Multi-species embryo Tomo-Seq

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Results for SHH

Gene Name	Gene ID	Reads	Annotation
SHH	ENSGALG00000006379	1943	sonic hedgehog [Source:NCBI gene;Acc:395615]

Genes with expression patterns similar to SHH

Nr.	Gene Name	Gene ID	Reads	Σ scores	E3 anterior slice 1	Annotation
1.	SHH	ENSGALG00000006379	1943	1	1.000	sonic hedgehog [Source:NCBI gene;Acc:395615]
2.	COL9A2	ENSGALG00000027526	4685	0.929	0.929	collagen type IX alpha 2 chain [Source:NCBI gene;Acc:396524]
3.	LECT1	LECT1	12694	0.902	0.902
4.	COL8A1	ENSGALG00000015253	2505	0.879	0.879	collagen type VIII alpha 1 chain [Source:NCBI gene;Acc:418378]
5.	PAX1	ENSGALG00000039040	3339	0.877	0.877	paired box 1 [Source:HGNC Symbol;Acc:HGNC:8615]
6.	C9H2ORF82	ENSGALG00000040264	4201	0.864	0.864	chromosome 9 open reading frame, human C2orf82 [Source:NCBI gene;Acc:768774]
7.	COL9A1	ENSGALG00000015970	3788	0.862	0.862	collagen type IX alpha 1 chain [Source:NCBI gene;Acc:771873]
8.	SOX9	ENSGALG00000004386	14802	0.86	0.860	SRY (sex determining region Y)-box 9 [Source:NCBI gene;Acc:374148]
9.	SCARA3	ENSGALG00000026651	2559	0.855	0.855	scavenger receptor class A member 3 [Source:HGNC Symbol;Acc:HGNC:19000]
10.	COL9A3	ENSGALG00000005628	2842	0.855	0.855	collagen type IX alpha 3 chain [Source:NCBI gene;Acc:396242]
11.	TIMP3	ENSGALG00000028627	8706	0.847	0.847	TIMP metallopeptidase inhibitor 3 [Source:NCBI gene;Acc:396483]
12.	EMILIN3	ENSGALG00000030012	6200	0.845	0.845	elastin microfibril interfacer 3 [Source:HGNC Symbol;Acc:HGNC:16123]
13.	T	ENSGALG00000011489	2619	0.837	0.837	T brachyury transcription factor [Source:NCBI gene;Acc:395782]
14.	ZNF385B	ENSGALG00000009012	290	0.83	0.830	zinc finger protein 385B [Source:HGNC Symbol;Acc:HGNC:26332]
15.	CYP1B1	ENSGALG00000025822	3143	0.825	0.825	cytochrome P450 family 1 subfamily B member 1 [Source:HGNC Symbol;Acc:HGNC:2597]
16.	TAC1	ENSGALG00000009737	2211	0.823	0.823	tachykinin precursor 1 [Source:HGNC Symbol;Acc:HGNC:11517]
17.	SST	ENSGALG00000007361	1383	0.817	0.817	somatostatin [Source:NCBI gene;Acc:396279]
18.	WWP2	ENSGALG00000000699	5040	0.816	0.816	WW domain containing E3 ubiquitin protein ligase 2 [Source:NCBI gene;Acc:415868]
19.	ENSGALG00000010113	ENSGALG00000010113	508	0.807	0.807
20.	CRIP1	ENSGALG00000002771	4270	0.801	0.801	cysteine rich protein 1 [Source:NCBI gene;Acc:101747696]
21.	EPB41L3	ENSGALG00000038678	5863	0.797	0.797	erythrocyte membrane protein band 4.1 like 3 [Source:HGNC Symbol;Acc:HGNC:3380]
22.	SMOC1	ENSGALG00000009415	2403	0.796	0.796	SPARC related modular calcium binding 1 [Source:HGNC Symbol;Acc:HGNC:20318]
23.	RAB38	ENSGALG00000028018	1046	0.792	0.792	RAB38, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:9776]
24.	BAFF	BAFF	40	0.783	0.783
25.	ACAN	ENSGALG00000006725	184	0.783	0.783	aggrecan [Source:NCBI gene;Acc:395798]
26.	SCIN	ENSGALG00000010770	883	0.772	0.772	scinderin [Source:NCBI gene;Acc:420588]
27.	EN1	ENSGALG00000042389	3051	0.745	0.745	engrailed homeobox 1 [Source:HGNC Symbol;Acc:HGNC:3342]
28.	TMEM163	ENSGALG00000012190	72	0.739	0.739	transmembrane protein 163 [Source:HGNC Symbol;Acc:HGNC:25380]
29.	OSF-2	OSF-2	10433	0.734	0.734
30.	C1QTNF3	ENSGALG00000027887	8646	0.732	0.732	C1q and tumor necrosis factor related protein 3, transcript variant X1
31.	TF	ENSGALG00000006453	14007	0.729	0.729	transferrin (ovotransferrin) [Source:NCBI gene;Acc:396241]
32.	ACBD7	ENSGALG00000019663	2328	0.727	0.727	acyl-CoA binding domain containing 7 [Source:HGNC Symbol;Acc:HGNC:17715]
33.	SPON1	ENSGALG00000038775	16503	0.726	0.726	spondin 1 [Source:NCBI gene;Acc:395657]
34.	SS2	ENSGALG00000003034	277	0.716	0.716	somatostatin II [Source:NCBI gene;Acc:395106]
35.	GPR37L1	ENSGALG00000000607	166	0.714	0.714	G protein-coupled receptor 37 like 1 [Source:HGNC Symbol;Acc:HGNC:14923]
36.	EFEMP1	ENSGALG00000037901	704	0.705	0.705	EGF containing fibulin extracellular matrix protein 1 [Source:HGNC Symbol;Acc:HGNC:3218]