Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for SLC6A4

Gene Name Gene ID Reads Annotation
SLC6A4 ENSGALG00000004246 5 solute carrier family 6 member 4 [Source:NCBI gene;Acc:404747]











Genes with expression patterns similar to SLC6A4

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. SLC6A4 ENSGALG00000004246 5 4 - - 1.000 1.000 - - - 1.000 - 1.000 solute carrier family 6 member 4 [Source:NCBI gene;Acc:404747]
2. SLC6A20 ENSGALG00000039333 1 1.957 - - 0.957 - - - - 1.000 - - solute carrier family 6 member 20 [Source:HGNC Symbol;Acc:HGNC:30927]
3. ADCY7 ENSGALG00000003837 10 1.922 - - 0.922 - - - - 1.000 - - adenylate cyclase 7 [Source:HGNC Symbol;Acc:HGNC:238]
4. NIM1 NIM1 18 1.855 - - 0.855 - - - - 1.000 - -
5. CALCA CALCA 682 1.786 - - - 0.824 - - - 0.962 - -
6. SLC36A4 ENSGALG00000017227 3 1.695 - - 0.957 0.738 - - - - - - solute carrier family 36 member 4 [Source:HGNC Symbol;Acc:HGNC:19660]
7. AMMECR1 ENSGALG00000008074 5 1.65 - - - 0.738 - - - - - 0.912 Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1 [Source:HGNC Symbol;Acc:HGNC:467]
8. MTMR4 ENSGALG00000001042 4 1.639 - - 0.901 0.738 - - - - - - myotubularin related protein 4 [Source:HGNC Symbol;Acc:HGNC:7452]
9. MLC1 ENSGALG00000040038 206 1.54 - - - 0.754 - - - - - 0.786 megalencephalic leukoencephalopathy with subcortical cysts 1 [Source:HGNC Symbol;Acc:HGNC:17082]
10. NDEL1 ENSGALG00000001163 16 1.516 - - 0.737 - - - - - - 0.779 Gallus gallus nudE neurodevelopment protein 1-like 1 (NDEL1), mRNA. [Source:RefSeq mRNA;Acc:NM_001030696]
11. WDR16 WDR16 22 1.506 - - - 0.738 - - - - - 0.768
12. CR1L ENSGALG00000023950 98 1.489 - - - 0.738 - - - - - 0.751 complement C3b/C4b receptor 1 like [Source:NCBI gene;Acc:419853]
13. TMSB10 TMSB10 518 1 - - - - - - - 1.000 - -
14. BCORL1 ENSGALG00000003976 9 1 - - - - - - - 1.000 - - BCL6 corepressor like 1 [Source:HGNC Symbol;Acc:HGNC:25657]
15. COG3 ENSGALG00000016980 15 1 - - - - - - - 1.000 - - component of oligomeric golgi complex 3 [Source:HGNC Symbol;Acc:HGNC:18619]
16. BAFF BAFF 40 1 - - - - - - - 1.000 - -
17. ANKRD31 46 1 - - - - - - - 1.000 - - ankyrin repeat domain 31, transcript variant X2
18. gga-mir-6569 ENSGALG00000026551 10 1 - - - - - - - 1.000 - - gga-mir-6569 [Source:miRBase;Acc:MI0022387]
19. ENSGALG00000028340 ENSGALG00000028340 31 1 - - - - - - - 1.000 - -
20. ZFYVE28 15 1 - - - - - - - 1.000 - - zinc finger FYVE-type containing 28, transcript variant X3
21. ENSGALG00000001138 ENSGALG00000001138 21 1 - - - - - - - 1.000 - -
22. VNN1 ENSGALG00000013993 11 1 - - - - - - - - - 1.000 vanin 1 [Source:NCBI gene;Acc:421702]
23. ENSGALG00000017391 ENSGALG00000017391 12 1 - - - - - - - 1.000 - -
24. ADCK3 ADCK3 110 1 - - - - - - - 1.000 - -
25. SNORA44 SNORA44 29 1 - - - - - - - 1.000 - -
26. CERKL ENSGALG00000008910 70 1 - - - - - - - 1.000 - - ceramide kinase like [Source:HGNC Symbol;Acc:HGNC:21699]
27. GABRG2 ENSGALG00000038042 211 1 - - - - - - - 1.000 - - gamma-aminobutyric acid type A receptor gamma2 subunit [Source:NCBI gene;Acc:396289]
28. HECA ENSGALG00000013824 14 1 - - - - - - - 1.000 - - hdc homolog, cell cycle regulator [Source:HGNC Symbol;Acc:HGNC:21041]
29. gga-mir-218-1 ENSGALG00000018327 3 1 - - - - - - - 1.000 - - gga-mir-218-1 [Source:miRBase;Acc:MI0001212]
30. ENSGALG00000012391 ENSGALG00000012391 0 1 - - - - - - - 1.000 - -
31. B3GALT6 ENSGALG00000001859 5 1 - - - - - - - 1.000 - - beta-1,3-galactosyltransferase 6
32. CCDC181 ENSGALG00000015221 10 1 - - - - - - - 1.000 - - coiled-coil domain containing 181 [Source:HGNC Symbol;Acc:HGNC:28051]
33. GLRA2 ENSGALG00000016571 10 1 - - - - - - - 1.000 - - glycine receptor alpha 2 [Source:HGNC Symbol;Acc:HGNC:4327]
34. RAI1 ENSGALG00000004888 14 1 - - - - - - - 1.000 - - retinoic acid induced 1 [Source:HGNC Symbol;Acc:HGNC:9834]
35. CREB3 ENSGALG00000002523 23 1 - - - - - - - 1.000 - - cAMP responsive element binding protein 3 [Source:HGNC Symbol;Acc:HGNC:2347]
36. ENSGALG00000018621 ENSGALG00000018621 8 1 - - - - - - - 1.000 - -
37. APOD ENSGALG00000006995 2 1 - - - - - - - 1.000 - - apolipoprotein D [Source:NCBI gene;Acc:424893]
38. UPK3B 4 1 - - - - - - - 1.000 - - uroplakin 3B
39. CBLN1 ENSGALG00000042664 15 1 - - - - - - - 1.000 - - cerebellin 1 precursor [Source:HGNC Symbol;Acc:HGNC:1543]
40. ENSGALG00000028964 ENSGALG00000028964 46 1 - - - - - - - 1.000 - -
41. DENND5A ENSGALG00000005840 54 1 - - - - - - - 1.000 - - DENN domain containing 5A [Source:HGNC Symbol;Acc:HGNC:19344]
42. LOC421081 ENSGALG00000015106 0 1 - - - - - - - 1.000 - - uncharacterized LOC421081, transcript variant X1
43. DMGDH ENSGALG00000004491 15 1 - - - - - - - 1.000 - - dimethylglycine dehydrogenase [Source:HGNC Symbol;Acc:HGNC:24475]
44. OCM2 ENSGALG00000003465 74 1 - - - - - - - 1.000 - - oncomodulin 2 [Source:NCBI gene;Acc:396531]
45. GGT5 ENSGALG00000040504 24 1 - - - - - - - 1.000 - - gamma-glutamyltransferase 5 [Source:HGNC Symbol;Acc:HGNC:4260]
46. RFX4 ENSGALG00000012647 119 1 - - - - - - - 1.000 - - regulatory factor X4 [Source:HGNC Symbol;Acc:HGNC:9985]
47. SLC39A12 ENSGALG00000008602 6 1 - - - - - - - 1.000 - - solute carrier family 39 member 12 [Source:HGNC Symbol;Acc:HGNC:20860]
48. PCOLCE2 ENSGALG00000002623 8 1 - - - - - - - - - 1.000 procollagen C-endopeptidase enhancer 2 [Source:HGNC Symbol;Acc:HGNC:8739]
49. KIAA1199 KIAA1199 6 1 - - - - - - - 1.000 - -
50. MAP2K1 ENSGALG00000007687 250 1 - - - - - - - 1.000 - - mitogen-activated protein kinase kinase 1 [Source:NCBI gene;Acc:415549]
51. PPP1R36 ENSGALG00000040026 24 1 - - - - - - - 1.000 - - protein phosphatase 1 regulatory subunit 36 [Source:HGNC Symbol;Acc:HGNC:20097]
52. CERS1 ENSGALG00000003160 3 1 - - - - - - - - - 1.000 ceramide synthase 1 [Source:NCBI gene;Acc:420118]
53. SESN2_1 ENSGALG00000005648, ENSGALG00000037603 2 1 - - - - - - - 1.000 - - sestrin 2 [Source:HGNC Symbol;Acc:HGNC:20746]
54. RAD54L ENSGALG00000010356 7 1 - - - - - - - 1.000 - - RAD54-like (S. cerevisiae) [Source:NCBI gene;Acc:424611]
55. LRP3 ENSGALG00000004853 13 1 - - - - - - - 1.000 - - LDL receptor related protein 3 [Source:HGNC Symbol;Acc:HGNC:6695]
56. ROS1 ENSGALG00000014913 7 1 - - - - - - - 1.000 - - ROS proto-oncogene 1, receptor tyrosine kinase [Source:NCBI gene;Acc:396192]
57. ALG12 ENSGALG00000008539 20 1 - - - - - - - 1.000 - - ALG12, alpha-1,6-mannosyltransferase [Source:NCBI gene;Acc:417733]
58. C14orf159 C14orf159 7 1 - - - - - - - - - 1.000
59. PDCD4 ENSGALG00000008700 574 1 - - - - - - - 1.000 - - programmed cell death 4 [Source:NCBI gene;Acc:374191]
60. DOK6 ENSGALG00000013753 2 1 - - - - - - - 1.000 - - docking protein 6 [Source:HGNC Symbol;Acc:HGNC:28301]
61. LRCH1 ENSGALG00000016990 17 1 - - - - - - - 1.000 - - leucine rich repeats and calponin homology domain containing 1 [Source:HGNC Symbol;Acc:HGNC:20309]
62. RASSF6 ENSGALG00000011664 7 1 - - - - - - - 1.000 - - Ras association domain family member 6 [Source:HGNC Symbol;Acc:HGNC:20796]
63. EPSTI1 ENSGALG00000016964 6 1 - - - - - - - 1.000 - - epithelial stromal interaction 1 [Source:HGNC Symbol;Acc:HGNC:16465]
64. ABCG1 ENSGALG00000016164 10 1 - - - - - - - 1.000 - - ATP binding cassette subfamily G member 1 [Source:HGNC Symbol;Acc:HGNC:73]
65. SKI ENSGALG00000001229 50 1 - - - - - - - 1.000 - - SKI proto-oncogene [Source:NCBI gene;Acc:428181]
66. ENSGALG00000014605 ENSGALG00000014605 1 1 - - - - - - - 1.000 - -
67. ENSGALG00000008047 ENSGALG00000008047 13 1 - - - - - - - 1.000 - -
68. ACKR2 ENSGALG00000005305 0 1 - - - - - - - 1.000 - - atypical chemokine receptor 2 [Source:HGNC Symbol;Acc:HGNC:1565]
69. SEC16B ENSGALG00000004424 4 1 - - - - - - - 1.000 - - SEC16 homolog B, endoplasmic reticulum export factor [Source:NCBI gene;Acc:424431]
70. ENSGALG00000026897 ENSGALG00000026897 6 1 - - - - - - - - - 1.000
71. HCLS1 ENSGALG00000039682 34 1 - - - - - - - - - 1.000 hematopoietic cell-specific Lyn substrate 1 [Source:NCBI gene;Acc:426867]
72. ENSGALG00000029114 ENSGALG00000029114 4 1 - - - - - - - 1.000 - -
73. DNAH14 ENSGALG00000045078 1 1 - - - - - - - 1.000 - - dynein, axonemal, heavy chain 14
74. CCNT2 ENSGALG00000012207 14 1 - - - - - - - 1.000 - - cyclin T2 [Source:HGNC Symbol;Acc:HGNC:1600]
75. IQSEC3 ENSGALG00000012975 4 1 - - - - - - - 1.000 - - IQ motif and Sec7 domain 3, transcript variant X5
76. ENSGALG00000027458 ENSGALG00000027458 2 1 - - - - - - - - - 1.000
77. OTX2 ENSGALG00000034889 8 1 - - - - - - - 1.000 - - orthodenticle homeobox 2 [Source:NCBI gene;Acc:395191]
78. GRM3 ENSGALG00000006576 474 1 - - - - - - - 1.000 - - glutamate metabotropic receptor 3 [Source:HGNC Symbol;Acc:HGNC:4595]
79. RBMS3 ENSGALG00000011439 25 1 - - - - - - - 1.000 - - RNA binding motif single stranded interacting protein 3 [Source:HGNC Symbol;Acc:HGNC:13427]
80. CYBA ENSGALG00000029367 125 1 - - - - - - - 1.000 - - cytochrome b-245 alpha chain [Source:HGNC Symbol;Acc:HGNC:2577]
81. IL12RB1 28 1 - - - - - - - 1.000 - - interleukin 12 receptor subunit beta 1, transcript variant X4
82. CD40 ENSGALG00000007015 7 1 - - - - - - - 1.000 - - CD40 molecule [Source:NCBI gene;Acc:395385]
83. DDTNFR23 ENSGALG00000006407 4 1 - - - - - - - 1.000 - - death domain-containing tumor necrosis factor receptor superfamily member 23 [Source:NCBI gene;Acc:378902]
84. C1H7ORF60 C1H7ORF60 3 1 - - - - - - - 1.000 - -
85. COL15A1 ENSGALG00000034119 9 1 - - - - - - - 1.000 - - collagen type XV alpha 1 chain, transcript variant X6
86. CBX2 ENSGALG00000023338 10 1 - - - - - - - 1.000 - - chromobox 2 [Source:HGNC Symbol;Acc:HGNC:1552]
87. SLC6A11 ENSGALG00000004879 16 1 - - - - - - - 1.000 - - solute carrier family 6 member 11 [Source:HGNC Symbol;Acc:HGNC:11044]
88. SOX8 ENSGALG00000005263 218 1 - - - - - - - 1.000 - - SRY-box 8 [Source:NCBI gene;Acc:395483]
89. SH3GL3 ENSGALG00000006045 12 1 - - - - - - - 1.000 - - SH3 domain containing GRB2 like 3, endophilin A3 [Source:NCBI gene;Acc:395201]
90. SLC20A1 ENSGALG00000013740 40 1 - - - - - - - 1.000 - - solute carrier family 20 member 1 [Source:HGNC Symbol;Acc:HGNC:10946]
91. HK3 ENSGALG00000027287 20 1 - - - - - - - 1.000 - - hexokinase 3, transcript variant X3
92. TANC2 26 1 - - - - - - - 1.000 - - tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2, transcript variant X14
93. ING1 ENSGALG00000016849 89 1 - - - - - - - 1.000 - - inhibitor of growth family member 1 [Source:HGNC Symbol;Acc:HGNC:6062]
94. SPIDR SPIDR 19 1 - - - - - - - 1.000 - -
95. SLC38A10 ENSGALG00000006880 34 1 - - - - - - - 1.000 - - solute carrier family 38 member 10 [Source:HGNC Symbol;Acc:HGNC:28237]
96. COL4A3 ENSGALG00000038612 41 1 - - - - - - - 1.000 - - collagen type IV alpha 3 chain [Source:HGNC Symbol;Acc:HGNC:2204]
97. NPBWR1 ENSGALG00000015261 6 1 - - - - - - - 1.000 - - Gallus gallus neuropeptides B/W receptor 1 (NPBWR1), mRNA. [Source:RefSeq mRNA;Acc:NM_001327793]
98. ADCY1 ENSGALG00000031170 4 1 - - - - - - - 1.000 - - adenylate cyclase 1 [Source:HGNC Symbol;Acc:HGNC:232]
99. MYO19 9 1 - - - - - - - - - 1.000 myosin XIX, transcript variant X5
100. OSBPL3 ENSGALG00000011007 23 1 - - - - - - - 1.000 - - oxysterol binding protein like 3 [Source:HGNC Symbol;Acc:HGNC:16370]

There are 297 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA