Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Zebrafish data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for SHISA4

Gene Name Gene ID Reads Annotation
SHISA4 ENSDARG00000006307, ENSDARG00000112041 4884 shisa family member 4 [Source:ZFIN;Acc:ZDB-GENE-050417-419]










Genes with expression patterns similar to SHISA4

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. SHISA4 ENSDARG00000006307, ENSDARG00000112041 4884 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 shisa family member 4 [Source:ZFIN;Acc:ZDB-GENE-050417-419]
2. si:ch211-114l13.11 si:ch211-114l13.11 4727 1.8 - - - - - - 0.889 0.911 -
3. rab27a ENSDARG00000103935 1173 1.77 - - - - - - 0.876 0.894 - RAB27A, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-050913-46]
4. FUCA1 FUCA1 1446 1.747 - - - - - - 0.908 0.839 -
5. tmbim4 ENSDARG00000014361 2549 1.745 - - - - - - 0.832 0.913 - transmembrane BAX inhibitor motif containing 4 [Source:ZFIN;Acc:ZDB-GENE-040426-2152]
6. mfn1b ENSDARG00000079219 1699 1.69 - - - - - - 0.796 0.894 - mitofusin 1b [Source:ZFIN;Acc:ZDB-GENE-040426-1553]
7. safb ENSDARG00000020467 5608 1.675 - 0.803 - - - - 0.872 - - scaffold attachment factor B [Source:ZFIN;Acc:ZDB-GENE-030131-698]
8. capn12 ENSDARG00000010758, ENSDARG00000116381 3116 1.668 - 0.854 - - - - 0.814 - - calpain 12 [Source:ZFIN;Acc:ZDB-GENE-050419-245]
9. adpgk2 ENSDARG00000062785 8229 1.658 - - - - - - 0.767 0.891 - ADP-dependent glucokinase 2 [Source:ZFIN;Acc:ZDB-GENE-090609-3]
10. klhl40b ENSDARG00000019125 3633 1.638 - - - - - - 0.755 0.883 - kelch-like family member 40b [Source:ZFIN;Acc:ZDB-GENE-060227-1]
11. alox12 ENSDARG00000069463 5787 1.62 - - - - - - 0.784 0.836 - arachidonate 12-lipoxygenase [Source:ZFIN;Acc:ZDB-GENE-030131-1452]
12. slc25a25a ENSDARG00000010572 1240 1.612 - 0.782 - - - - 0.830 - - solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25a [Source:ZFIN;Acc:ZDB-GENE-040426-2396]
13. phf3 ENSDARG00000034768 1372 1.611 - 0.732 - - - - - 0.879 - PHD finger protein 3 [Source:ZFIN;Acc:ZDB-GENE-090313-207]
14. dpm3 ENSDARG00000058650 4386 1.602 - 0.831 - - - - 0.771 - - dolichyl-phosphate mannosyltransferase polypeptide 3 [Source:ZFIN;Acc:ZDB-GENE-040426-1782]
15. nhp2l1a nhp2l1a 993 1.599 0.755 - - - - - 0.844 - -
16. nf2b ENSDARG00000025567 1441 1.599 0.703 - - - - - - 0.896 - neurofibromin 2b (merlin) [Source:ZFIN;Acc:ZDB-GENE-040622-3]
17. syne2b ENSDARG00000053484 9225 1.572 - 0.730 - - - - - 0.842 - spectrin repeat containing, nuclear envelope 2b [Source:ZFIN;Acc:ZDB-GENE-071218-5]
18. hnrpdl 14288 1.518 - - - - - - 0.788 0.730 - heterogeneous nuclear ribonucleoprotein D-like, transcript variant X2
19. nedd8 ENSDARG00000007989 3896 1.5 - 0.758 - - - - - 0.742 - neural precursor cell expressed, developmentally down-regulated 8 [Source:ZFIN;Acc:ZDB-GENE-030616-588]
20. creb1a ENSDARG00000053586 5068 1.498 0.711 - - - - - - 0.787 - cAMP responsive element binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-040426-750]
21. zgc:165653 ENSDARG00000104713 1603 0.946 - - - - - - 0.946 - - zgc:165653 [Source:ZFIN;Acc:ZDB-GENE-070620-24]
22. inppl1a ENSDARG00000104222 6256 0.944 - - - - - - 0.944 - - inositol polyphosphate phosphatase-like 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3904]
23. fam213aa 1986 0.937 - - - - - - 0.937 - - family with sequence similarity 213, member Aa
24. tpd52l2b ENSDARG00000013655 9460 0.932 - - - - - - 0.932 - - tumor protein D52-like 2b [Source:ZFIN;Acc:ZDB-GENE-030131-822]
25. rab11ba ENSDARG00000041878 4651 0.93 - - - - - - 0.930 - - RAB11B, member RAS oncogene family, a [Source:ZFIN;Acc:ZDB-GENE-040426-2860]
26. srp72 ENSDARG00000014139 5221 0.929 - - - - - - 0.929 - - signal recognition particle 72 [Source:ZFIN;Acc:ZDB-GENE-030131-5546]
27. bet1 ENSDARG00000034885, ENSDARG00000113480 3627 0.929 - - - - - - 0.929 - - Bet1 golgi vesicular membrane trafficking protein [Source:ZFIN;Acc:ZDB-GENE-040625-3]
28. cope ENSDARG00000018562 17276 0.927 - - - - - - 0.927 - - coatomer protein complex, subunit epsilon [Source:ZFIN;Acc:ZDB-GENE-041114-59]
29. ppp1r3b ENSDARG00000044691, ENSDARG00000110639, ENSDARG00000114900 2990 0.925 - - - - - - 0.925 - - protein phosphatase 1, regulatory subunit 3B [Source:ZFIN;Acc:ZDB-GENE-030131-5496]
30. ARHGAP23 ARHGAP23 3946 0.923 - - - - - - 0.923 - -
31. med28 ENSDARG00000037410, ENSDARG00000112591, ENSDARG00000113633, ENSDARG00000117136 629 0.921 - - - - - - - 0.921 - mediator complex subunit 28 [Source:ZFIN;Acc:ZDB-GENE-041121-4]
32. CU302436.1 ENSDARG00000114500 1619 0.92 - - - - - 0.920 - - - si:dkey-108k21.25 [Source:NCBI gene;Acc:103909883]
33. si:dkeyp-120h9.1 ENSDARG00000020278 3120 0.919 - - - - - - 0.919 - - si:dkeyp-120h9.1 [Source:ZFIN;Acc:ZDB-GENE-070705-534]
34. acbd3 ENSDARG00000042623 2643 0.919 - - - - - - 0.919 - - acyl-Coenzyme A binding domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-040426-1930]
35. dbt ENSDARG00000101561, ENSDARG00000110773 1537 0.917 - - - - - - - 0.917 - dihydrolipoamide branched chain transacylase E2 [Source:ZFIN;Acc:ZDB-GENE-050320-85]
36. laptm4b ENSDARG00000035870, ENSDARG00000110893 960 0.917 - - - - - - 0.917 - - lysosomal protein transmembrane 4 beta [Source:ZFIN;Acc:ZDB-GENE-030616-616]
37. znf385a ENSDARG00000009899 3433 0.917 - - - - - - 0.917 - - zinc finger protein 385A [Source:ZFIN;Acc:ZDB-GENE-090313-255]
38. FRRS1_1 FRRS1_1 831 0.916 - - - - - - - 0.916 -
39. ak2 ENSDARG00000005926 7598 0.915 - - - - - - 0.915 - - adenylate kinase 2 [Source:ZFIN;Acc:ZDB-GENE-030131-512]
40. ENSDARG00000058255 ENSDARG00000058255 1715 0.914 - - - - - - 0.914 - -
41. sp3b ENSDARG00000007812 2928 0.914 - - - - - - 0.914 - - Sp3b transcription factor [Source:ZFIN;Acc:ZDB-GENE-110815-3]
42. FAM110D FAM110D 3632 0.914 - - - - - - 0.914 - -
43. kazald3 ENSDARG00000053509 513 0.914 - - - - - - - 0.914 - Kazal-type serine peptidase inhibitor domain 3 [Source:ZFIN;Acc:ZDB-GENE-050208-155]
44. helz ENSDARG00000030560 3259 0.913 - - - - - - - 0.913 - helicase with zinc finger [Source:ZFIN;Acc:ZDB-GENE-040426-2419]
45. RAMP1 RAMP1 736 0.913 - - - - - - 0.913 - -
46. alpi.1 ENSDARG00000015273 1712 0.912 - - - - - - - 0.912 - alkaline phosphatase, intestinal, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-050327-78]
47. rps27.2_1 ENSDARG00000055475 2786 0.912 - - - - - - - 0.912 - ribosomal protein S27, isoform 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1735]
48. nans nans 1365 0.912 - - - - - - - 0.912 -
49. pon2 ENSDARG00000016856 1382 0.911 - - - - - - - 0.911 - paraoxonase 2 [Source:ZFIN;Acc:ZDB-GENE-030131-7116]
50. scaf11 ENSDARG00000045885 3531 0.911 - - - - - - 0.911 - - SR-related CTD-associated factor 11 [Source:ZFIN;Acc:ZDB-GENE-041210-22]
51. ppiab ENSDARG00000103994 47491 0.91 - - - - - - 0.910 - - peptidylprolyl isomerase Ab (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-7459]
52. scaf4a ENSDARG00000077093 2408 0.91 - - - - - - - 0.910 - SR-related CTD-associated factor 4a [Source:ZFIN;Acc:ZDB-GENE-030131-9003]
53. DYNC1I2 DYNC1I2 4131 0.91 - - - - - - 0.910 - -
54. eif2ak3 ENSDARG00000062139 3276 0.909 - - - - - - 0.909 - - eukaryotic translation initiation factor 2-alpha kinase 3 [Source:ZFIN;Acc:ZDB-GENE-050414-2]
55. si:ch211-120p12.3 1079 0.909 - - - - - - - 0.909 - si:ch211-120p12.3, transcript variant X2
56. rab2a ENSDARG00000020261 24540 0.908 - - - - - - 0.908 - - RAB2A, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-011212-2]
57. lnx1 ENSDARG00000043323, ENSDARG00000113875 1199 0.907 - - - - - - 0.907 - - ligand of numb-protein X 1 [Source:ZFIN;Acc:ZDB-GENE-030131-9439]
58. uros ENSDARG00000027491 1147 0.907 - - - - - - - 0.907 - uroporphyrinogen III synthase [Source:ZFIN;Acc:ZDB-GENE-040323-2]
59. ubap2l ENSDARG00000063219 1147 0.907 - - - - - - 0.907 - - ubiquitin associated protein 2-like [Source:ZFIN;Acc:ZDB-GENE-060503-244]
60. gltscr2 gltscr2 5763 0.907 - - - - - - 0.907 - -
61. larp4b ENSDARG00000062146 1601 0.906 - - - - - - - 0.906 - La ribonucleoprotein domain family, member 4B [Source:ZFIN;Acc:ZDB-GENE-061027-39]
62. rfx4 ENSDARG00000026395, ENSDARG00000116861 2047 0.906 - - - - - - - 0.906 - regulatory factor X, 4 [Source:ZFIN;Acc:ZDB-GENE-040909-2]
63. fkbp8 ENSDARG00000001734 1709 0.906 - - - - - - - 0.906 - FK506 binding protein 8 [Source:ZFIN;Acc:ZDB-GENE-040426-1849]
64. sf3b2 ENSDARG00000018049 4675 0.905 - - - - - - - 0.905 - splicing factor 3b, subunit 2 [Source:ZFIN;Acc:ZDB-GENE-070928-1]
65. TAF2 ENSDARG00000102307 1401 0.904 - - - - - - 0.904 - - TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor [Source:ZFIN;Acc:ZDB-GENE-030131-3207]
66. tnikb ENSDARG00000009031 1836 0.904 - - - - - - 0.904 - - TRAF2 and NCK interacting kinase b [Source:ZFIN;Acc:ZDB-GENE-051113-320]
67. ap1b1 ENSDARG00000020621 3874 0.904 - - - - - - 0.904 - - adaptor related protein complex 1 subunit beta 1 [Source:ZFIN;Acc:ZDB-GENE-061025-1]
68. eif4ebp2 ENSDARG00000031819 13168 0.903 - - - - - - 0.903 - - eukaryotic translation initiation factor 4E binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-031118-83]
69. col6a1 ENSDARG00000074908 2339 0.903 - - - - - - 0.903 - - collagen, type VI, alpha 1 [Source:ZFIN;Acc:ZDB-GENE-070501-6]
70. frem1a ENSDARG00000069473 1847 0.903 - - - - - - 0.903 - - Fras1 related extracellular matrix 1a [Source:ZFIN;Acc:ZDB-GENE-081119-1]
71. fndc3ba ENSDARG00000078179 2753 0.903 - - - - - - - 0.903 - fibronectin type III domain containing 3Ba [Source:ZFIN;Acc:ZDB-GENE-070510-1]
72. med27 ENSDARG00000009681 1857 0.902 - - - - - - 0.902 - - mediator complex subunit 27 [Source:ZFIN;Acc:ZDB-GENE-040426-1601]
73. ncapd2 ENSDARG00000005058 2819 0.902 - - - - - - - 0.902 - non-SMC condensin I complex, subunit D2 [Source:ZFIN;Acc:ZDB-GENE-050506-59]
74. edf1 ENSDARG00000009950 10518 0.901 - - - - - - - 0.901 - endothelial differentiation-related factor 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1710]
75. atf6 ENSDARG00000012656 3873 0.901 - - - - - - 0.901 - - activating transcription factor 6 [Source:ZFIN;Acc:ZDB-GENE-041014-328]
76. ube2e1 ENSDARG00000116649 10656 0.901 - - - - - - 0.901 - - ubiquitin-conjugating enzyme E2E 1 [Source:ZFIN;Acc:ZDB-GENE-071004-16]
77. rngtt ENSDARG00000032261 833 0.9 - - - - - - - 0.900 - RNA guanylyltransferase and 5'-phosphatase [Source:ZFIN;Acc:ZDB-GENE-040426-2087]
78. calm2b 3890 0.9 - - - - - - 0.900 - - calmodulin 2b, (phosphorylase kinase, delta)
79. puf60a ENSDARG00000032175 5618 0.9 - - - - - - - 0.900 - poly-U binding splicing factor a [Source:ZFIN;Acc:ZDB-GENE-030131-2891]
80. sdpra sdpra 4594 0.9 - - - - - - 0.900 - -
81. esrp1 ENSDARG00000011245 2097 0.899 - - - - - - - 0.899 - epithelial splicing regulatory protein 1 [Source:ZFIN;Acc:ZDB-GENE-070112-1732]
82. yipf4 ENSDARG00000030957, ENSDARG00000109994 4665 0.899 - - - - - - - 0.899 - Yip1 domain family, member 4 [Source:ZFIN;Acc:ZDB-GENE-040426-2253]
83. dact1 ENSDARG00000101635 1303 0.899 - - - - - - - 0.899 - dishevelled-binding antagonist of beta-catenin 1 [Source:ZFIN;Acc:ZDB-GENE-040623-3]
84. fermt1 ENSDARG00000052652 2394 0.899 - - - - - - 0.899 - - fermitin family member 1 [Source:ZFIN;Acc:ZDB-GENE-030131-3264]
85. hoxc13b ENSDARG00000113877 549 0.898 - - - - - - - 0.898 - homeobox C13b [Source:ZFIN;Acc:ZDB-GENE-000822-5]
86. DEAF1 ENSDARG00000088844 380 0.898 - - - - - - - 0.898 - DEAF1 transcription factor [Source:ZFIN;Acc:ZDB-GENE-081022-163]
87. dpp3 ENSDARG00000020676 2393 0.898 - - - - - - - 0.898 - dipeptidyl-peptidase 3 [Source:ZFIN;Acc:ZDB-GENE-030131-1247]
88. zgc:171566 ENSDARG00000105118 340 0.897 - - - - - - - 0.897 - zgc:171566 [Source:ZFIN;Acc:ZDB-GENE-050309-193]
89. si:dkeyp-117h8.4 ENSDARG00000043004 457 0.897 - - - - - - - 0.897 - si:dkeyp-117h8.4 [Source:ZFIN;Acc:ZDB-GENE-030804-4]
90. tfe3a ENSDARG00000098903 1530 0.897 - - - - - - - 0.897 - transcription factor binding to IGHM enhancer 3a [Source:ZFIN;Acc:ZDB-GENE-010919-2]
91. si:dkey-287g12.6 ENSDARG00000096808 271 0.897 - - - - - - - 0.897 - si:dkey-287g12.6 [Source:ZFIN;Acc:ZDB-GENE-130603-36]
92. tmem50a ENSDARG00000015757 3244 0.897 - - - - - - - 0.897 - transmembrane protein 50A [Source:ZFIN;Acc:ZDB-GENE-040426-2937]
93. tmem104 ENSDARG00000088560 859 0.897 - - - - - - - 0.897 - transmembrane protein 104 [Source:ZFIN;Acc:ZDB-GENE-070822-4]
94. mgat1b ENSDARG00000036065 996 0.897 - - - - - - - 0.897 - mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase b [Source:ZFIN;Acc:ZDB-GENE-061103-589]
95. CU367845.1 CU367845.1 215 0.897 - - - - - - - 0.897 -
96. erh ENSDARG00000032866 20633 0.896 - - - - - - 0.896 - - enhancer of rudimentary homolog (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-990415-57]
97. telo2 ENSDARG00000000830, ENSDARG00000111572 241 0.896 - - - - - - - 0.896 - TEL2, telomere maintenance 2, homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-061103-523]
98. pho ENSDARG00000035133 670 0.896 - - - - - - - 0.896 - phoenix [Source:ZFIN;Acc:ZDB-GENE-030131-5935]
99. E2F3 ENSDARG00000070463 799 0.896 - - - - - - - 0.896 - E2F transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-070112-882]
100. tyms ENSDARG00000042894 3068 0.896 - - - - - - 0.896 - - thymidylate synthetase [Source:ZFIN;Acc:ZDB-GENE-040426-59]

There are 799 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA