Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for SLC1A3

Gene Name Gene ID Reads Annotation
SLC1A3 ENSGALG00000003582 2283 solute carrier family 1 member 3 [Source:HGNC Symbol;Acc:HGNC:10941]











Genes with expression patterns similar to SLC1A3

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. SLC1A3 ENSGALG00000003582 2283 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 solute carrier family 1 member 3 [Source:HGNC Symbol;Acc:HGNC:10941]
2. HES5 ENSGALG00000001141 6514 2.257 - - - 0.734 - 0.813 0.710 - - - hes family bHLH transcription factor 5 [Source:NCBI gene;Acc:419392]
3. CHL1 ENSGALG00000037856 1565 1.648 - - - 0.871 - 0.777 - - - - cell adhesion molecule L1 like [Source:HGNC Symbol;Acc:HGNC:1939]
4. CRABP-I ENSGALG00000003193 67258 1.595 - - - 0.770 - 0.825 - - - - cellular retinoic acid binding protein 1 [Source:NCBI gene;Acc:374211]
5. NFASC ENSGALG00000031776 4264 1.538 - - - 0.705 0.833 - - - - - neurofascin [Source:NCBI gene;Acc:419824]
6. VIP ENSGALG00000013604 153 1.531 - - - - - 0.792 - 0.739 - - vasoactive intestinal peptide [Source:NCBI gene;Acc:396323]
7. PRTG ENSGALG00000037336 34665 1.524 - - - 0.788 - - 0.736 - - - protogenin [Source:NCBI gene;Acc:415407]
8. IRX1 ENSGALG00000030991 1474 1.492 - - - - - 0.701 0.791 - - - iroquois homeobox 1 [Source:NCBI gene;Acc:374185]
9. CERCAM ENSGALG00000004986 5158 1.492 - - 0.713 - - 0.779 - - - - cerebral endothelial cell adhesion molecule [Source:HGNC Symbol;Acc:HGNC:23723]
10. CHGA ENSGALG00000010820 1028 1.491 - - - - - 0.714 0.777 - - - chromogranin A [Source:HGNC Symbol;Acc:HGNC:1929]
11. ZIC1 ENSGALG00000040532 6543 1.487 - - - 0.728 - 0.759 - - - - Zic family member 1 [Source:NCBI gene;Acc:374103]
12. NRCAM ENSGALG00000009514 490 1.429 - - - 0.711 - 0.718 - - - - neuronal cell adhesion molecule [Source:NCBI gene;Acc:396202]
13. FAM53A ENSGALG00000015713 3795 0.989 - - - - 0.989 - - - - - family with sequence similarity 53 member A [Source:NCBI gene;Acc:378905]
14. USP10 ENSGALG00000005674 7768 0.983 - - - - 0.983 - - - - - ubiquitin specific peptidase 10 [Source:NCBI gene;Acc:415817]
15. ARID4B ENSGALG00000034003 5364 0.981 - - - - 0.981 - - - - - AT-rich interaction domain 4B [Source:HGNC Symbol;Acc:HGNC:15550]
16. CEP70 ENSGALG00000012087 7992 0.981 - - - - 0.981 - - - - - centrosomal protein 70 [Source:HGNC Symbol;Acc:HGNC:29972]
17. BTG1 ENSGALG00000011276 17496 0.975 - - - - 0.975 - - - - - BTG anti-proliferation factor 1 [Source:NCBI gene;Acc:396295]
18. DDX18 ENSGALG00000012147 12463 0.97 - - - - 0.970 - - - - - DEAD-box helicase 18 [Source:HGNC Symbol;Acc:HGNC:2741]
19. NUDC ENSGALG00000000895 17844 0.962 - - - - 0.962 - - - - - nuclear distribution C, dynein complex regulator [Source:NCBI gene;Acc:419578]
20. DENND5B 4077 0.893 - - - - - - 0.893 - - - DENN domain containing 5B, transcript variant X1
21. NSA2 ENSGALG00000014942 45193 0.856 - - - - 0.856 - - - - - NSA2, ribosome biogenesis homolog [Source:NCBI gene;Acc:427206]
22. RPS17 ENSGALG00000002157 142120 0.842 - - - - 0.842 - - - - - ribosomal protein S17 [Source:NCBI gene;Acc:374053]
23. SIAH3 ENSGALG00000026849 384 0.833 - - - - - - - 0.833 - - siah E3 ubiquitin protein ligase family member 3 [Source:HGNC Symbol;Acc:HGNC:30553]
24. CTSZ ENSGALG00000007462 630 0.829 - - - - 0.829 - - - - - cathepsin Z [Source:HGNC Symbol;Acc:HGNC:2547]
25. IGF1R ENSGALG00000040651 772 0.829 - - - - 0.829 - - - - - insulin like growth factor 1 receptor [Source:NCBI gene;Acc:395889]
26. ELL2 ENSGALG00000014678 1111 0.828 - - - - 0.828 - - - - - elongation factor for RNA polymerase II 2 [Source:HGNC Symbol;Acc:HGNC:17064]
27. SSPN ENSGALG00000014042 638 0.828 - - - - 0.828 - - - - - sarcospan [Source:HGNC Symbol;Acc:HGNC:11322]
28. ENSGALG00000011687 ENSGALG00000011687 4553 0.827 - - - - 0.827 - - - - -
29. XPO7 ENSGALG00000001838 1875 0.827 - - - - 0.827 - - - - - exportin 7 [Source:NCBI gene;Acc:426925]
30. CPZ ENSGALG00000030209 8822 0.827 - - - - 0.827 - - - - - carboxypeptidase Z [Source:NCBI gene;Acc:395266]
31. DDX55 ENSGALG00000003298 2315 0.827 - - - - 0.827 - - - - - DEAD-box helicase 55 [Source:NCBI gene;Acc:416820]
32. ZBTB10 ENSGALG00000034376 3271 0.826 - - - - 0.826 - - - - - zinc finger and BTB domain containing 10 [Source:HGNC Symbol;Acc:HGNC:30953]
33. EAPP ENSGALG00000010007 5080 0.826 - - - - 0.826 - - - - - E2F associated phosphoprotein [Source:NCBI gene;Acc:423319]
34. REST 2394 0.825 - - - - 0.825 - - - - - RE1 silencing transcription factor
35. TCP11L1 ENSGALG00000011688 2427 0.824 - - - - 0.824 - - - - - t-complex 11 like 1 [Source:NCBI gene;Acc:421594]
36. DCT ENSGALG00000016899 37 0.823 - - - - - - - 0.823 - - dopachrome tautomerase [Source:NCBI gene;Acc:395775]
37. DRAXIN ENSGALG00000004631 3122 0.822 - - - - 0.822 - - - - - dorsal inhibitory axon guidance protein [Source:NCBI gene;Acc:419492]
38. DNAJC12 ENSGALG00000002769 1418 0.822 - - - - 0.822 - - - - - DnaJ heat shock protein family (Hsp40) member C12 [Source:NCBI gene;Acc:423647]
39. KNOP1 ENSGALG00000002042 6251 0.821 - - - - 0.821 - - - - - lysine-rich nucleolar protein 1, transcript variant X1
40. MRPS27 ENSGALG00000015002 6541 0.82 - - - - 0.820 - - - - - mitochondrial ribosomal protein S27 [Source:HGNC Symbol;Acc:HGNC:14512]
41. TRAPPC12 ENSGALG00000016387 2593 0.82 - - - - 0.820 - - - - - trafficking protein particle complex 12 [Source:HGNC Symbol;Acc:HGNC:24284]
42. CBWD1 ENSGALG00000010147 2765 0.819 - - - - 0.819 - - - - - COBW domain containing 1 [Source:NCBI gene;Acc:427347]
43. NAP1L1 ENSGALG00000010238 14506 0.819 - - - - 0.819 - - - - - nucleosome assembly protein 1 like 1 [Source:HGNC Symbol;Acc:HGNC:7637]
44. NXN 20202 0.818 - - - - 0.818 - - - - - nucleoredoxin, transcript variant X1
45. TLCD1 ENSGALG00000003973 17569 0.818 - - - - 0.818 - - - - - TLC domain containing 1 [Source:NCBI gene;Acc:417575]
46. BAG4 ENSGALG00000003254 5751 0.817 - - - - 0.817 - - - - - BCL2 associated athanogene 4 [Source:HGNC Symbol;Acc:HGNC:940]
47. COIL ENSGALG00000003158 7806 0.817 - - - - 0.817 - - - - - coilin [Source:HGNC Symbol;Acc:HGNC:2184]
48. YY1 ENSGALG00000017388 1933 0.816 - - - - 0.816 - - - - - YY1 transcription factor [Source:NCBI gene;Acc:423455]
49. RABEP1 ENSGALG00000001737 2650 0.815 - - - - 0.815 - - - - - rabaptin, RAB GTPase binding effector protein 1 [Source:NCBI gene;Acc:395930]
50. CZH9ORF41 CZH9ORF41 3492 0.814 - - - - 0.814 - - - - -
51. POLR2B ENSGALG00000011387 4864 0.813 - - - - 0.813 - - - - - RNA polymerase II subunit B [Source:NCBI gene;Acc:422621]
52. FERMT2 ENSGALG00000012425 5480 0.813 - - - - 0.813 - - - - - fermitin family member 2 [Source:HGNC Symbol;Acc:HGNC:15767]
53. WDR82 ENSGALG00000025904 4783 0.813 - - - - 0.813 - - - - - WD repeat domain 82 [Source:NCBI gene;Acc:415942]
54. FAT4 ENSGALG00000011823 774 0.813 - - - - - - - 0.813 - - FAT atypical cadherin 4 [Source:HGNC Symbol;Acc:HGNC:23109]
55. PARVB ENSGALG00000014201 27559 0.812 - - - - 0.812 - - - - - parvin beta [Source:HGNC Symbol;Acc:HGNC:14653]
56. ATG5 ENSGALG00000015387 7752 0.812 - - - - 0.812 - - - - - autophagy related 5 [Source:NCBI gene;Acc:421784]
57. COMMD8 ENSGALG00000026279 13509 0.811 - - - - 0.811 - - - - - COMM domain containing 8 [Source:NCBI gene;Acc:422769]
58. TLK2 ENSGALG00000000410 4690 0.811 - - - - 0.811 - - - - - tousled like kinase 2 [Source:HGNC Symbol;Acc:HGNC:11842]
59. POLR3F ENSGALG00000008749 5645 0.81 - - - - 0.810 - - - - - RNA polymerase III subunit F [Source:NCBI gene;Acc:416723]
60. SSR2 ENSGALG00000000764 32190 0.81 - - - - 0.810 - - - - - signal sequence receptor subunit 2 [Source:NCBI gene;Acc:425656]
61. SIRT1 ENSGALG00000002761 9028 0.809 - - - - 0.809 - - - - - sirtuin 1 [Source:NCBI gene;Acc:423646]
62. IGBP1 ENSGALG00000044628 9200 0.807 - - - - 0.807 - - - - - immunoglobulin (CD79A) binding protein 1, transcript variant X3
63. LATS2 4776 0.806 - - - - 0.806 - - - - - large tumor suppressor kinase 2
64. CSNK1G1 ENSGALG00000030812 31618 0.806 - - - - 0.806 - - - - - casein kinase 1 gamma 1 [Source:NCBI gene;Acc:415328]
65. CDC42SE2 ENSGALG00000027258 4725 0.805 - - - - 0.805 - - - - - CDC42 small effector 2 [Source:NCBI gene;Acc:768825]
66. STK3 ENSGALG00000032850 6339 0.805 - - - - 0.805 - - - - - serine/threonine kinase 3 [Source:NCBI gene;Acc:425375]
67. TK2 ENSGALG00000034216 5394 0.805 - - - - 0.805 - - - - - thymidine kinase 2, mitochondrial [Source:NCBI gene;Acc:427551]
68. SHROOM2 ENSGALG00000030802 4517 0.805 - - - - 0.805 - - - - - shroom family member 2 [Source:HGNC Symbol;Acc:HGNC:630]
69. DEPDC5 ENSGALG00000006766 1592 0.804 - - - - - - - 0.804 - - DEP domain containing 5, transcript variant X6
70. MKI67 ENSGALG00000025996 28136 0.803 - - - - 0.803 - - - - - marker of proliferation Ki-67, transcript variant X3
71. PUM1 ENSGALG00000042598 9392 0.803 - - - - 0.803 - - - - - pumilio RNA binding family member 1 [Source:NCBI gene;Acc:419554]
72. AATF ENSGALG00000005420 6501 0.802 - - - - 0.802 - - - - - apoptosis antagonizing transcription factor [Source:NCBI gene;Acc:417653]
73. TMEM165 ENSGALG00000027886 5468 0.801 - - - - 0.801 - - - - - transmembrane protein 165 [Source:HGNC Symbol;Acc:HGNC:30760]
74. MRPL23 ENSGALG00000006561 13737 0.798 - - - - 0.798 - - - - - mitochondrial ribosomal protein L23 [Source:NCBI gene;Acc:374255]
75. PLAA ENSGALG00000001782 5459 0.796 - - - - 0.796 - - - - - phospholipase A2 activating protein [Source:HGNC Symbol;Acc:HGNC:9043]
76. MRPS25 ENSGALG00000008506 12131 0.795 - - - - 0.795 - - - - - mitochondrial ribosomal protein S25 [Source:NCBI gene;Acc:416129]
77. FH ENSGALG00000013165 13669 0.795 - - - - 0.795 - - - - - fumarate hydratase [Source:NCBI gene;Acc:420969]
78. ATPBD4 ATPBD4 1823 0.794 - - - - - - - 0.794 - -
79. GPN3 ENSGALG00000003807 6320 0.794 - - - - 0.794 - - - - - GPN-loop GTPase 3 [Source:HGNC Symbol;Acc:HGNC:30186]
80. FBXO9 ENSGALG00000016320 9600 0.793 - - - - 0.793 - - - - - F-box protein 9 [Source:NCBI gene;Acc:421895]
81. SH2D3C ENSGALG00000005036 5101 0.793 - - - - 0.793 - - - - - SH2 domain containing 3C [Source:HGNC Symbol;Acc:HGNC:16884]
82. HAGH ENSGALG00000005398 168 0.791 - - - - - - - 0.791 - - hydroxyacylglutathione hydrolase [Source:NCBI gene;Acc:416537]
83. SALL1 ENSGALG00000039238 3740 0.789 - - - 0.789 - - - - - - spalt like transcription factor 1 [Source:NCBI gene;Acc:395446]
84. MYL4 ENSGALG00000000585 16982 0.789 - - - - - 0.789 - - - - myosin, light chain 4, alkali; atrial, embryonic [Source:NCBI gene;Acc:396472]
85. NCAM1 ENSGALG00000007839 19929 0.789 - - - 0.789 - - - - - - Gallus gallus neural cell adhesion molecule 1 (NCAM1), transcript variant 2, mRNA. [Source:RefSeq mRNA;Acc:NM_001242604]
86. PSPC1 ENSGALG00000017142 13036 0.788 - - - - 0.788 - - - - - paraspeckle component 1 [Source:NCBI gene;Acc:418955]
87. REEP5 ENSGALG00000023157 6282 0.788 - - - - 0.788 - - - - - receptor accessory protein 5 [Source:NCBI gene;Acc:770021]
88. AMT ENSGALG00000025844 4465 0.788 - - - - - - - 0.788 - - aminomethyltransferase [Source:NCBI gene;Acc:395566]
89. TIRAP ENSGALG00000040224 2578 0.786 - - - - - - - 0.786 - - TIR domain containing adaptor protein [Source:NCBI gene;Acc:419715]
90. CDC42 ENSGALG00000004796 59878 0.786 - - - - 0.786 - - - - - cell division cycle 42 [Source:NCBI gene;Acc:395917]
91. LDLRAD1 ENSGALG00000020647 128 0.786 - - - - - - - 0.786 - - low density lipoprotein receptor class A domain containing 1 [Source:HGNC Symbol;Acc:HGNC:32069]
92. SAR1B ENSGALG00000038753 6493 0.785 - - - - 0.785 - - - - - secretion associated Ras related GTPase 1B [Source:NCBI gene;Acc:416314]
93. CXCR4 ENSGALG00000012357 1320 0.785 - - - - - - 0.785 - - - C-X-C motif chemokine receptor 4 [Source:NCBI gene;Acc:395324]
94. TBC1D22A ENSGALG00000043058 1614 0.785 - - - - - - - 0.785 - - TBC1 domain family member 22A [Source:NCBI gene;Acc:428128]
95. CP ENSGALG00000030773 119 0.783 - - - - - - - 0.783 - - ceruloplasmin [Source:HGNC Symbol;Acc:HGNC:2295]
96. IGDCC4 ENSGALG00000007410 5457 0.781 - - - - 0.781 - - - - - immunoglobulin superfamily DCC subclass member 4 [Source:HGNC Symbol;Acc:HGNC:13770]
97. SFSWAP ENSGALG00000002487 9977 0.781 - - - - 0.781 - - - - - splicing factor SWAP [Source:HGNC Symbol;Acc:HGNC:10790]
98. CKB ENSGALG00000011511 2100 0.781 - - - - - 0.781 - - - - creatine kinase B [Source:NCBI gene;Acc:396248]
99. NOP58 ENSGALG00000008454 34630 0.779 - - - - 0.779 - - - - - NOP58 ribonucleoprotein [Source:HGNC Symbol;Acc:HGNC:29926]
100. PTPRZ1 ENSGALG00000040114 3410 0.779 - - - - - 0.779 - - - - protein tyrosine phosphatase, receptor type Z1 [Source:NCBI gene;Acc:396403]

There are 142 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA