Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for SHROOM3

Gene Name Gene ID Reads Annotation
SHROOM3 ENSDARG00000102180 419 shroom family member 3 [Source:ZFIN;Acc:ZDB-GENE-120817-1]










Genes with expression patterns similar to SHROOM3

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. SHROOM3 ENSDARG00000102180 419 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 shroom family member 3 [Source:ZFIN;Acc:ZDB-GENE-120817-1]
2. WDR89 ENSDARG00000077265 322 1.648 - 0.880 - 0.768 - - - - - WD repeat domain 89 [Source:ZFIN;Acc:ZDB-GENE-090319-3]
3. srrm2 ENSDARG00000037965 1967 1.624 - 0.757 - 0.867 - - - - - serine/arginine repetitive matrix 2 [Source:ZFIN;Acc:ZDB-GENE-050522-399]
4. txnl1 ENSDARG00000011921 692 1.589 - - - 0.750 - - 0.839 - - thioredoxin-like 1 [Source:ZFIN;Acc:ZDB-GENE-040426-701]
5. far1 ENSDARG00000006899 204 1.554 - - - 0.766 - 0.788 - - - fatty acyl CoA reductase 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2908]
6. stx16 ENSDARG00000003307, ENSDARG00000112974 487 1.536 0.806 - - - - 0.730 - - - syntaxin 16 [Source:ZFIN;Acc:ZDB-GENE-060810-113]
7. CU633775.1 ENSDARG00000113543 319 1.435 - - - 0.734 - 0.701 - - -
8. ptk7a ENSDARG00000011863 450 1.435 0.719 0.716 - - - - - - - protein tyrosine kinase 7a [Source:ZFIN;Acc:ZDB-GENE-050522-216]
9. specc1lb ENSDARG00000042232 640 1.434 0.707 - - - - - 0.727 - - sperm antigen with calponin homology and coiled-coil domains 1-like b [Source:ZFIN;Acc:ZDB-GENE-090423-1]
10. iqcb1 ENSDARG00000101032 310 1.431 - - - 0.723 - 0.708 - - - IQ motif containing B1 [Source:ZFIN;Acc:ZDB-GENE-041212-47]
11. CABIN1 ENSDARG00000079326 905 1.414 0.705 - - 0.709 - - - - - calcineurin binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-1735]
12. kazald2 ENSDARG00000078518 3062 0.949 0.949 - - - - - - - - Kazal-type serine peptidase inhibitor domain 2 [Source:ZFIN;Acc:ZDB-GENE-070928-14]
13. tmem41aa ENSDARG00000070028 248 0.937 0.937 - - - - - - - - transmembrane protein 41aa [Source:ZFIN;Acc:ZDB-GENE-050522-53]
14. kctd16b ENSDARG00000020102 83 0.931 0.931 - - - - - - - - potassium channel tetramerization domain containing 16b [Source:ZFIN;Acc:ZDB-GENE-060117-2]
15. adam17b ENSDARG00000093093 792 0.93 - 0.930 - - - - - - - ADAM metallopeptidase domain 17b [Source:ZFIN;Acc:ZDB-GENE-041001-199]
16. hnf1a ENSDARG00000009470 60 0.912 0.912 - - - - - - - - HNF1 homeobox a [Source:ZFIN;Acc:ZDB-GENE-021206-12]
17. pnpla2 ENSDARG00000089390 129 0.911 0.911 - - - - - - - - patatin-like phospholipase domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-120913-3]
18. rab27a ENSDARG00000103935 1173 0.909 0.909 - - - - - - - - RAB27A, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-050913-46]
19. mylipb ENSDARG00000055118 144 0.904 0.904 - - - - - - - - myosin regulatory light chain interacting protein b [Source:ZFIN;Acc:ZDB-GENE-061027-67]
20. ZNRF4 ZNRF4 16 0.897 0.897 - - - - - - - -
21. ngf ngf 278 0.891 - - - - - - 0.891 - -
22. SHC3 ENSDARG00000098909 332 0.885 - - - 0.885 - - - - - SHC adaptor protein 3 [Source:HGNC Symbol;Acc:HGNC:18181]
23. erp44 ENSDARG00000019008 231 0.88 - - - - - 0.880 - - - endoplasmic reticulum protein 44 [Source:ZFIN;Acc:ZDB-GENE-040426-1902]
24. sorbs2a ENSDARG00000003046 242 0.88 - - - 0.880 - - - - - sorbin and SH3 domain containing 2a [Source:ZFIN;Acc:ZDB-GENE-070308-2]
25. GK2 GK2 813 0.876 0.876 - - - - - - - -
26. mrpl44 ENSDARG00000094277 1778 0.872 - - - 0.872 - - - - - mitochondrial ribosomal protein L44 [Source:ZFIN;Acc:ZDB-GENE-050913-59]
27. pex16 ENSDARG00000058202 486 0.871 - - - 0.871 - - - - - peroxisomal biogenesis factor 16 [Source:ZFIN;Acc:ZDB-GENE-050626-49]
28. snx17 ENSDARG00000091418 781 0.867 0.867 - - - - - - - - sorting nexin 17 [Source:ZFIN;Acc:ZDB-GENE-030131-9475]
29. dnajb6b ENSDARG00000020953, ENSDARG00000110048 446 0.867 0.867 - - - - - - - - DnaJ (Hsp40) homolog, subfamily B, member 6b [Source:ZFIN;Acc:ZDB-GENE-040426-1122]
30. si:ch73-22b20.4 si:ch73-22b20.4 283 0.864 - 0.864 - - - - - - -
31. inip ENSDARG00000028523 1925 0.862 - - - 0.862 - - - - - ints3 and nabp interacting protein [Source:ZFIN;Acc:ZDB-GENE-040426-961]
32. gnptg ENSDARG00000038566 259 0.856 - - - - - 0.856 - - - N-acetylglucosamine-1-phosphate transferase subunit gamma [Source:ZFIN;Acc:ZDB-GENE-040625-18]
33. si:ch211-179l5.5 si:ch211-179l5.5 249 0.854 0.854 - - - - - - - -
34. rufy2 ENSDARG00000062019, ENSDARG00000116213, ENSDARG00000116286 409 0.852 - 0.852 - - - - - - - RUN and FYVE domain containing 2 [Source:ZFIN;Acc:ZDB-GENE-070424-66]
35. smdt1 smdt1 99 0.85 - - - - - 0.850 - - -
36. kbtbd4 ENSDARG00000069271, ENSDARG00000109347 253 0.848 - - - - - 0.848 - - - kelch repeat and BTB (POZ) domain containing 4 [Source:ZFIN;Acc:ZDB-GENE-040426-937]
37. si:dkey-238o14.9 si:dkey-238o14.9 303 0.846 - - - - - 0.846 - - -
38. CU929378.1 CU929378.1 514 0.846 0.846 - - - - - - - -
39. cbx6a ENSDARG00000071051 379 0.845 0.845 - - - - - - - - chromobox homolog 6a [Source:ZFIN;Acc:ZDB-GENE-040808-26]
40. adprhl2 ENSDARG00000019338, ENSDARG00000110712 652 0.843 0.843 - - - - - - - - ADP-ribosylhydrolase like 2 [Source:ZFIN;Acc:ZDB-GENE-040912-85]
41. atp6v0a1b ENSDARG00000015174 1052 0.842 - - - 0.842 - - - - - ATPase H+ transporting V0 subunit a1b [Source:ZFIN;Acc:ZDB-GENE-050522-215]
42. nck2b ENSDARG00000043361 908 0.842 - - - 0.842 - - - - - NCK adaptor protein 2b [Source:ZFIN;Acc:ZDB-GENE-040801-235]
43. drd1b ENSDARG00000038918 113 0.841 - 0.841 - - - - - - - dopamine receptor D1b [Source:ZFIN;Acc:ZDB-GENE-070524-2]
44. naca ENSDARG00000005513 2745 0.841 - - - - - 0.841 - - - nascent polypeptide associated complex subunit alpha [Source:ZFIN;Acc:ZDB-GENE-020423-4]
45. si:dkey-81n9.2 si:dkey-81n9.2 188 0.84 - - - - - 0.840 - - -
46. si:ch211-266k8.3 si:ch211-266k8.3 250 0.84 - - - - - - 0.840 - -
47. lrrc58b ENSDARG00000063509 1357 0.84 - - - 0.840 - - - - - leucine rich repeat containing 58b [Source:ZFIN;Acc:ZDB-GENE-050309-29]
48. supt4h1 ENSDARG00000113969 1024 0.838 - - - 0.838 - - - - - SPT4 homolog, DSIF elongation factor subunit [Source:ZFIN;Acc:ZDB-GENE-040718-214]
49. gfm2 ENSDARG00000005561 302 0.833 - - - - - 0.833 - - - G elongation factor, mitochondrial 2 [Source:ZFIN;Acc:ZDB-GENE-060201-3]
50. si:dkey-163m14.7 65 0.832 - - - - - 0.832 - - - si:dkey-163m14.7
51. ik ENSDARG00000004161 3132 0.831 - - - 0.831 - - - - - IK cytokine [Source:ZFIN;Acc:ZDB-GENE-030131-960]
52. myo5aa ENSDARG00000061635, ENSDARG00000116722 280 0.831 - - - - - 0.831 - - - myosin VAa [Source:ZFIN;Acc:ZDB-GENE-041027-2]
53. CR548626.3 CR548626.3 423 0.831 - - - 0.831 - - - - -
54. zgc:77880 ENSDARG00000030563 208 0.829 - - - - - - 0.829 - - zgc:77880 [Source:ZFIN;Acc:ZDB-GENE-040426-1901]
55. tex9 ENSDARG00000010586 155 0.829 - 0.829 - - - - - - - testis expressed 9 [Source:ZFIN;Acc:ZDB-GENE-110623-3]
56. tdp2b ENSDARG00000035954, ENSDARG00000109349 478 0.829 - - - 0.829 - - - - - tyrosyl-DNA phosphodiesterase 2b [Source:ZFIN;Acc:ZDB-GENE-050816-1]
57. SV2A ENSDARG00000059945 1278 0.828 - - - 0.828 - - - - - synaptic vesicle glycoprotein 2A [Source:ZFIN;Acc:ZDB-GENE-131001-1]
58. gtpbp1 ENSDARG00000053467 1786 0.828 - - - 0.828 - - - - - GTP binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-030909-12]
59. efnb2b_1 ENSDARG00000074050 1094 0.827 - - - 0.827 - - - - - ephrin-B2b [Source:ZFIN;Acc:ZDB-GENE-010618-1]
60. ftr24 ENSDARG00000008396, ENSDARG00000112253 1652 0.827 - - - - - - 0.827 - - finTRIM family, member 24 [Source:ZFIN;Acc:ZDB-GENE-050731-2]
61. noa1 ENSDARG00000102934 66 0.826 - - - - - 0.826 - - - nitric oxide associated 1 [Source:ZFIN;Acc:ZDB-GENE-080220-18]
62. mios ENSDARG00000102587 684 0.826 - - - - - - 0.826 - - missing oocyte, meiosis regulator, homolog (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-040426-856]
63. aldh5a1 ENSDARG00000076544, ENSDARG00000113300 1021 0.825 - - - 0.825 - - - - - aldehyde dehydrogenase 5 family, member A1 (succinate-semialdehyde dehydrogenase) [Source:ZFIN;Acc:ZDB-GENE-070228-2]
64. CABZ01059415.2 CABZ01059415.2 195 0.825 - - - - - 0.825 - - -
65. b4galt4 ENSDARG00000104042 1479 0.825 - 0.825 - - - - - - - UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 4 [Source:ZFIN;Acc:ZDB-GENE-041114-103]
66. CR457447.1 ENSDARG00000097243 693 0.823 - - - 0.823 - - - - - uncharacterized LOC110437905 [Source:NCBI gene;Acc:110437905]
67. ephb3a ENSDARG00000031548 1872 0.823 - - - 0.823 - - - - - eph receptor B3a [Source:ZFIN;Acc:ZDB-GENE-990415-60]
68. atp6v0a2b ENSDARG00000035565, ENSDARG00000113695 785 0.821 - - - - - 0.821 - - - ATPase H+ transporting V0 subunit a2b [Source:ZFIN;Acc:ZDB-GENE-060526-4]
69. ncaldb ENSDARG00000011334 123 0.819 - 0.819 - - - - - - - neurocalcin delta b [Source:ZFIN;Acc:ZDB-GENE-040808-37]
70. rhogc ENSDARG00000028401 2671 0.818 - - - 0.818 - - - - - ras homolog gene family, member Gc [Source:ZFIN;Acc:ZDB-GENE-030131-3402]
71. si:dkey-46m10.3 si:dkey-46m10.3 246 0.816 0.816 - - - - - - - -
72. uchl5 ENSDARG00000103404, ENSDARG00000110434 4029 0.814 - - - 0.814 - - - - - ubiquitin carboxyl-terminal hydrolase L5 [Source:ZFIN;Acc:ZDB-GENE-040426-2051]
73. lrrc8a lrrc8a 674 0.813 0.813 - - - - - - - -
74. si:dkey-246i21.1 197 0.813 - - - - - 0.813 - - - si:dkey-246i21.1, transcript variant X2
75. zfyve16 ENSDARG00000075747 62 0.812 - 0.812 - - - - - - - zinc finger, FYVE domain containing 16 [Source:ZFIN;Acc:ZDB-GENE-091116-62]
76. nek6 ENSDARG00000037963 316 0.811 - - - 0.811 - - - - - NIMA-related kinase 6 [Source:ZFIN;Acc:ZDB-GENE-040724-133]
77. dnajc18 ENSDARG00000056005 8084 0.81 - - - 0.810 - - - - - DnaJ (Hsp40) homolog, subfamily C, member 18 [Source:ZFIN;Acc:ZDB-GENE-030131-8019]
78. exosc2 ENSDARG00000028688 726 0.81 - - - - - 0.810 - - - exosome component 2 [Source:ZFIN;Acc:ZDB-GENE-050417-27]
79. CABZ01102039.1 ENSDARG00000076357 273 0.81 - 0.810 - - - - - - -
80. sept7b ENSDARG00000052673 432 0.81 - - - - - 0.810 - - - septin 7b [Source:ZFIN;Acc:ZDB-GENE-030131-37]
81. zgc:193742 ENSDARG00000092387, ENSDARG00000115140, ENSDARG00000116906 653 0.81 - - - - - - 0.810 - - zgc:193742 [Source:ZFIN;Acc:ZDB-GENE-081022-37]
82. waca ENSDARG00000012577 1794 0.809 - - - 0.809 - - - - - WW domain containing adaptor with coiled-coil a [Source:ZFIN;Acc:ZDB-GENE-030131-2624]
83. zfand1 ENSDARG00000009178, ENSDARG00000114617 1192 0.809 - - - 0.809 - - - - - zinc finger, AN1-type domain 1 [Source:ZFIN;Acc:ZDB-GENE-040801-269]
84. rab14_1 ENSDARG00000074246 481 0.809 0.809 - - - - - - - - RAB14, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-030826-20]
85. atxn7l3 ENSDARG00000029331 531 0.808 - - - 0.808 - - - - - ataxin 7-like 3 [Source:ZFIN;Acc:ZDB-GENE-030616-253]
86. WIPF3 WIPF3 804 0.808 - - - - - 0.808 - - -
87. cmyb cmyb 274 0.808 - 0.808 - - - - - - -
88. ubl3a ENSDARG00000099532, ENSDARG00000113955 3475 0.806 0.806 - - - - - - - - ubiquitin-like 3a [Source:ZFIN;Acc:ZDB-GENE-030131-3431]
89. eif4a2 ENSDARG00000016477 665 0.806 - - - - - 0.806 - - - eukaryotic translation initiation factor 4A, isoform 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2802]
90. CDK5RAP1 ENSDARG00000044925, ENSDARG00000110547, ENSDARG00000112362 390 0.805 - - - 0.805 - - - - - CDK5 regulatory subunit associated protein 1 [Source:ZFIN;Acc:ZDB-GENE-070424-90]
91. maf1 ENSDARG00000013122 3365 0.805 - - - 0.805 - - - - - MAF1 homolog, negative regulator of RNA polymerase III [Source:ZFIN;Acc:ZDB-GENE-040426-2788]
92. eif3jb ENSDARG00000053370 1776 0.804 - - - - - 0.804 - - - eukaryotic translation initiation factor 3, subunit Jb [Source:ZFIN;Acc:ZDB-GENE-040426-2900]
93. taf11 ENSDARG00000037855 2624 0.804 - - - 0.804 - - - - - TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor [Source:ZFIN;Acc:ZDB-GENE-040718-283]
94. trub1 ENSDARG00000053805 202 0.802 - - - - - 0.802 - - - TruB pseudouridine (psi) synthase family member 1 [Source:ZFIN;Acc:ZDB-GENE-080723-73]
95. ccdc93 ENSDARG00000040678 1131 0.801 - 0.801 - - - - - - - coiled-coil domain containing 93 [Source:ZFIN;Acc:ZDB-GENE-060421-8315]
96. tspan13a ENSDARG00000068883 678 0.801 - 0.801 - - - - - - - tetraspanin 13a [Source:ZFIN;Acc:ZDB-GENE-040718-19]
97. ebp ENSDARG00000046098 502 0.799 - - - - - 0.799 - - - EBP, cholestenol delta-isomerase [Source:ZFIN;Acc:ZDB-GENE-040718-12]
98. cxcl-c1c cxcl-c1c 159 0.799 - - - - - 0.799 - - -
99. SPEN ENSDARG00000074245, ENSDARG00000116696 1412 0.799 - - - 0.799 - - - - - spen family transcriptional repressor [Source:ZFIN;Acc:ZDB-GENE-050309-70]
100. scamp4 ENSDARG00000010531, ENSDARG00000114792 1143 0.798 0.798 - - - - - - - - secretory carrier membrane protein 4 [Source:ZFIN;Acc:ZDB-GENE-050913-40]

There are 590 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA