
40. ATAD5 ENSGALG00000003294 4830 0.771 - - - - - - 0.771 - - - ATPase family, AAA domain containing 5 [Source:NCBI gene;Acc:417408]
41. LRRC58 ENSGALG00000033186 15 0.77 - - - - - 0.770 - - - - leucine rich repeat containing 58 [Source:HGNC Symbol;Acc:HGNC:26968]
42. CRAMP1 ENSGALG00000009341 2124 0.769 - - - - - - - 0.769 - - cramped chromatin regulator homolog 1 [Source:HGNC Symbol;Acc:HGNC:14122]
43. MCF2L2 ENSGALG00000008744 8 0.768 - - - - - 0.768 - - - - MCF.2 cell line derived transforming sequence-like 2 [Source:HGNC Symbol;Acc:HGNC:30319]
44. MTIF3 ENSGALG00000017097 2524 0.766 - - - - - - 0.766 - - - mitochondrial translational initiation factor 3 [Source:NCBI gene;Acc:418930]
45. C16orf72 ENSGALG00000007291 228 0.766 - - - - - 0.766 - - - - chromosome 16 open reading frame 72 [Source:HGNC Symbol;Acc:HGNC:30103]
46. CCNH ENSGALG00000015641 8051 0.765 - - - - - - - 0.765 - - cyclin H [Source:HGNC Symbol;Acc:HGNC:1594]
47. PTPMT1 ENSGALG00000008091 6160 0.764 - - - - - - 0.764 - - - protein tyrosine phosphatase, mitochondrial 1 [Source:NCBI gene;Acc:423181]
48. EIF5B ENSGALG00000016764 30681 0.762 - - - - - - - 0.762 - - eukaryotic translation initiation factor 5B [Source:NCBI gene;Acc:395514]
49. RNF145 ENSGALG00000003691 2635 0.762 - - - - - - 0.762 - - - ring finger protein 145 [Source:HGNC Symbol;Acc:HGNC:20853]
50. CHDZ CHDZ 10381 0.761 - - - - - - - 0.761 - -
51. uc_6 uc_6 14 0.76 - - - - - 0.760 - - - -
52. DNAJB12 ENSGALG00000034104 3021 0.76 - - - - - - 0.760 - - - DnaJ heat shock protein family (Hsp40) member B12 [Source:NCBI gene;Acc:423707]
53. PCDH12 ENSGALG00000002544 36 0.76 - - - - - 0.760 - - - - protocadherin 12 [Source:HGNC Symbol;Acc:HGNC:8657]
54. CACNA1S 63 0.759 - - - - - 0.759 - - - - calcium voltage-gated channel subunit alpha1 S, transcript variant X4
55. PGM5 ENSGALG00000014995 1238 0.758 - - - - - 0.758 - - - - phosphoglucomutase 5 [Source:HGNC Symbol;Acc:HGNC:8908]
56. SLC25A26 ENSGALG00000007467 255 0.757 - - - - - 0.757 - - - - solute carrier family 25 member 26 [Source:NCBI gene;Acc:416084]
57. TRMT10A ENSGALG00000012264 2467 0.756 - - - - - - 0.756 - - - tRNA methyltransferase 10A [Source:HGNC Symbol;Acc:HGNC:28403]
58. MED21 ENSGALG00000027435 5766 0.756 - - - - - - - 0.756 - - mediator complex subunit 21 [Source:HGNC Symbol;Acc:HGNC:11473]
59. DLAT ENSGALG00000007904 3297 0.755 - - - - - - - 0.755 - - dihydrolipoamide S-acetyltransferase [Source:HGNC Symbol;Acc:HGNC:2896]
60. ZNF830 ENSGALG00000013156 3896 0.755 - - - - - - - 0.755 - - zinc finger protein 830
61. C3AR1 ENSGALG00000013218 32 0.754 - - - - - 0.754 - - - - complement C3a receptor 1 [Source:NCBI gene;Acc:418198]
62. CTSL2 CTSL2 7966 0.753 - - - - - - 0.753 - - -
63. UQCRH ENSGALG00000017380 55734 0.753 - - - - - - 0.753 - - - ubiquinol-cytochrome c reductase hinge protein [Source:NCBI gene;Acc:771939]
64. MAP4K5 ENSGALG00000012321 3036 0.753 - - - - - - 0.753 - - - mitogen-activated protein kinase kinase kinase kinase 5 [Source:HGNC Symbol;Acc:HGNC:6867]
65. KIAA1239 KIAA1239 263 0.752 - - - - - 0.752 - - - -
66. TXNRD1 ENSGALG00000035345 4784 0.752 - - - - - - - 0.752 - - Gallus gallus thioredoxin reductase 1 (TXNRD1), transcript variant 2, mRNA. [Source:RefSeq mRNA;Acc:NM_001352023]
67. NUP85 ENSGALG00000007974 21249 0.752 - - - - - - - 0.752 - - nucleoporin 85 [Source:NCBI gene;Acc:422120]
68. NIP7 ENSGALG00000000650 23932 0.752 - - - - - - - 0.752 - - NIP7, nucleolar pre-rRNA processing protein [Source:NCBI gene;Acc:415863]
69. AP3S2 ENSGALG00000008291 7574 0.751 - - - - - - 0.751 - - - adaptor related protein complex 3 sigma 2 subunit [Source:NCBI gene;Acc:415581]
70. ZCCHC9 ENSGALG00000015603 3118 0.751 - - - - - - 0.751 - - - zinc finger CCHC-type containing 9 [Source:HGNC Symbol;Acc:HGNC:25424]
71. CARD11 ENSGALG00000004398 58 0.751 - - - - - 0.751 - - - - caspase recruitment domain family member 11 [Source:NCBI gene;Acc:416476]
72. MRPL2 ENSGALG00000008597 16500 0.751 - - - - - - - 0.751 - - mitochondrial ribosomal protein L2 [Source:HGNC Symbol;Acc:HGNC:14056]
73. PHF14 ENSGALG00000038041 13687 0.751 - - - - - - - 0.751 - - PHD finger protein 14 [Source:NCBI gene;Acc:420583]
74. FAM171A1 ENSGALG00000008764 349 0.75 - - - - - 0.750 - - - - family with sequence similarity 171 member A1 [Source:HGNC Symbol;Acc:HGNC:23522]
75. SHC1 ENSGALG00000039775 219 0.749 - - - - - 0.749 - - - - SHC adaptor protein 1 [Source:NCBI gene;Acc:395934]
76. WRNIP1 ENSGALG00000012856 1954 0.748 - - - - - - - 0.748 - - Werner helicase interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:20876]
77. ZC3H13 ENSGALG00000016984 21043 0.748 - - - - - - 0.748 - - - zinc finger CCCH-type containing 13 [Source:HGNC Symbol;Acc:HGNC:20368]
78. ENSGALG00000025953 ENSGALG00000025953 65 0.747 - - - - - 0.747 - - - -
79. CLTCL1 ENSGALG00000041760 9351 0.747 - - - - - - 0.747 - - - clathrin, heavy chain-like 1, transcript variant X6
80. SZRD1 ENSGALG00000003734 3344 0.746 - - - - - - 0.746 - - - SUZ RNA binding domain containing 1 [Source:NCBI gene;Acc:419462]
81. DDX59 ENSGALG00000002164 3314 0.746 - - - - - - 0.746 - - - DEAD-box helicase 59 [Source:HGNC Symbol;Acc:HGNC:25360]
82. FAM122A ENSGALG00000006127 9630 0.745 - - - - - - 0.745 - - - family with sequence similarity 122A [Source:NCBI gene;Acc:422237]
83. CDCA7 ENSGALG00000040833 7484 0.745 - - - - - - 0.745 - - - cell division cycle associated 7 [Source:HGNC Symbol;Acc:HGNC:14628]
84. DIMT1 ENSGALG00000020569 5150 0.744 - - - - - - 0.744 - - - DIM1 dimethyladenosine transferase 1 homolog [Source:HGNC Symbol;Acc:HGNC:30217]
85. RFC3 ENSGALG00000017064 7011 0.743 - - - - - 0.743 - - - - replication factor C subunit 3 [Source:NCBI gene;Acc:418907]
86. CASP6 ENSGALG00000012186 6639 0.743 - - - - - - - 0.743 - - caspase 6 [Source:NCBI gene;Acc:395477]
87. ABHD13 ENSGALG00000016853 4975 0.743 - - - - - - - 0.743 - - abhydrolase domain containing 13 [Source:NCBI gene;Acc:418763]
88. MSMO1 ENSGALG00000009560 6928 0.742 - - - - - - 0.742 - - - methylsterol monooxygenase 1 [Source:NCBI gene;Acc:422423]
89. ENSGALG00000027621 ENSGALG00000027621 863 0.742 - - - - - 0.742 - - - -
90. MRPL53 ENSGALG00000037867 6100 0.742 - - - - - - 0.742 - - - mitochondrial ribosomal protein L53 [Source:NCBI gene;Acc:420196]
91. GARNL3 ENSGALG00000000847 3423 0.741 - - - - - - - 0.741 - - GTPase activating Rap/RanGAP domain like 3 [Source:NCBI gene;Acc:417087]
92. BRD9 4377 0.741 - - - - - - - 0.741 - - bromodomain containing 9, transcript variant X3
93. TUSC2 ENSGALG00000041338 1876 0.74 - - 0.740 - - - - - - - tumor suppressor 2, mitochondrial calcium regulator [Source:HGNC Symbol;Acc:HGNC:17034]
94. ABCD2 ENSGALG00000042554 1607 0.739 - - - - - - 0.739 - - - ATP binding cassette subfamily D member 2 [Source:NCBI gene;Acc:417694]
95. ENSGALG00000005720 ENSGALG00000005720 1666 0.739 - - - - - 0.739 - - - -
96. RIT1 ENSGALG00000014647 7174 0.738 - - - - - - - 0.738 - - Ras like without CAAX 1 [Source:NCBI gene;Acc:425068]
97. CDC42BPB ENSGALG00000011432 8220 0.738 - - - - - - - 0.738 - - CDC42 binding protein kinase beta [Source:HGNC Symbol;Acc:HGNC:1738]
98. RAB35 ENSGALG00000007308 6300 0.738 - - - - - - 0.738 - - - RAB35, member RAS oncogene family [Source:NCBI gene;Acc:416983]
99. MAFK ENSGALG00000004189 1195 0.738 - - - - - 0.738 - - - - MAF bZIP transcription factor K [Source:NCBI gene;Acc:395518]
100. GINS3 ENSGALG00000031209 32 0.737 - - - - - 0.737 - - - - GINS complex subunit 3 [Source:HGNC Symbol;Acc:HGNC:25851]

There are 137 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA