Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for SHISA3

Gene Name Gene ID Reads Annotation
SHISA3 ENSGALG00000026042 1108 shisa family member 3 [Source:HGNC Symbol;Acc:HGNC:25159]











Genes with expression patterns similar to SHISA3

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. SHISA3 ENSGALG00000026042 1108 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 shisa family member 3 [Source:HGNC Symbol;Acc:HGNC:25159]
2. PRDM8 ENSGALG00000038372 928 3.304 - - 0.804 - 0.716 0.836 - - - 0.948 PR/SET domain 8 [Source:HGNC Symbol;Acc:HGNC:13993]
3. NKX-6.2 NKX-6.2 1370 3.245 - - 0.855 0.818 0.856 0.716 - - - -
4. MNR2 ENSGALG00000011349 3340 3.21 - - 0.898 0.772 0.827 0.713 - - - - homeodomain protein
5. MYT1 ENSGALG00000005932 2017 2.454 - - 0.871 0.804 0.779 - - - - - myelin transcription factor 1 [Source:HGNC Symbol;Acc:HGNC:7622]
6. STMN2 ENSGALG00000039690 989 2.366 - - 0.808 0.837 0.721 - - - - - stathmin 2 [Source:NCBI gene;Acc:396095]
7. ELAVL4 ENSGALG00000010533 4978 2.318 - - - 0.829 0.713 0.776 - - - - ELAV like RNA binding protein 4 [Source:NCBI gene;Acc:395634]
8. GPM6A ENSGALG00000043480 2133 2.276 - - 0.815 0.738 0.723 - - - - - glycoprotein M6A [Source:NCBI gene;Acc:422569]
9. EN1 ENSGALG00000042389 3051 1.561 - - - - 0.790 - - - - 0.771 engrailed homeobox 1 [Source:HGNC Symbol;Acc:HGNC:3342]
10. EF1A EF1A 2378 1.548 - - 0.804 - 0.744 - - - - -
11. TMSB10 TMSB10 518 1.526 - - 0.823 - - - - - - 0.703
12. RTN1 ENSGALG00000012006 2438 1.518 - - 0.753 0.765 - - - - - - reticulon 1 [Source:NCBI gene;Acc:378791]
13. SYT4 ENSGALG00000042626 384 1.512 - - 0.757 - 0.755 - - - - - synaptotagmin 4 [Source:HGNC Symbol;Acc:HGNC:11512]
14. NEFL ENSGALG00000000314 4883 1.506 - - 0.771 0.735 - - - - - - neurofilament light [Source:HGNC Symbol;Acc:HGNC:7739]
15. CSPG5 ENSGALG00000032184 991 1.494 - - - - - - 0.704 - - 0.790 chondroitin sulfate proteoglycan 5 [Source:NCBI gene;Acc:395466]
16. SLC10A4 ENSGALG00000033908 300 1.475 - - 0.715 - 0.760 - - - - - solute carrier family 10 member 4 [Source:HGNC Symbol;Acc:HGNC:22980]
17. TAGLN3 ENSGALG00000015379 7865 1.456 - - 0.746 0.710 - - - - - - transgelin 3 [Source:HGNC Symbol;Acc:HGNC:29868]
18. MAP6 ENSGALG00000007441 585 1.42 - - - - - - 0.718 - - 0.702 microtubule associated protein 6 [Source:NCBI gene;Acc:395753]
19. EFCAB6 ENSGALG00000014188 139 0.936 - - 0.936 - - - - - - - EF-hand calcium binding domain 6, transcript variant X3
20. LHX4 ENSGALG00000036587 14 0.929 - - - - - 0.929 - - - - LIM homeobox 4 [Source:HGNC Symbol;Acc:HGNC:21734]
21. TCF15 ENSGALG00000026276 3646 0.891 - - - - - 0.891 - - - - transcription factor 15 [Source:NCBI gene;Acc:395788]
22. ENSGALG00000026763 ENSGALG00000026763 10 0.879 - - - - - 0.879 - - - -
23. ENSGALG00000007388 ENSGALG00000007388 41 0.877 - - - - - 0.877 - - - -
24. MNX1 ENSGALG00000041154 244 0.876 - - 0.876 - - - - - - - motor neuron and pancreas homeobox 1 [Source:NCBI gene;Acc:395768]
25. GAP43 ENSGALG00000015089 505 0.869 - - 0.869 - - - - - - - growth associated protein 43 [Source:NCBI gene;Acc:427955]
26. ISL1 ENSGALG00000014884 7666 0.868 - - 0.868 - - - - - - - ISL LIM homeobox 1 [Source:NCBI gene;Acc:396383]
27. UTS2D UTS2D 2246 0.858 - - 0.858 - - - - - - -
28. KCNMB4 ENSGALG00000010044 377 0.847 - - - - - 0.847 - - - - potassium calcium-activated channel subfamily M regulatory beta subunit 4 [Source:NCBI gene;Acc:417852]
29. CHRNA10 ENSGALG00000022702 7 0.836 - - - - - - - - - 0.836 cholinergic receptor, nicotinic, alpha 10 (neuronal) [Source:NCBI gene;Acc:430628]
30. ZNF488 ENSGALG00000005975 82 0.83 - - - - - - - - - 0.830 zinc finger protein 488, transcript variant X2
31. SCML4 ENSGALG00000015309 499 0.827 - - 0.827 - - - - - - - Scm polycomb group protein like 4 [Source:HGNC Symbol;Acc:HGNC:21397]
32. MYH15 ENSGALG00000015358 6304 0.82 - - - - 0.820 - - - - - myosin, heavy chain 15 [Source:NCBI gene;Acc:395534]
33. GRM3 ENSGALG00000006576 474 0.812 - - - 0.812 - - - - - - glutamate metabotropic receptor 3 [Source:HGNC Symbol;Acc:HGNC:4595]
34. LOX ENSGALG00000028063 1488 0.809 - - - - - 0.809 - - - - lysyl oxidase [Source:NCBI gene;Acc:396474]
35. MYL1 ENSGALG00000002907 1300 0.808 - - - - 0.808 - - - - - myosin, light chain 1, alkali; skeletal, fast [Source:NCBI gene;Acc:396470]
36. BMP3 ENSGALG00000035052 3260 0.808 - - - 0.808 - - - - - - bone morphogenetic protein 3 [Source:NCBI gene;Acc:422581]
37. RGMA ENSGALG00000039173 12874 0.805 - - - - - - - - - 0.805 repulsive guidance molecule family member a [Source:NCBI gene;Acc:395214]
38. ENSGALG00000022967 ENSGALG00000022967 240 0.804 - - - - - - - - 0.804 -
39. MYH1D ENSGALG00000027323 365 0.802 - - - 0.802 - - - - - - Gallus gallus myosin, heavy chain 1D, skeletal muscle (MYH1D), mRNA. [Source:RefSeq mRNA;Acc:NM_001319304]
40. ENSGALG00000027002 ENSGALG00000027002 7570 0.802 - - - - - - - - - 0.802
41. CDH12 ENSGALG00000012941 223 0.799 - - - - 0.799 - - - - - cadherin 12, transcript variant X8
42. NHLH1 ENSGALG00000025817 1617 0.796 - - 0.796 - - - - - - - nescient helix-loop-helix 1 [Source:NCBI gene;Acc:373910]
43. FGF8 ENSGALG00000007706 32 0.791 - - - - - 0.791 - - - - fibroblast growth factor 8 [Source:NCBI gene;Acc:396313]
44. FAM110A ENSGALG00000046425 5558 0.784 - - - - - - - - - 0.784 family with sequence similarity 110 member A [Source:HGNC Symbol;Acc:HGNC:16188]
45. CRIP1 ENSGALG00000002771 4270 0.771 - - - - - 0.771 - - - - cysteine rich protein 1 [Source:NCBI gene;Acc:101747696]
46. SPINK7 SPINK7 254 0.77 - - 0.770 - - - - - - -
47. PAX-6 PAX-6 2650 0.766 - - - - - - - - - 0.766
48. TBX22 ENSGALG00000004093 781 0.762 - - - - - 0.762 - - - - T-box 22 [Source:NCBI gene;Acc:373895]
49. VSX1 ENSGALG00000037576 1517 0.759 - - - - - - - - - 0.759 visual system homeobox 1 [Source:NCBI gene;Acc:395537]
50. C1QTNF3 ENSGALG00000027887 8646 0.759 - - - - - 0.759 - - - - C1q and tumor necrosis factor related protein 3, transcript variant X1
51. ENPP2 ENSGALG00000032746 6086 0.758 - - - - - - - - - 0.758 ectonucleotide pyrophosphatase/phosphodiesterase 2 [Source:NCBI gene;Acc:420361]
52. CNTN2 ENSGALG00000000653 219 0.758 - - 0.758 - - - - - - - contactin 2 [Source:NCBI gene;Acc:419825]
53. SLC35F1 ENSGALG00000029011 14728 0.758 - - - - - - - - - 0.758 solute carrier family 35 member F1 [Source:HGNC Symbol;Acc:HGNC:21483]
54. GREB1L ENSGALG00000014935 88 0.757 - - - - - - - - - 0.757 GREB1 like retinoic acid receptor coactivator [Source:HGNC Symbol;Acc:HGNC:31042]
55. CLVS1 ENSGALG00000043172 56 0.756 - - 0.756 - - - - - - - clavesin 1
56. GADD45 GADD45 8780 0.756 - - - - - 0.756 - - - -
57. TGIF2 ENSGALG00000024081 21 0.755 - - 0.755 - - - - - - - TGFB induced factor homeobox 2 [Source:HGNC Symbol;Acc:HGNC:15764]
58. CRMP1B CRMP1B 18633 0.755 - - 0.755 - - - - - - -
59. MYL2_1 ENSGALG00000004582 2367 0.754 - - - - 0.754 - - - - - myosin, light chain 2, regulatory, cardiac, slow [Source:NCBI gene;Acc:416874]
60. TPST1 ENSGALG00000002598 170 0.751 - - - - - - - 0.751 - - tyrosylprotein sulfotransferase 1 [Source:HGNC Symbol;Acc:HGNC:12020]
61. SYBU ENSGALG00000036527 1221 0.747 - - - - - - 0.747 - - - syntabulin [Source:HGNC Symbol;Acc:HGNC:26011]
62. NRAP ENSGALG00000008914 24 0.741 - - - - - - - - - 0.741 nebulin related anchoring protein [Source:HGNC Symbol;Acc:HGNC:7988]
63. TPM1 ENSGALG00000003521 11894 0.74 - - - - 0.740 - - - - - tropomyosin 1 (alpha) [Source:NCBI gene;Acc:396366]
64. FAM19A1 32 0.735 - - - - - - - - - 0.735 family with sequence similarity 19 member A1, C-C motif chemokine like, transcript variant X5
65. BPIFB7 BPIFB7 22 0.732 - - - - - - - - - 0.732
66. PROKR2 ENSGALG00000008741 72 0.732 - - - 0.732 - - - - - - prokineticin receptor 2 [Source:NCBI gene;Acc:421263]
67. NTN3 ENSGALG00000029072 1368 0.728 - - - - - 0.728 - - - - netrin 1 [Source:NCBI gene;Acc:396387]
68. DUSP14 ENSGALG00000027641 3662 0.728 - - - 0.728 - - - - - - dual specificity phosphatase 14 [Source:HGNC Symbol;Acc:HGNC:17007]
69. FAM184B ENSGALG00000041854 43 0.728 - - - - - 0.728 - - - - family with sequence similarity 184 member B [Source:HGNC Symbol;Acc:HGNC:29235]
70. RGCC ENSGALG00000016954 1282 0.727 - - - - - 0.727 - - - - regulator of cell cycle [Source:HGNC Symbol;Acc:HGNC:20369]
71. ALDH6 ALDH6 771 0.726 - - - - - 0.726 - - - -
72. MYBPC1 ENSGALG00000012783 317 0.725 - - - - 0.725 - - - - - myosin binding protein C, slow type [Source:HGNC Symbol;Acc:HGNC:7549]
73. RBFOX1 ENSGALG00000034325 2133 0.724 - - - - - - - - 0.724 - RNA binding fox-1 homolog 1 [Source:HGNC Symbol;Acc:HGNC:18222]
74. MYH7B ENSGALG00000030985 199 0.722 - - - - - - - - - 0.722 Gallus gallus myosin, heavy chain 7B, cardiac muscle, beta (MYH7B), mRNA. [Source:RefSeq mRNA;Acc:NM_204587]
75. SH3BGR ENSGALG00000016127 2561 0.719 - - - - - 0.719 - - - - SH3 domain binding glutamate rich protein
76. PCDH8 ENSGALG00000036258 1945 0.719 - - - - - - - - - 0.719 protocadherin 8 [Source:NCBI gene;Acc:428065]
77. NFASC ENSGALG00000031776 4264 0.716 - - - 0.716 - - - - - - neurofascin [Source:NCBI gene;Acc:419824]
78. SNAP25 ENSGALG00000009003 222 0.716 - - 0.716 - - - - - - - synaptosome associated protein 25 [Source:NCBI gene;Acc:396444]
79. RAB26 ENSGALG00000032418 976 0.716 - - - - - 0.716 - - - - RAB26, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:14259]
80. NEFM ENSGALG00000000317 6992 0.716 - - - - 0.716 - - - - - neurofilament medium [Source:NCBI gene;Acc:396206]
81. GPR144 GPR144 30 0.715 - - - 0.715 - - - - - -
82. GPR158 ENSGALG00000007667 111 0.713 - - - - - - - - - 0.713 G protein-coupled receptor 158 [Source:NCBI gene;Acc:100859400]
83. GGMOXR1 GGMOXR1 6734 0.713 - - - - 0.713 - - - - -
84. WSCD2 ENSGALG00000004849 477 0.712 - - - - - - - - - 0.712 WSC domain containing 2 [Source:HGNC Symbol;Acc:HGNC:29117]
85. SIAT8C SIAT8C 178 0.712 - - - - - 0.712 - - - -
86. TNFIP6 TNFIP6 3024 0.71 - - - - - 0.710 - - - -
87. GADD45_1 GADD45_1 1433 0.71 - - - - - - 0.710 - - -
88. CCDC30 15 0.709 - - - - - - - - - 0.709 coiled-coil domain containing 30, transcript variant X4
89. MYF6 ENSGALG00000010936 1143 0.708 - - - - - - 0.708 - - - myogenic factor 6 [Source:NCBI gene;Acc:417873]
90. ACTA1 ENSGALG00000011086 2543 0.707 - - - - 0.707 - - - - - actin, alpha 1, skeletal muscle [Source:NCBI gene;Acc:421534]
91. TNNC2 ENSGALG00000006835 2963 0.707 - - - 0.707 - - - - - - troponin C2, fast skeletal type [Source:NCBI gene;Acc:396434]
92. VGLL2 ENSGALG00000014917 56 0.707 - - - - 0.707 - - - - - vestigial like family member 2 [Source:NCBI gene;Acc:421735]
93. HSPB8 ENSGALG00000007383 5333 0.705 - - - - - - 0.705 - - - heat shock protein family B (small) member 8 [Source:HGNC Symbol;Acc:HGNC:30171]
94. ECEL1 ENSGALG00000030420 670 0.702 - - 0.702 - - - - - - - endothelin converting enzyme like 1 [Source:HGNC Symbol;Acc:HGNC:3147]
Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA