Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for SMARCA1

Gene Name Gene ID Reads Annotation
SMARCA1 ENSDARG00000012776 673 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 [Source:ZFIN;Acc:ZDB-GENE-070705-296]










Genes with expression patterns similar to SMARCA1

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. SMARCA1 ENSDARG00000012776 673 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 [Source:ZFIN;Acc:ZDB-GENE-070705-296]
2. ptp4a2 ptp4a2 3196 1.981 - 0.989 - - - 0.992 - - -
3. nt5c2b ENSDARG00000058231 3822 1.891 - 0.905 - - - 0.986 - - - 5'-nucleotidase, cytosolic IIb [Source:ZFIN;Acc:ZDB-GENE-061013-522]
4. amd1 ENSDARG00000043856, ENSDARG00000111778 9667 1.823 - 0.876 - - - 0.947 - - - adenosylmethionine decarboxylase 1 [Source:ZFIN;Acc:ZDB-GENE-040426-760]
5. si:ch73-375g18.1 ENSDARG00000075024 2431 1.775 - - - - - 0.991 0.784 - - si:ch73-375g18.1 [Source:ZFIN;Acc:ZDB-GENE-110408-56]
6. GRAMD1B GRAMD1B 311 1.774 0.777 0.997 - - - - - - -
7. ctsf ENSDARG00000063095 4564 1.747 - - - - - 0.991 0.756 - - cathepsin F [Source:ZFIN;Acc:ZDB-GENE-030131-9831]
8. maea ENSDARG00000053691 1840 1.736 - 0.992 - - - - 0.744 - - macrophage erythroblast attacher [Source:ZFIN;Acc:ZDB-GENE-030131-294]
9. klf3 ENSDARG00000015495, ENSDARG00000114143 1640 1.727 - 0.963 - - - - 0.764 - - Kruppel-like factor 3 (basic) [Source:ZFIN;Acc:ZDB-GENE-011116-1]
10. cdc42se1 ENSDARG00000023724 3901 1.708 - 0.982 - - - - 0.726 - - CDC42 small effector 1 [Source:ZFIN;Acc:ZDB-GENE-030131-9260]
11. march5l ENSDARG00000028559 943 1.702 - 0.991 - - - - 0.711 - - membrane-associated ring finger (C3HC4) 5, like [Source:ZFIN;Acc:ZDB-GENE-030131-4792]
12. slc3a2a ENSDARG00000036427, ENSDARG00000112231 2967 1.7 - 0.977 - - - - 0.723 - - solute carrier family 3 (amino acid transporter heavy chain), member 2a [Source:ZFIN;Acc:ZDB-GENE-000831-3]
13. myl6 ENSDARG00000008494, ENSDARG00000115496 16296 1.699 - - - - - 0.974 0.725 - - myosin, light chain 6, alkali, smooth muscle and non-muscle [Source:ZFIN;Acc:ZDB-GENE-041010-28]
14. znf385a ENSDARG00000009899 3433 1.671 - 0.940 - - - - - 0.731 - zinc finger protein 385A [Source:ZFIN;Acc:ZDB-GENE-090313-255]
15. ftr82 ENSDARG00000055647 3302 1.635 - 0.924 - - - - 0.711 - - finTRIM family, member 82 [Source:ZFIN;Acc:ZDB-GENE-030219-207]
16. snrka ENSDARG00000070832 1366 1.441 - - - - - - 0.701 0.740 - SNF related kinase a [Source:ZFIN;Acc:ZDB-GENE-040718-84]
17. dclk1a ENSDARG00000018856 177 1.416 0.703 - - - - - - 0.713 - doublecortin-like kinase 1a [Source:ZFIN;Acc:ZDB-GENE-061013-124]
18. si:dkey-3d4.3 ENSDARG00000074079 365 0.999 - - - - - 0.999 - - - si:dkey-3d4.3 [Source:ZFIN;Acc:ZDB-GENE-070912-527]
19. C13H10orf54 C13H10orf54 450 0.999 - 0.999 - - - - - - -
20. traf4b ENSDARG00000038964 346 0.999 - 0.999 - - - - - - - tnf receptor-associated factor 4b [Source:ZFIN;Acc:ZDB-GENE-040305-2]
21. sh3yl1 ENSDARG00000074393 815 0.998 - - - - - 0.998 - - - SH3 and SYLF domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-040128-16]
22. CTIF ENSDARG00000090617 270 0.998 - 0.998 - - - - - - - CBP80/20-dependent translation initiation factor [Source:ZFIN;Acc:ZDB-GENE-130530-1003]
23. ahr2 ENSDARG00000021833 762 0.998 - 0.998 - - - - - - - aryl hydrocarbon receptor 2 [Source:ZFIN;Acc:ZDB-GENE-990714-16]
24. snx16 ENSDARG00000046072 931 0.998 - 0.998 - - - - - - - sorting nexin 16 [Source:ZFIN;Acc:ZDB-GENE-040426-1832]
25. marveld2a ENSDARG00000025076 917 0.998 - 0.998 - - - - - - - MARVEL domain containing 2a [Source:ZFIN;Acc:ZDB-GENE-050411-59]
26. kdm8 ENSDARG00000102512 321 0.998 - 0.998 - - - - - - - lysine (K)-specific demethylase 8 [Source:ZFIN;Acc:ZDB-GENE-040718-411]
27. wu:fb12e11 wu:fb12e11 2332 0.998 - 0.998 - - - - - - -
28. dnajb5 ENSDARG00000052881, ENSDARG00000116664 885 0.998 - 0.998 - - - - - - - DnaJ (Hsp40) homolog, subfamily B, member 5 [Source:ZFIN;Acc:ZDB-GENE-070705-308]
29. si:ch211-271g18.4 ENSDARG00000115564 197 0.998 - 0.998 - - - - - - - si:ch211-271g18.4 [Source:ZFIN;Acc:ZDB-GENE-110914-58]
30. zmat5 ENSDARG00000035434 983 0.998 - - - - - 0.998 - - - zinc finger, matrin-type 5 [Source:ZFIN;Acc:ZDB-GENE-040808-31]
31. pld2 ENSDARG00000034262 952 0.998 - - - - - 0.998 - - - phospholipase D2 [Source:ZFIN;Acc:ZDB-GENE-060216-4]
32. tmem110 497 0.998 - 0.998 - - - - - - - transmembrane protein 110
33. prmt6 ENSDARG00000069706 484 0.998 - 0.998 - - - - - - - protein arginine methyltransferase 6 [Source:ZFIN;Acc:ZDB-GENE-040914-7]
34. CR293507.1 ENSDARG00000112572 3198 0.998 - 0.998 - - - - - - -
35. GPR108 ENSDARG00000096651 1734 0.998 - - - - - 0.998 - - - G protein-coupled receptor 108 [Source:ZFIN;Acc:ZDB-GENE-121214-129]
36. kif3a ENSDARG00000087538, ENSDARG00000109880, ENSDARG00000117005 1216 0.998 - 0.998 - - - - - - - kinesin family member 3A [Source:ZFIN;Acc:ZDB-GENE-050417-71]
37. rc3h1 rc3h1 1087 0.998 - - - - - 0.998 - - -
38. supt20 ENSDARG00000078658 713 0.998 - 0.998 - - - - - - - SPT20 homolog, SAGA complex component [Source:ZFIN;Acc:ZDB-GENE-091204-264]
39. si:ch211-208h7.4 si:ch211-208h7.4 1334 0.998 - - - - - 0.998 - - -
40. gle1 ENSDARG00000043559 1362 0.998 - 0.998 - - - - - - - GLE1 RNA export mediator homolog (yeast) [Source:ZFIN;Acc:ZDB-GENE-040831-4]
41. exoc1 ENSDARG00000043019 819 0.998 - 0.998 - - - - - - - exocyst complex component 1 [Source:ZFIN;Acc:ZDB-GENE-030131-1057]
42. nrd1 nrd1 324 0.998 - 0.998 - - - - - - -
43. sgce ENSDARG00000012138 912 0.998 - 0.998 - - - - - - - sarcoglycan, epsilon [Source:ZFIN;Acc:ZDB-GENE-030724-1]
44. farp1 ENSDARG00000074381 406 0.998 - 0.998 - - - - - - - FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived) [Source:ZFIN;Acc:ZDB-GENE-070424-163]
45. nucb2b ENSDARG00000036291 911 0.998 - 0.998 - - - - - - - nucleobindin 2b [Source:ZFIN;Acc:ZDB-GENE-030131-4775]
46. ncam1b ENSDARG00000007220 233 0.998 - 0.998 - - - - - - - neural cell adhesion molecule 1b [Source:ZFIN;Acc:ZDB-GENE-010822-2]
47. CASKIN2_1 CASKIN2_1 2299 0.998 - - - - - 0.998 - - -
48. adm2a ENSDARG00000045708, ENSDARG00000111740 246 0.998 - 0.998 - - - - - - - adrenomedullin 2a [Source:ZFIN;Acc:ZDB-GENE-041210-100]
49. prkab1a ENSDARG00000044183 264 0.998 - 0.998 - - - - - - - protein kinase, AMP-activated, beta 1 non-catalytic subunit, a [Source:ZFIN;Acc:ZDB-GENE-040718-377]
50. olfm2a ENSDARG00000077847 230 0.998 - 0.998 - - - - - - - olfactomedin 2a [Source:ZFIN;Acc:ZDB-GENE-040426-2882]
51. ENSDARG00000096553 ENSDARG00000096553 388 0.998 - 0.998 - - - - - - -
52. nog2 ENSDARG00000043066 233 0.997 - - - - - 0.997 - - - noggin 2 [Source:ZFIN;Acc:ZDB-GENE-991206-14]
53. pah ENSDARG00000020143 1551 0.997 - 0.997 - - - - - - - phenylalanine hydroxylase [Source:ZFIN;Acc:ZDB-GENE-031006-2]
54. SLC12A6 SLC12A6 883 0.997 - 0.997 - - - - - - -
55. clip2 ENSDARG00000059596 529 0.997 - - - - - 0.997 - - - CAP-GLY domain containing linker protein 2 [Source:ZFIN;Acc:ZDB-GENE-100727-3]
56. cyb561a3a ENSDARG00000056281 667 0.997 - - - - - 0.997 - - - cytochrome b561 family, member A3a [Source:ZFIN;Acc:ZDB-GENE-060526-374]
57. HEATR6 ENSDARG00000073686 241 0.997 - 0.997 - - - - - - - HEAT repeat containing 6 [Source:ZFIN;Acc:ZDB-GENE-080204-118]
58. si:ch211-129c21.1 ENSDARG00000024775 371 0.997 - 0.997 - - - - - - - si:ch211-129c21.1 [Source:ZFIN;Acc:ZDB-GENE-030131-5796]
59. TRIM35_3 TRIM35_3 172 0.997 - - - - - 0.997 - - -
60. zmynd8 ENSDARG00000007601 405 0.997 - - - - - 0.997 - - - zinc finger, MYND-type containing 8 [Source:ZFIN;Acc:ZDB-GENE-041119-1]
61. nicn1 ENSDARG00000069677, ENSDARG00000116330 790 0.997 - - - - - 0.997 - - - nicolin 1 [Source:ZFIN;Acc:ZDB-GENE-040801-129]
62. sec63 ENSDARG00000017740 3789 0.997 - - - - - 0.997 - - - SEC63 homolog, protein translocation regulator [Source:ZFIN;Acc:ZDB-GENE-040718-328]
63. lap3 ENSDARG00000061981 1188 0.997 - - - - - 0.997 - - - leucine aminopeptidase 3 [Source:ZFIN;Acc:ZDB-GENE-060719-1]
64. ypel1 ENSDARG00000035630, ENSDARG00000112717 739 0.997 - 0.997 - - - - - - - yippee-like 1 [Source:ZFIN;Acc:ZDB-GENE-040808-41]
65. mapk12a ENSDARG00000042021 1573 0.997 - 0.997 - - - - - - - mitogen-activated protein kinase 12a [Source:ZFIN;Acc:ZDB-GENE-990415-257]
66. C19H1orf85 C19H1orf85 1587 0.997 - 0.997 - - - - - - -
67. trim44 ENSDARG00000051761 509 0.997 - - - - - 0.997 - - - tripartite motif containing 44 [Source:ZFIN;Acc:ZDB-GENE-050522-37]
68. amt ENSDARG00000010862, ENSDARG00000113280 367 0.997 - - - - - 0.997 - - - aminomethyltransferase [Source:ZFIN;Acc:ZDB-GENE-041010-114]
69. VPS37C ENSDARG00000031836 906 0.997 - - - - - 0.997 - - - vacuolar protein sorting 37 homolog C (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-061110-126]
70. CABZ01057907.1 CABZ01057907.1 1140 0.997 - 0.997 - - - - - - -
71. tfg ENSDARG00000003641, ENSDARG00000115188 3834 0.997 - - - - - 0.997 - - - trk-fused gene [Source:ZFIN;Acc:ZDB-GENE-030131-8410]
72. rabgef1 ENSDARG00000014430 1176 0.997 - - - - - 0.997 - - - RAB guanine nucleotide exchange factor (GEF) 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1486]
73. si:ch211-133l11.10 ENSDARG00000005626 381 0.997 - 0.997 - - - - - - - si:ch211-133l11.10 [Source:ZFIN;Acc:ZDB-GENE-141219-14]
74. zgc:112484 zgc:112484 780 0.997 - - - - - 0.997 - - -
75. zgc:113208 ENSDARG00000035610, ENSDARG00000109302 1095 0.997 - 0.997 - - - - - - - zgc:113208 [Source:ZFIN;Acc:ZDB-GENE-050417-450]
76. mxf ENSDARG00000026049 195 0.997 - 0.997 - - - - - - - myxovirus (influenza virus) resistance F [Source:ZFIN;Acc:ZDB-GENE-030721-9]
77. pank2 ENSDARG00000003311 881 0.997 - - - - - 0.997 - - - pantothenate kinase 2 [Source:ZFIN;Acc:ZDB-GENE-070112-1952]
78. dfna5 dfna5 361 0.997 - - - - - 0.997 - - -
79. las1l ENSDARG00000062457, ENSDARG00000114475 3987 0.997 - - - - - 0.997 - - - LAS1-like, ribosome biogenesis factor [Source:ZFIN;Acc:ZDB-GENE-030131-3625]
80. ITFG1 ENSDARG00000075584, ENSDARG00000110264 615 0.997 - 0.997 - - - - - - - integrin alpha FG-GAP repeat containing 1 [Source:ZFIN;Acc:ZDB-GENE-121003-3]
81. tdrd3 ENSDARG00000025421 633 0.997 - - - - - 0.997 - - - tudor domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-040426-19]
82. tbc1d23 ENSDARG00000044357, ENSDARG00000109696 6272 0.997 - 0.997 - - - - - - - TBC1 domain family, member 23 [Source:ZFIN;Acc:ZDB-GENE-040426-1253]
83. SLC6A16_1 SLC6A16_1 1130 0.997 - 0.997 - - - - - - -
84. acmsd ENSDARG00000062549 201 0.997 - 0.997 - - - - - - - aminocarboxymuconate semialdehyde decarboxylase [Source:ZFIN;Acc:ZDB-GENE-070410-103]
85. BRCC3 ENSDARG00000098242 1123 0.997 - - - - - 0.997 - - - BRCA1/BRCA2-containing complex, subunit 3 [Source:ZFIN;Acc:ZDB-GENE-100215-1]
86. zgc:113625 ENSDARG00000054160 276 0.997 - 0.997 - - - - - - - zgc:113625 [Source:ZFIN;Acc:ZDB-GENE-050320-47]
87. pbxip1b ENSDARG00000011824 3726 0.997 - - - - - 0.997 - - - pre-B-cell leukemia homeobox interacting protein 1b [Source:ZFIN;Acc:ZDB-GENE-070112-2032]
88. KIF2A ENSDARG00000043571 1560 0.997 - 0.997 - - - - - - - kinesin family member 2A [Source:HGNC Symbol;Acc:HGNC:6318]
89. PDPR ENSDARG00000103288 711 0.996 - 0.996 - - - - - - - pyruvate dehydrogenase phosphatase regulatory subunit [Source:HGNC Symbol;Acc:HGNC:30264]
90. ppp2r2a ppp2r2a 5785 0.996 - - - - - 0.996 - - -
91. STARD7 ENSDARG00000074858 889 0.996 - 0.996 - - - - - - - StAR-related lipid transfer (START) domain containing 7 [Source:ZFIN;Acc:ZDB-GENE-030131-2310]
92. rbm42 ENSDARG00000039910 1111 0.996 - - - - - 0.996 - - - RNA binding motif protein 42 [Source:ZFIN;Acc:ZDB-GENE-040809-2]
93. zgc:171759_4 ENSDARG00000100259, ENSDARG00000109737, ENSDARG00000111964, ENSDARG00000114195, ENSDARG00000115938 327 0.996 - 0.996 - - - - - - - zgc:171759 [Source:ZFIN;Acc:ZDB-GENE-071004-32]
94. mrpl41 ENSDARG00000002264 1756 0.996 - - - - - 0.996 - - - mitochondrial ribosomal protein L41 [Source:ZFIN;Acc:ZDB-GENE-050522-200]
95. mcts1 ENSDARG00000025972 4662 0.996 - - - - - 0.996 - - - malignant T cell amplified sequence 1 [Source:ZFIN;Acc:ZDB-GENE-040426-957]
96. yipf1 ENSDARG00000014474 542 0.996 - - - - - 0.996 - - - Yip1 domain family, member 1 [Source:ZFIN;Acc:ZDB-GENE-040822-35]
97. arih1 ENSDARG00000003616, ENSDARG00000109413 1739 0.996 - 0.996 - - - - - - - ariadne ubiquitin-conjugating enzyme E2 binding protein homolog 1 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-030131-5213]
98. fktn ENSDARG00000059437, ENSDARG00000109351 340 0.996 - - - - - 0.996 - - - fukutin [Source:ZFIN;Acc:ZDB-GENE-070410-96]
99. creg2 ENSDARG00000000666 643 0.996 - - - - - 0.996 - - - cellular repressor of E1A-stimulated genes 2 [Source:ZFIN;Acc:ZDB-GENE-041114-173]
100. CASK CASK 1750 0.996 - 0.996 - - - - - - -

There are 665 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA