Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for SMAD4

Gene Name Gene ID Reads Annotation
SMAD4 SMAD4 3233










Genes with expression patterns similar to SMAD4

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. SMAD4 SMAD4 3233 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000
2. GATAD2B ENSDARG00000005834 3855 3.177 0.911 - - 0.711 - - - 0.849 0.706 GATA zinc finger domain containing 2B [Source:ZFIN;Acc:ZDB-GENE-060503-655]
3. smarcd1 ENSDARG00000019004 6028 3.026 0.787 - - 0.732 0.714 - - - 0.793 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1 [Source:ZFIN;Acc:ZDB-GENE-030131-1835]
4. bcl11ab ENSDARG00000063153 3032 3.026 - - 0.744 0.713 - - - 0.839 0.730 B cell CLL/lymphoma 11Ab [Source:ZFIN;Acc:ZDB-GENE-061009-4]
5. pip5k2 pip5k2 5743 2.594 0.749 0.994 - - - 0.851 - - -
6. nutf2l ENSDARG00000014499 3927 2.476 0.766 0.993 - - - - - 0.717 - nuclear transport factor 2, like [Source:ZFIN;Acc:ZDB-GENE-020416-1]
7. arfrp1 ENSDARG00000057857 2840 2.451 0.903 - - - - - 0.739 0.809 - ADP-ribosylation factor related protein 1 [Source:ZFIN;Acc:ZDB-GENE-050227-14]
8. srrm1 ENSDARG00000001244 4972 2.423 - - 0.783 - - 0.784 - - 0.856 serine/arginine repetitive matrix 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2789]
9. srsf9 ENSDARG00000008097 2405 2.409 0.812 - - - - - 0.710 - 0.887 serine/arginine-rich splicing factor 9 [Source:ZFIN;Acc:ZDB-GENE-040426-2397]
10. CR387996.1 ENSDARG00000097774 3037 2.383 0.877 - - - - - - 0.745 0.761
11. prdm16 prdm16 1346 2.295 - - 0.708 0.725 - - - 0.862 -
12. rbm4.2 ENSDARG00000055080 5241 2.291 - - - 0.710 - - - 0.737 0.844 RNA binding motif protein 4.2 [Source:ZFIN;Acc:ZDB-GENE-030131-3019]
13. zgc:174906 ENSDARG00000075314 2187 2.289 0.793 - 0.721 - - - - - 0.775 zgc:174906 [Source:ZFIN;Acc:ZDB-GENE-030131-6125]
14. pcdh18b ENSDARG00000052494, ENSDARG00000116134 1099 2.197 - - 0.753 0.712 - - - 0.732 - protocadherin 18b [Source:ZFIN;Acc:ZDB-GENE-080804-1]
15. ezh2 ENSDARG00000010571 3273 2.194 - - 0.748 0.711 - - - - 0.735 enhancer of zeste 2 polycomb repressive complex 2 subunit [Source:ZFIN;Acc:ZDB-GENE-041111-259]
16. tubb5 ENSDARG00000037997 18691 1.848 - 0.993 - - - - - 0.855 - tubulin, beta 5 [Source:ZFIN;Acc:ZDB-GENE-031110-4]
17. klc2 3058 1.815 - 0.998 - - - - - 0.817 - kinesin light chain 2
18. slc30a7 ENSDARG00000019998, ENSDARG00000112372 2967 1.807 - 0.996 - - - - 0.811 - - solute carrier family 30 (zinc transporter), member 7 [Source:ZFIN;Acc:ZDB-GENE-030131-5650]
19. ppp1caa ENSDARG00000003486, ENSDARG00000115977 5931 1.729 0.730 0.999 - - - - - - - protein phosphatase 1, catalytic subunit, alpha isozyme a [Source:ZFIN;Acc:ZDB-GENE-040516-3]
20. hnrnpub ENSDARG00000004735 16496 1.725 - 0.904 - - - - - - 0.821 heterogeneous nuclear ribonucleoprotein Ub [Source:ZFIN;Acc:ZDB-GENE-030131-6422]
21. fabp7a ENSDARG00000007697 5211 1.721 - 0.972 0.749 - - - - - - fatty acid binding protein 7, brain, a [Source:ZFIN;Acc:ZDB-GENE-000627-1]
22. pmm2 ENSDARG00000037654 1783 1.71 0.711 0.999 - - - - - - - phosphomannomutase 2 [Source:ZFIN;Acc:ZDB-GENE-030722-6]
23. aurkb ENSDARG00000037640 4874 1.709 - 0.997 - - - - - - 0.712 aurora kinase B [Source:ZFIN;Acc:ZDB-GENE-020419-40]
24. irf6 ENSDARG00000101986 1438 1.702 - 0.998 - - - - 0.704 - - interferon regulatory factor 6 [Source:ZFIN;Acc:ZDB-GENE-040426-1137]
25. hmgb3a ENSDARG00000056725 15668 1.699 - - - - - - - 0.860 0.839 high mobility group box 3a [Source:ZFIN;Acc:ZDB-GENE-050428-1]
26. cdk1 ENSDARG00000087554, ENSDARG00000110840 8297 1.698 - 0.960 - - - - - - 0.738 cyclin-dependent kinase 1 [Source:ZFIN;Acc:ZDB-GENE-010320-1]
27. apbb1 ENSDARG00000076560 1748 1.697 - 0.933 - - - - - 0.764 - amyloid beta (A4) precursor protein-binding, family B, member 1 (Fe65) [Source:ZFIN;Acc:ZDB-GENE-091118-127]
28. ppm1g ENSDARG00000075559 6516 1.693 - - - - - - - 0.822 0.871 protein phosphatase, Mg2+/Mn2+ dependent, 1G [Source:ZFIN;Acc:ZDB-GENE-030425-4]
29. sumo3a ENSDARG00000028119 13447 1.687 - 0.983 - 0.704 - - - - - small ubiquitin-like modifier 3a [Source:ZFIN;Acc:ZDB-GENE-040426-2133]
30. smarcc1a ENSDARG00000017397 2957 1.654 - - - 0.771 - - - - 0.883 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1a [Source:ZFIN;Acc:ZDB-GENE-080514-3]
31. pole ENSDARG00000058533, ENSDARG00000115430 381 1.65 0.891 - 0.759 - - - - - - polymerase (DNA directed), epsilon [Source:ZFIN;Acc:ZDB-GENE-070705-557]
32. tardbpl ENSDARG00000004452, ENSDARG00000116205 12160 1.649 - 0.921 - - - 0.728 - - - TAR DNA binding protein, like [Source:ZFIN;Acc:ZDB-GENE-031030-1]
33. abi1b ENSDARG00000062991 1564 1.649 0.818 - - - - - - - 0.831 abl-interactor 1b [Source:ZFIN;Acc:ZDB-GENE-060929-1182]
34. vezf1b ENSDARG00000061030 1410 1.637 0.820 - 0.817 - - - - - - vascular endothelial zinc finger 1b [Source:ZFIN;Acc:ZDB-GENE-060825-121]
35. SEC16A 1707 1.625 - - - - - 0.806 0.819 - - SEC16 homolog A, endoplasmic reticulum export factor, transcript variant X3
36. fam60al 2846 1.624 - - 0.748 - - - - - 0.876 family with sequence similarity 60, member A, like
37. Mar-06 Mar-06 953 1.616 0.830 - - - - - 0.786 - -
38. prkag1 ENSDARG00000003818 2800 1.608 0.828 - - - - - - 0.780 - protein kinase, AMP-activated, gamma 1 non-catalytic subunit [Source:ZFIN;Acc:ZDB-GENE-040426-2188]
39. smc1al ENSDARG00000058203 8838 1.607 - - 0.744 - - - - - 0.863 structural maintenance of chromosomes 1A, like [Source:ZFIN;Acc:ZDB-GENE-040426-57]
40. ACTR3 ENSDARG00000091138 1739 1.605 0.845 - - - - - 0.760 - - ARP3 actin related protein 3 homolog [Source:ZFIN;Acc:ZDB-GENE-040428-2]
41. fzd3a ENSDARG00000021664 1958 1.598 - - 0.798 - - - - 0.800 - frizzled class receptor 3a [Source:ZFIN;Acc:ZDB-GENE-990415-225]
42. pold3 ENSDARG00000076169 694 1.594 0.846 - - - - - - 0.748 - polymerase (DNA-directed), delta 3, accessory subunit [Source:ZFIN;Acc:ZDB-GENE-060512-59]
43. fyna ENSDARG00000011370 1679 1.592 - - - 0.722 - - - - 0.870 FYN proto-oncogene, Src family tyrosine kinase a [Source:ZFIN;Acc:ZDB-GENE-030903-5]
44. PTDSS2 ENSDARG00000101018 881 1.591 0.826 - - - - - 0.765 - - phosphatidylserine synthase 2 [Source:ZFIN;Acc:ZDB-GENE-130424-2]
45. rnps1 ENSDARG00000116743 9994 1.583 - - - - - 0.862 0.721 - - RNA binding protein S1, serine-rich domain [Source:NCBI gene;Acc:327020]
46. pgam5 ENSDARG00000035608 4044 1.582 - - - - - - - 0.789 0.793 PGAM family member 5, serine/threonine protein phosphatase, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-030131-683]
47. tead1a ENSDARG00000028159 3574 1.581 - - - - - - 0.761 0.820 - TEA domain family member 1a [Source:ZFIN;Acc:ZDB-GENE-040426-2101]
48. rbb4 rbb4 15541 1.58 - - 0.797 - - - - - 0.783
49. nat8l ENSDARG00000077256, ENSDARG00000115322 3513 1.58 - - 0.733 - - - - - 0.847 N-acetyltransferase 8-like [Source:ZFIN;Acc:ZDB-GENE-030729-4]
50. her4.2_1 ENSDARG00000056729, ENSDARG00000094426 2383 1.578 - - - - - - - 0.869 0.709 hairy-related 4, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-060815-1]
51. dvl2 ENSDARG00000056184 1525 1.577 0.870 - 0.707 - - - - - - dishevelled segment polarity protein 2 [Source:ZFIN;Acc:ZDB-GENE-041118-20]
52. ascl1a ENSDARG00000038386 1290 1.576 0.865 - 0.711 - - - - - - achaete-scute family bHLH transcription factor 1a [Source:ZFIN;Acc:ZDB-GENE-980526-90]
53. zgc:65772 zgc:65772 2092 1.576 - - - - - - - 0.806 0.770
54. mcm3ap ENSDARG00000021402 1271 1.559 - - - - - 0.728 0.831 - - minichromosome maintenance complex component 3 associated protein [Source:ZFIN;Acc:ZDB-GENE-040715-1]
55. si:ch211-161h7.4 ENSDARG00000087238 4399 1.558 0.818 - - - - - - 0.740 - si:ch211-161h7.4 [Source:ZFIN;Acc:ZDB-GENE-091118-108]
56. sipa1l2 ENSDARG00000061640 4545 1.554 - - - 0.755 - - - 0.799 - signal-induced proliferation-associated 1 like 2 [Source:ZFIN;Acc:ZDB-GENE-050208-66]
57. slc1a2b ENSDARG00000102453 3136 1.553 - - 0.725 - - - - 0.828 - solute carrier family 1 (glial high affinity glutamate transporter), member 2b [Source:ZFIN;Acc:ZDB-GENE-030131-7779]
58. huwe1 ENSDARG00000016782 6493 1.553 0.781 - - - - - 0.772 - - HECT, UBA and WWE domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-081104-387]
59. fbxo5 ENSDARG00000039020 1284 1.551 0.828 - 0.723 - - - - - - F-box protein 5 [Source:ZFIN;Acc:ZDB-GENE-030131-4027]
60. znf865 ENSDARG00000036698 15532 1.549 - - - 0.705 - - - - 0.844 zinc finger protein 865 [Source:ZFIN;Acc:ZDB-GENE-060503-896]
61. FOXK2 ENSDARG00000030583 5500 1.549 - - - - - 0.704 - - 0.845 forkhead box K2 [Source:ZFIN;Acc:ZDB-GENE-030131-2861]
62. puf60b ENSDARG00000001241 13827 1.549 - - - - - 0.748 - 0.801 - poly-U binding splicing factor b [Source:ZFIN;Acc:ZDB-GENE-040625-116]
63. gpx1a ENSDARG00000018146, ENSDARG00000114736 4652 1.547 0.797 - - - - - 0.750 - - glutathione peroxidase 1a [Source:ZFIN;Acc:ZDB-GENE-030410-1]
64. smad3a ENSDARG00000036096, ENSDARG00000117146 2668 1.546 - - - - - - - 0.759 0.787 SMAD family member 3a [Source:ZFIN;Acc:ZDB-GENE-000509-3]
65. prrg4 ENSDARG00000030753 1008 1.546 0.818 - - - - - 0.728 - - proline rich Gla (G-carboxyglutamic acid) 4 (transmembrane) [Source:ZFIN;Acc:ZDB-GENE-050417-112]
66. podxl ENSDARG00000031228 1744 1.546 - - 0.724 - - - - 0.822 - podocalyxin-like [Source:ZFIN;Acc:ZDB-GENE-030131-2805]
67. gipc1 ENSDARG00000104483 2913 1.545 - - 0.761 - - - - 0.784 - GIPC PDZ domain containing family, member 1 [Source:ZFIN;Acc:ZDB-GENE-060726-1]
68. kif22 ENSDARG00000102624 3694 1.544 - - - 0.705 - - - 0.839 - kinesin family member 22 [Source:ZFIN;Acc:ZDB-GENE-080204-34]
69. clasp2 ENSDARG00000020345 3382 1.542 - - - - - - - 0.803 0.739 cytoplasmic linker associated protein 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2343]
70. scaf4a ENSDARG00000077093 2408 1.542 - - - - - 0.721 - - 0.821 SR-related CTD-associated factor 4a [Source:ZFIN;Acc:ZDB-GENE-030131-9003]
71. anp32b ENSDARG00000023330 25013 1.535 - - - - - 0.801 0.734 - - acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:ZFIN;Acc:ZDB-GENE-030131-719]
72. sox2 ENSDARG00000070913 2763 1.534 - - 0.819 0.715 - - - - - SRY (sex determining region Y)-box 2 [Source:ZFIN;Acc:ZDB-GENE-030909-1]
73. rab5c ENSDARG00000026712 4733 1.533 0.798 - - - - - 0.735 - - RAB5C, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-031118-30]
74. mcm5 ENSDARG00000019507 6407 1.532 0.763 - - - - 0.769 - - - minichromosome maintenance complex component 5 [Source:ZFIN;Acc:ZDB-GENE-021209-1]
75. epb41a ENSDARG00000099283 860 1.531 - - - 0.761 - - - 0.770 - erythrocyte membrane protein band 4.1a [Source:ZFIN;Acc:ZDB-GENE-070705-81]
76. LDLRAD4 LDLRAD4 1237 1.529 - - - - - - - 0.796 0.733
77. jarid2b ENSDARG00000062268 2206 1.527 - - 0.780 0.747 - - - - - jumonji, AT rich interactive domain 2b [Source:ZFIN;Acc:ZDB-GENE-060503-246]
78. bri3bp ENSDARG00000010108 6295 1.527 - - - - - - 0.704 0.823 - bri3 binding protein [Source:ZFIN;Acc:ZDB-GENE-030131-5254]
79. ctnnb1 ENSDARG00000014571 12004 1.525 - - 0.759 - - 0.766 - - - catenin (cadherin-associated protein), beta 1 [Source:ZFIN;Acc:ZDB-GENE-980526-362]
80. atf4b2 atf4b2 4734 1.523 - - - - - - - 0.758 0.765
81. krcp ENSDARG00000040224 5961 1.523 - - - 0.707 - - - - 0.816 kelch repeat-containing protein [Source:ZFIN;Acc:ZDB-GENE-030131-2126]
82. kdm1a ENSDARG00000060679 6152 1.522 - - 0.736 0.786 - - - - - lysine (K)-specific demethylase 1a [Source:ZFIN;Acc:ZDB-GENE-030131-7828]
83. nucks1b ENSDARG00000012777 4468 1.521 - - 0.723 - - - - 0.798 - nuclear casein kinase and cyclin-dependent kinase substrate 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4544]
84. rab5b ENSDARG00000016059, ENSDARG00000114966 1252 1.521 0.745 - - - - - 0.776 - - RAB5B, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-040426-2593]
85. marcksl1b ENSDARG00000035715 37390 1.52 - - - - - - - 0.794 0.726 MARCKS-like 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2315]
86. hnrnpl2 ENSDARG00000059303, ENSDARG00000114431 6633 1.52 - - - - - 0.777 - 0.743 - heterogeneous nuclear ribonucleoprotein L2 [Source:ZFIN;Acc:ZDB-GENE-040426-2707]
87. rbbp6 ENSDARG00000037919 4813 1.512 - - 0.737 - - - 0.775 - - retinoblastoma binding protein 6 [Source:ZFIN;Acc:ZDB-GENE-040930-5]
88. myt1b ENSDARG00000102879 5411 1.51 - - 0.706 0.804 - - - - - myelin transcription factor 1b [Source:ZFIN;Acc:ZDB-GENE-090313-67]
89. pard6a ENSDARG00000069378, ENSDARG00000115700 665 1.509 0.728 - - - - - 0.781 - - par-6 family cell polarity regulator alpha [Source:ZFIN;Acc:ZDB-GENE-070705-215]
90. zfhx4 ENSDARG00000075542 6927 1.508 - - 0.778 - - - - 0.730 - zinc finger homeobox 4 [Source:ZFIN;Acc:ZDB-GENE-070530-3]
91. pias4a ENSDARG00000007081 4264 1.508 - - - - - 0.704 - - 0.804 protein inhibitor of activated STAT, 4a [Source:ZFIN;Acc:ZDB-GENE-040426-2734]
92. tax1bp1b ENSDARG00000056856 4526 1.507 - 0.796 - - - 0.711 - - - Tax1 (human T-cell leukemia virus type I) binding protein 1b [Source:ZFIN;Acc:ZDB-GENE-030131-2872]
93. npas3b npas3b 1446 1.504 - - 0.795 0.709 - - - - -
94. BAZ1A ENSDARG00000063233, ENSDARG00000099745 1432 1.502 - - 0.782 0.720 - - - - - bromodomain adjacent to zinc finger domain, 1A [Source:ZFIN;Acc:ZDB-GENE-030131-6105]
95. BAZ2B BAZ2B 3285 1.501 - - 0.745 - - - - 0.756 -
96. TNRC6A ENSDARG00000079688 14433 1.501 - - 0.786 - - 0.715 - - - trinucleotide repeat containing 6a [Source:ZFIN;Acc:ZDB-GENE-030131-2519]
97. SSBP4 ENSDARG00000056483 5156 1.5 - - 0.799 - 0.701 - - - - single stranded DNA binding protein 4 [Source:ZFIN;Acc:ZDB-GENE-030131-469]
98. C24H17orf96 C24H17orf96 1538 1.499 - - 0.774 - - - - - 0.725
99. wdfy1 ENSDARG00000005425 3628 1.494 0.730 - - - - - - - 0.764 WD repeat and FYVE domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-041024-4]
100. morc2 ENSDARG00000028539 3259 1.494 - - 0.729 - - 0.765 - - - MORC family CW-type zinc finger 2 [Source:ZFIN;Acc:ZDB-GENE-040822-40]

There are 1316 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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