Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for SHMT1

Gene Name Gene ID Reads Annotation
SHMT1 ENSGALG00000005046 1430 serine hydroxymethyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:10850]











Genes with expression patterns similar to SHMT1

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. SHMT1 ENSGALG00000005046 1430 9 - 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 serine hydroxymethyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:10850]
2. GTF2H2 ENSGALG00000002399 2361 2.409 - - 0.940 - - - 0.768 0.701 - - general transcription factor IIH subunit 2, transcript variant X2
3. ADK ENSGALG00000005057 199 1.707 - - 0.933 - - - - - 0.774 - adenosine kinase [Source:NCBI gene;Acc:423735]
4. LBR 6686 1.648 - - 0.891 - - - 0.757 - - - lamin B receptor, transcript variant X4
5. DBN1 ENSGALG00000033405 216 1.644 - - 0.935 0.709 - - - - - - drebrin 1 [Source:NCBI gene;Acc:396496]
6. UBE2B ENSGALG00000032664 6069 1.627 - - 0.884 - - - 0.743 - - - ubiquitin conjugating enzyme E2 B [Source:HGNC Symbol;Acc:HGNC:12473]
7. C18orf8 C18orf8 1512 1.626 - - 0.906 0.720 - - - - - -
8. KDM6A ENSGALG00000016217 2302 1.624 - - 0.873 - - - - 0.751 - - lysine demethylase 6A, transcript variant X14
9. AGFG1 ENSGALG00000003052 4766 1.623 - - 0.851 - - - 0.772 - - - ArfGAP with FG repeats 1 [Source:HGNC Symbol;Acc:HGNC:5175]
10. ERCC3 ENSGALG00000011515 3133 1.615 - - 0.888 - - - - 0.727 - - ERCC excision repair 3, TFIIH core complex helicase subunit [Source:NCBI gene;Acc:424226]
11. PANK1 ENSGALG00000006431 2910 1.609 - - 0.875 0.734 - - - - - - pantothenate kinase 1 [Source:HGNC Symbol;Acc:HGNC:8598]
12. NUPL1 NUPL1 8197 1.594 - - 0.807 - - - 0.787 - - -
13. LGR4 ENSGALG00000040834 5529 1.593 - - 0.870 - - - 0.723 - - - leucine rich repeat containing G protein-coupled receptor 4 [Source:HGNC Symbol;Acc:HGNC:13299]
14. RNF20 ENSGALG00000015548 7199 1.59 - - 0.832 - - - - 0.758 - - ring finger protein 20 [Source:NCBI gene;Acc:427310]
15. N4BP2L2 857 1.589 - - 0.874 - - - - 0.715 - - NEDD4 binding protein 2 like 2, transcript variant X7
16. NUBP1 ENSGALG00000007241 3791 1.586 - - 0.883 - - - - 0.703 - - nucleotide binding protein 1 [Source:NCBI gene;Acc:416634]
17. CHN1 ENSGALG00000009293 6415 1.586 - - 0.772 - - - 0.814 - - - chimerin 1 [Source:NCBI gene;Acc:429021]
18. DARS2 ENSGALG00000023749 2386 1.563 - - 0.826 - - - 0.737 - - - aspartyl-tRNA synthetase 2, mitochondrial [Source:HGNC Symbol;Acc:HGNC:25538]
19. SP3 ENSGALG00000031796 8997 1.559 - - 0.849 - - - 0.710 - - - Sp3 transcription factor [Source:NCBI gene;Acc:395302]
20. TGFBI ENSGALG00000029429 2306 1.547 - - 0.827 - - - 0.720 - - - transforming growth factor beta induced [Source:NCBI gene;Acc:395897]
21. CHRAC1 ENSGALG00000040823 5695 1.541 - - - - - - 0.817 0.724 - - chromatin accessibility complex subunit 1 [Source:HGNC Symbol;Acc:HGNC:13544]
22. CCNI ENSGALG00000011457 3203 1.54 - - 0.785 0.755 - - - - - - cyclin I [Source:HGNC Symbol;Acc:HGNC:1595]
23. POGLUT1 ENSGALG00000015480 12290 1.538 - - 0.783 - - - - - 0.755 - protein O-glucosyltransferase 1 [Source:NCBI gene;Acc:418455]
24. LYPLA2 ENSGALG00000004002 3939 1.536 - - 0.826 - - - 0.710 - - - lysophospholipase II [Source:NCBI gene;Acc:419685]
25. GPC1 ENSGALG00000040316 13364 1.534 - - 0.797 - - - - 0.737 - - glypican 1 [Source:NCBI gene;Acc:424770]
26. SLC41A1 ENSGALG00000000721 1604 1.532 - - 0.815 - - - 0.717 - - - solute carrier family 41 member 1 [Source:HGNC Symbol;Acc:HGNC:19429]
27. TDP2 ENSGALG00000013637 6595 1.531 - - 0.829 - - - - 0.702 - - tyrosyl-DNA phosphodiesterase 2 [Source:NCBI gene;Acc:421007]
28. ELMOD1 ENSGALG00000017169 2303 1.529 - - 0.798 0.731 - - - - - - ELMO domain containing 1 [Source:HGNC Symbol;Acc:HGNC:25334]
29. BMS1 ENSGALG00000002624 8339 1.52 - - 0.805 - - - 0.715 - - - BMS1, ribosome biogenesis factor [Source:NCBI gene;Acc:423633]
30. SPCS1 ENSGALG00000001655 7718 1.514 - - 0.790 - - - - 0.724 - - signal peptidase complex subunit 1 [Source:NCBI gene;Acc:415899]
31. ZNHIT3 ENSGALG00000026031 8652 1.506 - - 0.755 - - - 0.751 - - - zinc finger HIT-type containing 3 [Source:HGNC Symbol;Acc:HGNC:12309]
32. AAMP ENSGALG00000011445 2528 1.493 - - 0.787 - - - 0.706 - - - angio associated migratory cell protein [Source:NCBI gene;Acc:769880]
33. SPCS3 ENSGALG00000010839 19106 1.492 - - 0.764 - - - 0.728 - - - signal peptidase complex subunit 3 [Source:NCBI gene;Acc:396234]
34. WDR3 ENSGALG00000014791 5856 1.49 - - 0.784 - - - - 0.706 - - WD repeat domain 3 [Source:NCBI gene;Acc:427952]
35. MDFIC ENSGALG00000026838 3881 1.487 - - - - - - 0.780 0.707 - - MyoD family inhibitor domain containing [Source:HGNC Symbol;Acc:HGNC:28870]
36. PSMB2 ENSGALG00000026421 51885 1.482 - - 0.713 - - - 0.769 - - - proteasome subunit beta 2 [Source:HGNC Symbol;Acc:HGNC:9539]
37. TARDBP ENSGALG00000002906 24748 1.482 - - 0.710 - - - 0.772 - - - TAR DNA binding protein [Source:NCBI gene;Acc:419453]
38. CDC45 ENSGALG00000001616 8432 1.471 - - 0.742 - - - 0.729 - - - cell division cycle 45 [Source:HGNC Symbol;Acc:HGNC:1739]
39. VTA1 ENSGALG00000013810 4998 1.47 - - 0.749 - - - - 0.721 - - vesicle trafficking 1 [Source:HGNC Symbol;Acc:HGNC:20954]
40. LBH ENSGALG00000009052 5545 1.469 - - 0.727 - - - - 0.742 - - limb bud and heart development [Source:NCBI gene;Acc:421301]
41. PSMD13 ENSGALG00000043684 14720 1.457 - - 0.741 - - - - 0.716 - - proteasome 26S subunit, non-ATPase 13 [Source:HGNC Symbol;Acc:HGNC:9558]
42. ADI1 ENSGALG00000025796 8636 1.44 - - - - - - 0.740 0.700 - - acireductone dioxygenase 1 [Source:NCBI gene;Acc:421918]
43. ABHD17B ENSGALG00000015139 2805 1.434 - - - 0.732 - - 0.702 - - - abhydrolase domain containing 17B [Source:NCBI gene;Acc:427252]
44. ATR ENSGALG00000002663 4626 1.426 - - - 0.721 - - 0.705 - - - ATR serine/threonine kinase [Source:HGNC Symbol;Acc:HGNC:882]
45. HERC2 ENSGALG00000016739 9900 1.425 - - - 0.709 - - 0.716 - - - HECT and RLD domain containing E3 ubiquitin protein ligase 2 [Source:NCBI gene;Acc:418682]
46. GABARAPL2 ENSGALG00000003208 9195 1.421 - - 0.717 - - - 0.704 - - - GABA type A receptor associated protein like 2 [Source:HGNC Symbol;Acc:HGNC:13291]
47. UHRF2 ENSGALG00000015052 1268 0.968 - - 0.968 - - - - - - - ubiquitin like with PHD and ring finger domains 2 [Source:HGNC Symbol;Acc:HGNC:12557]
48. RTFDC1 ENSGALG00000007709 1727 0.966 - - 0.966 - - - - - - - replication termination factor 2 domain containing 1 [Source:NCBI gene;Acc:419329]
49. CTNS ENSGALG00000004628 1358 0.966 - - 0.966 - - - - - - - cystinosin, lysosomal cystine transporter [Source:HGNC Symbol;Acc:HGNC:2518]
50. SOBP ENSGALG00000043047 147 0.965 - - 0.965 - - - - - - - sine oculis binding protein homolog [Source:NCBI gene;Acc:421775]
51. APTX ENSGALG00000001954 692 0.962 - - 0.962 - - - - - - - aprataxin [Source:NCBI gene;Acc:395173]
52. ATP10D ENSGALG00000014192 94 0.961 - - 0.961 - - - - - - - ATPase phospholipid transporting 10D (putative) [Source:HGNC Symbol;Acc:HGNC:13549]
53. IFT81 ENSGALG00000003854 2534 0.958 - - 0.958 - - - - - - - intraflagellar transport 81 [Source:NCBI gene;Acc:416839]
54. AKT3 ENSGALG00000034081 866 0.948 - - 0.948 - - - - - - - AKT serine/threonine kinase 3 [Source:HGNC Symbol;Acc:HGNC:393]
55. HYAL3 ENSGALG00000029000 712 0.946 - - 0.946 - - - - - - - hyaluronoglucosaminidase 3 [Source:HGNC Symbol;Acc:HGNC:5322]
56. TCTN2 ENSGALG00000023683 3596 0.945 - - 0.945 - - - - - - - tectonic family member 2 [Source:HGNC Symbol;Acc:HGNC:25774]
57. OSGIN2 ENSGALG00000042840 83 0.942 - - 0.942 - - - - - - - oxidative stress induced growth inhibitor family member 2 [Source:HGNC Symbol;Acc:HGNC:1355]
58. RALGDS ENSGALG00000003412 4478 0.941 - - 0.941 - - - - - - - ral guanine nucleotide dissociation stimulator, transcript variant X10
59. UEVLD ENSGALG00000006342 164 0.94 - - 0.940 - - - - - - - UEV and lactate/malate dehyrogenase domains [Source:NCBI gene;Acc:100858486]
60. U4 U4 69 0.94 - - 0.940 - - - - - - -
61. ENSGALG00000028964 ENSGALG00000028964 46 0.94 - - 0.940 - - - - - - -
62. OGFOD2 ENSGALG00000003687 1200 0.939 - - 0.939 - - - - - - - 2-oxoglutarate and iron dependent oxygenase domain containing 2 [Source:HGNC Symbol;Acc:HGNC:25823]
63. TDRD6 48 0.939 - - 0.939 - - - - - - - tudor domain containing 6
64. ITGB4 ENSGALG00000002389 44 0.939 - - 0.939 - - - - - - - integrin subunit beta 4 [Source:HGNC Symbol;Acc:HGNC:6158]
65. ENSGALG00000004703 ENSGALG00000004703 112 0.939 - - 0.939 - - - - - - -
66. MRC2 ENSGALG00000000461 48 0.939 - - 0.939 - - - - - - - mannose receptor C type 2 [Source:HGNC Symbol;Acc:HGNC:16875]
67. RQCD1 RQCD1 110 0.938 - - 0.938 - - - - - - -
68. SZT2 ENSGALG00000028561 255 0.938 - - 0.938 - - - - - - - seizure threshold 2 homolog (mouse) [Source:NCBI gene;Acc:424566]
69. GFER ENSGALG00000005579 1367 0.938 - - 0.938 - - - - - - - growth factor, augmenter of liver regeneration [Source:HGNC Symbol;Acc:HGNC:4236]
70. ENSGALG00000020103 ENSGALG00000020103 64 0.938 - - 0.938 - - - - - - -
71. IFT57 ENSGALG00000015356 5540 0.938 - - 0.938 - - - - - - - intraflagellar transport 57 [Source:HGNC Symbol;Acc:HGNC:17367]
72. F2R ENSGALG00000014983 106 0.938 - - 0.938 - - - - - - - coagulation factor II thrombin receptor [Source:HGNC Symbol;Acc:HGNC:3537]
73. PRUNE PRUNE 452 0.937 - - 0.937 - - - - - - -
74. ITM2B ENSGALG00000016996 1112 0.937 - - 0.937 - - - - - - - integral membrane protein 2B [Source:NCBI gene;Acc:395969]
75. FBXL5 ENSGALG00000014510 245 0.937 - - 0.937 - - - - - - - F-box and leucine rich repeat protein 5 [Source:HGNC Symbol;Acc:HGNC:13602]
76. CDC14B ENSGALG00000012627 110 0.937 - - 0.937 - - - - - - - Gallus gallus cell division cycle 14B (CDC14B), mRNA. [Source:RefSeq mRNA;Acc:NM_001318405]
77. PTDSS2 ENSGALG00000004300 682 0.937 - - 0.937 - - - - - - - phosphatidylserine synthase 2 [Source:NCBI gene;Acc:422997]
78. TRIM13 ENSGALG00000017011 92 0.936 - - 0.936 - - - - - - - tripartite motif containing 13 [Source:HGNC Symbol;Acc:HGNC:9976]
79. SLC3A1 ENSGALG00000009973 608 0.936 - - 0.936 - - - - - - - solute carrier family 3 member 1 [Source:HGNC Symbol;Acc:HGNC:11025]
80. MED12 ENSGALG00000036322 814 0.936 - - 0.936 - - - - - - - mediator complex subunit 12 [Source:HGNC Symbol;Acc:HGNC:11957]
81. ENSGALG00000002020 ENSGALG00000002020 183 0.935 - - 0.935 - - - - - - -
82. LRRC42 ENSGALG00000010743 384 0.935 - - 0.935 - - - - - - - leucine rich repeat containing 42 [Source:HGNC Symbol;Acc:HGNC:28792]
83. CLEC16A ENSGALG00000007167 66 0.935 - - 0.935 - - - - - - - C-type lectin domain containing 16A [Source:HGNC Symbol;Acc:HGNC:29013]
84. AKAP10 ENSGALG00000004679 103 0.935 - - 0.935 - - - - - - - A-kinase anchoring protein 10 [Source:HGNC Symbol;Acc:HGNC:368]
85. GDPD4 ENSGALG00000000690 824 0.935 - - 0.935 - - - - - - - glycerophosphodiester phosphodiesterase domain containing 4 [Source:HGNC Symbol;Acc:HGNC:24849]
86. RPS6KB1 ENSGALG00000005198 169 0.935 - - 0.935 - - - - - - - ribosomal protein S6 kinase B1 [Source:NCBI gene;Acc:417637]
87. ABCC3 ENSGALG00000007522 340 0.934 - - 0.934 - - - - - - - ATP binding cassette subfamily C member 3, transcript variant X5
88. NXPE3 ENSGALG00000015344 111 0.934 - - 0.934 - - - - - - - neurexophilin and PC-esterase domain family member 3 [Source:HGNC Symbol;Acc:HGNC:28238]
89. SMARCAD1 ENSGALG00000037339 149 0.933 - - 0.933 - - - - - - - SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 [Source:HGNC Symbol;Acc:HGNC:18398]
90. ATP8B4 ENSGALG00000002326 456 0.933 - - 0.933 - - - - - - - ATPase phospholipid transporting 8B4 (putative), transcript variant X4
91. RAD54L2 ENSGALG00000003243 187 0.933 - - 0.933 - - - - - - - RAD54-like 2 (S. cerevisiae) [Source:NCBI gene;Acc:415933]
92. L3MBTL3 ENSGALG00000034030 113 0.933 - - 0.933 - - - - - - - L3MBTL3, histone methyl-lysine binding protein [Source:HGNC Symbol;Acc:HGNC:23035]
93. MTHFSD ENSGALG00000033322 824 0.932 - - 0.932 - - - - - - - methenyltetrahydrofolate synthetase domain containing [Source:HGNC Symbol;Acc:HGNC:25778]
94. LRRC71 ENSGALG00000027351 695 0.932 - - 0.932 - - - - - - - leucine rich repeat containing 71 [Source:HGNC Symbol;Acc:HGNC:26556]
95. CHAMP1 ENSGALG00000016813 508 0.931 - - 0.931 - - - - - - - chromosome alignment maintaining phosphoprotein 1 [Source:HGNC Symbol;Acc:HGNC:20311]
96. SNN ENSGALG00000028876 1687 0.93 - - 0.930 - - - - - - - stannin [Source:NCBI gene;Acc:416429]
97. IQCD ENSGALG00000037307 642 0.93 - - 0.930 - - - - - - - IQ motif containing D, transcript variant X2
98. PCYOX1 ENSGALG00000013878 2200 0.929 - - 0.929 - - - - - - - prenylcysteine oxidase 1 [Source:HGNC Symbol;Acc:HGNC:20588]
99. RRN3 ENSGALG00000041989 3934 0.929 - - 0.929 - - - - - - - RRN3 homolog, RNA polymerase I transcription factor [Source:NCBI gene;Acc:416414]
100. VPS13D ENSGALG00000034777 2350 0.929 - - 0.929 - - - - - - - vacuolar protein sorting 13 homolog D [Source:HGNC Symbol;Acc:HGNC:23595]

There are 715 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA