Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for SHH

Gene Name Gene ID Reads Annotation
SHH ENSGALG00000006379 1943 sonic hedgehog [Source:NCBI gene;Acc:395615]











Genes with expression patterns similar to SHH

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. SHH ENSGALG00000006379 1943 9 - 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 sonic hedgehog [Source:NCBI gene;Acc:395615]
2. COL9A3 ENSGALG00000005628 2842 3.97 - - 0.855 0.744 - - 0.846 0.727 0.798 - collagen type IX alpha 3 chain [Source:NCBI gene;Acc:396242]
3. LECT1 LECT1 12694 3.589 - - 0.902 0.873 - - 0.919 - 0.895 -
4. COL9A2 ENSGALG00000027526 4685 3.401 - - 0.929 0.727 - - 0.857 - 0.888 - collagen type IX alpha 2 chain [Source:NCBI gene;Acc:396524]
5. C9H2ORF82 ENSGALG00000040264 4201 3.251 - - 0.864 - - - 0.848 0.734 0.805 - chromosome 9 open reading frame, human C2orf82 [Source:NCBI gene;Acc:768774]
6. T ENSGALG00000011489 2619 3.24 - - 0.837 - - - 0.904 - 0.784 0.715 T brachyury transcription factor [Source:NCBI gene;Acc:395782]
7. EMILIN3 ENSGALG00000030012 6200 3.228 - 0.709 0.845 - - - 0.906 - 0.768 - elastin microfibril interfacer 3 [Source:HGNC Symbol;Acc:HGNC:16123]
8. SOX9 ENSGALG00000004386 14802 3.15 - - 0.860 0.706 - - 0.761 - 0.823 - SRY (sex determining region Y)-box 9 [Source:NCBI gene;Acc:374148]
9. TIMP3 ENSGALG00000028627 8706 3.142 - - 0.847 - - - 0.758 0.729 0.808 - TIMP metallopeptidase inhibitor 3 [Source:NCBI gene;Acc:396483]
10. SST ENSGALG00000007361 1383 3.064 - - 0.817 - - - 0.770 0.710 - 0.767 somatostatin [Source:NCBI gene;Acc:396279]
11. SPON1 ENSGALG00000038775 16503 3.01 - - 0.726 0.728 - - 0.764 - 0.792 - spondin 1 [Source:NCBI gene;Acc:395657]
12. WWP2 ENSGALG00000000699 5040 2.643 - - 0.816 - - - 0.911 - 0.916 - WW domain containing E3 ubiquitin protein ligase 2 [Source:NCBI gene;Acc:415868]
13. OSF-2 OSF-2 10433 2.456 - - 0.734 - - - 0.912 - - 0.810
14. SCARA3 ENSGALG00000026651 2559 2.374 - - 0.855 - - - 0.720 - 0.799 - scavenger receptor class A member 3 [Source:HGNC Symbol;Acc:HGNC:19000]
15. RAB38 ENSGALG00000028018 1046 2.265 - - 0.792 - - - 0.760 - - 0.713 RAB38, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:9776]
16. COL8A1 ENSGALG00000015253 2505 1.753 - - 0.879 - - - 0.874 - - - collagen type VIII alpha 1 chain [Source:NCBI gene;Acc:418378]
17. SPON2 ENSGALG00000038433 1240 1.721 - - - - - - 0.900 - 0.821 - spondin 2 [Source:HGNC Symbol;Acc:HGNC:11253]
18. COL9A1 ENSGALG00000015970 3788 1.684 - - 0.862 - - - 0.822 - - - collagen type IX alpha 1 chain [Source:NCBI gene;Acc:771873]
19. TAC1 ENSGALG00000009737 2211 1.652 - - 0.823 - - - 0.829 - - - tachykinin precursor 1 [Source:HGNC Symbol;Acc:HGNC:11517]
20. CYP1B1 ENSGALG00000025822 3143 1.638 - - 0.825 - - - - - 0.813 - cytochrome P450 family 1 subfamily B member 1 [Source:HGNC Symbol;Acc:HGNC:2597]
21. ENSGALG00000010113 ENSGALG00000010113 508 1.633 - - 0.807 - - - 0.826 - - -
22. PAX1 ENSGALG00000039040 3339 1.61 - - 0.877 0.733 - - - - - - paired box 1 [Source:HGNC Symbol;Acc:HGNC:8615]
23. ACAN ENSGALG00000006725 184 1.593 - - 0.783 - - - - - 0.810 - aggrecan [Source:NCBI gene;Acc:395798]
24. PMP22 ENSGALG00000031425 5358 1.576 - - - - - - - - 0.803 0.773 peripheral myelin protein 22 [Source:NCBI gene;Acc:417327]
25. SMOC1 ENSGALG00000009415 2403 1.558 - - 0.796 - - - - - 0.762 - SPARC related modular calcium binding 1 [Source:HGNC Symbol;Acc:HGNC:20318]
26. ZNF385B ENSGALG00000009012 290 1.54 - - 0.830 - - - 0.710 - - - zinc finger protein 385B [Source:HGNC Symbol;Acc:HGNC:26332]
27. EPB41L3 ENSGALG00000038678 5863 1.516 - - 0.797 - - - 0.719 - - - erythrocyte membrane protein band 4.1 like 3 [Source:HGNC Symbol;Acc:HGNC:3380]
28. SAMD3 ENSGALG00000032409 459 1.502 - - - - - - - 0.713 - 0.789 sterile alpha motif domain containing 3 [Source:HGNC Symbol;Acc:HGNC:21574]
29. OCA2 ENSGALG00000016740 421 1.468 - - - - - - - 0.718 0.750 - OCA2 melanosomal transmembrane protein [Source:HGNC Symbol;Acc:HGNC:8101]
30. EFEMP1 ENSGALG00000037901 704 1.415 - - 0.705 0.710 - - - - - - EGF containing fibulin extracellular matrix protein 1 [Source:HGNC Symbol;Acc:HGNC:3218]
31. LIMCH1 ENSGALG00000014258 1987 0.876 - - - - - - - - 0.876 - LIM and calponin homology domains 1 [Source:HGNC Symbol;Acc:HGNC:29191]
32. RFTN2 ENSGALG00000036471 1307 0.85 - - - - - - - - - 0.850 raftlin family member 2 [Source:NCBI gene;Acc:424062]
33. SYNDIG1 ENSGALG00000039587 922 0.84 - - - - - - 0.840 - - - synapse differentiation inducing 1 [Source:HGNC Symbol;Acc:HGNC:15885]
34. MYOG ENSGALG00000000172 460 0.833 - - - - - - - - 0.833 - myogenin [Source:NCBI gene;Acc:374004]
35. RRAD ENSGALG00000005140 183 0.827 - - - - - - 0.827 - - - RRAD, Ras related glycolysis inhibitor and calcium channel regulator [Source:NCBI gene;Acc:415790]
36. COL11A1 ENSGALG00000005180 244 0.816 - - - - - - - - - 0.816 collagen type XI alpha 1 chain [Source:HGNC Symbol;Acc:HGNC:2186]
37. CRIP1 ENSGALG00000002771 4270 0.801 - - 0.801 - - - - - - - cysteine rich protein 1 [Source:NCBI gene;Acc:101747696]
38. SLC15A5 ENSGALG00000013097 213 0.799 - - - - - - 0.799 - - - solute carrier family 15 member 5 [Source:HGNC Symbol;Acc:HGNC:33455]
39. IYD ENSGALG00000012392 315 0.798 - - - - - - - - 0.798 - iodotyrosine deiodinase [Source:HGNC Symbol;Acc:HGNC:21071]
40. ENSGALG00000008822 ENSGALG00000008822 221 0.787 - - - - - - - - - 0.787
41. CCK ENSGALG00000029788 213 0.786 - - - - - - - - 0.786 - cholecystokinin [Source:NCBI gene;Acc:414884]
42. GDPD5 ENSGALG00000034967 1983 0.783 - - - - - - 0.783 - - - glycerophosphodiester phosphodiesterase domain containing 5 [Source:NCBI gene;Acc:419070]
43. BAFF BAFF 40 0.783 - - 0.783 - - - - - - -
44. HPGDS ENSGALG00000010402 343 0.782 - - - - - - - - - 0.782 hematopoietic prostaglandin D synthase [Source:NCBI gene;Acc:395863]
45. ENSGALG00000013409 ENSGALG00000013409 4 0.78 - - - - - - - - - 0.780
46. UGT2A1 ENSGALG00000011805 2 0.78 - - - - - - - - - 0.780 UDP glucuronosyltransferase 2 family, polypeptide A1, complex locus, transcript variant X3
47. PGR ENSGALG00000017195 2 0.78 - - - - - - - - - 0.780 progesterone receptor [Source:NCBI gene;Acc:396198]
48. ENSGALG00000010883 ENSGALG00000010883 10 0.78 - - - - - - - - - 0.780
49. SLC26A5 ENSGALG00000008222 3 0.78 - - - - - - - - - 0.780 solute carrier family 26 member 5 [Source:NCBI gene;Acc:417715]
50. SLC22A15 ENSGALG00000015016 12 0.78 - - - - - - - - - 0.780 solute carrier family 22 member 15 [Source:HGNC Symbol;Acc:HGNC:20301]
51. ENSGALG00000021386 ENSGALG00000021386 29 0.78 - - - - - - - - - 0.780
52. gga-mir-1556 ENSGALG00000025512 2 0.78 - - - - - - - - - 0.780 gga-mir-1556 [Source:miRBase;Acc:MI0007281]
53. ENSGALG00000023012 ENSGALG00000023012 2 0.78 - - - - - - - - - 0.780
54. ATXN1 ENSGALG00000012709 2 0.78 - - - - - - - - - 0.780 ataxin 1 [Source:HGNC Symbol;Acc:HGNC:10548]
55. CNTNAP5 ENSGALG00000011577 2 0.78 - - - - - - - - - 0.780 contactin associated protein like 5 [Source:NCBI gene;Acc:424231]
56. FOLH1 ENSGALG00000017234 9 0.78 - - - - - - - - - 0.780 folate hydrolase 1 [Source:HGNC Symbol;Acc:HGNC:3788]
57. BMP3 ENSGALG00000035052 3260 0.778 - - - - - - - - - 0.778 bone morphogenetic protein 3 [Source:NCBI gene;Acc:422581]
58. METRNL ENSGALG00000028354 25565 0.776 - - - - - - 0.776 - - - meteorin like, glial cell differentiation regulator [Source:HGNC Symbol;Acc:HGNC:27584]
59. SCIN ENSGALG00000010770 883 0.772 - - 0.772 - - - - - - - scinderin [Source:NCBI gene;Acc:420588]
60. RAB3GAP2 ENSGALG00000009503 36 0.768 - - - - - - - - - 0.768 RAB3 GTPase activating non-catalytic protein subunit 2 [Source:NCBI gene;Acc:421343]
61. CADM3 ENSGALG00000036925 1753 0.767 - - - - - - 0.767 - - - cell adhesion molecule 3 [Source:HGNC Symbol;Acc:HGNC:17601]
62. KCNJ15 ENSGALG00000016055 66 0.766 - - - - - - - - - 0.766 potassium voltage-gated channel subfamily J member 15 [Source:HGNC Symbol;Acc:HGNC:6261]
63. SCARF2 ENSGALG00000034560 6945 0.766 - - - - - - - - 0.766 - scavenger receptor class F member 2 [Source:HGNC Symbol;Acc:HGNC:19869]
64. MOV10 ENSGALG00000001558 244 0.764 - - - - - - - - - 0.764 Mov10 RISC complex RNA helicase [Source:NCBI gene;Acc:419872]
65. ECM2 ENSGALG00000004695 375 0.761 - - - - - - 0.761 - - - extracellular matrix protein 2 [Source:HGNC Symbol;Acc:HGNC:3154]
66. INSIG1 ENSGALG00000017394 693 0.76 - - - - - - - - - 0.760 insulin induced gene 1 [Source:NCBI gene;Acc:420442]
67. DCLRE1B ENSGALG00000028626 48 0.76 - - - - - - - - - 0.760 DNA cross-link repair 1B [Source:NCBI gene;Acc:428269]
68. ENSGALG00000028367 ENSGALG00000028367 102 0.758 - - - - - - - - - 0.758
69. SCARA5 ENSGALG00000016580 712 0.758 - - - - - - 0.758 - - - scavenger receptor class A member 5 [Source:HGNC Symbol;Acc:HGNC:28701]
70. ARHGAP39 ENSGALG00000001536 15 0.758 - - - - - - - - - 0.758 Rho GTPase activating protein 39, transcript variant X2
71. TXNRD1 ENSGALG00000035345 4784 0.757 - - - - - - - - - 0.757 Gallus gallus thioredoxin reductase 1 (TXNRD1), transcript variant 2, mRNA. [Source:RefSeq mRNA;Acc:NM_001352023]
72. PLXND1 ENSGALG00000008473 21 0.757 - - - - - - - - - 0.757 plexin D1 [Source:HGNC Symbol;Acc:HGNC:9107]
73. COLEC12 ENSGALG00000014910 5859 0.756 - - - - - - - - 0.756 - collectin subfamily member 12 [Source:NCBI gene;Acc:421061]
74. AIF1L ENSGALG00000029834 13866 0.754 - - - - - - 0.754 - - - allograft inflammatory factor 1 like [Source:HGNC Symbol;Acc:HGNC:28904]
75. BCMO1 BCMO1 35 0.753 - - - - - - - - - 0.753
76. PALM2 ENSGALG00000015655 20 0.753 - - - - - - - - - 0.753 paralemmin 2 [Source:HGNC Symbol;Acc:HGNC:15845]
77. MYF5 ENSGALG00000028091 1965 0.749 - - - - - - - - 0.749 - myogenic factor 5 [Source:NCBI gene;Acc:395633]
78. CPZ ENSGALG00000030209 8822 0.747 - - - - - - 0.747 - - - carboxypeptidase Z [Source:NCBI gene;Acc:395266]
79. EN1 ENSGALG00000042389 3051 0.745 - - 0.745 - - - - - - - engrailed homeobox 1 [Source:HGNC Symbol;Acc:HGNC:3342]
80. COBLL1 ENSGALG00000011068 111 0.745 - - - - - - - - - 0.745 cordon-bleu WH2 repeat protein like 1 [Source:HGNC Symbol;Acc:HGNC:23571]
81. CXCL13L2 ENSGALG00000010338 370 0.743 - - - - - - - - - 0.743 C-X-C motif chemokine ligand 13-like 2 [Source:NCBI gene;Acc:422510]
82. DPY19L4 ENSGALG00000039222 30 0.74 - - - - - - - - - 0.740 dpy-19 like 4 [Source:HGNC Symbol;Acc:HGNC:27829]
83. TNNC2 ENSGALG00000006835 2963 0.739 - - - - - - - - 0.739 - troponin C2, fast skeletal type [Source:NCBI gene;Acc:396434]
84. TMEM163 ENSGALG00000012190 72 0.739 - - 0.739 - - - - - - - transmembrane protein 163 [Source:HGNC Symbol;Acc:HGNC:25380]
85. PRMT8 ENSGALG00000013272 740 0.739 - - - - - - 0.739 - - - protein arginine methyltransferase 8 [Source:HGNC Symbol;Acc:HGNC:5188]
86. ENSGALG00000027568 ENSGALG00000027568 3 0.736 - - - - - - - - - 0.736
87. IRF8 ENSGALG00000005757 5 0.736 - - - - - - - - - 0.736 interferon regulatory factor 8 [Source:NCBI gene;Acc:396385]
88. GPR158 ENSGALG00000007667 111 0.735 - - - - - - - 0.735 - - G protein-coupled receptor 158 [Source:NCBI gene;Acc:100859400]
89. MATN4 ENSGALG00000004028 15 0.733 - - - - - - - - - 0.733 matrilin 4 [Source:HGNC Symbol;Acc:HGNC:6910]
90. OSBPL10 45 0.733 - - - - - - - - - 0.733 oxysterol binding protein like 10
91. C1QTNF3 ENSGALG00000027887 8646 0.732 - - 0.732 - - - - - - - C1q and tumor necrosis factor related protein 3, transcript variant X1
92. TF ENSGALG00000006453 14007 0.729 - - 0.729 - - - - - - - transferrin (ovotransferrin) [Source:NCBI gene;Acc:396241]
93. GRIA3 ENSGALG00000034109 436 0.728 - - - - - - 0.728 - - - glutamate ionotropic receptor AMPA type subunit 3 [Source:NCBI gene;Acc:396138]
94. ACBD7 ENSGALG00000019663 2328 0.727 - - 0.727 - - - - - - - acyl-CoA binding domain containing 7 [Source:HGNC Symbol;Acc:HGNC:17715]
95. CLDN20 ENSGALG00000027634 25 0.725 - - - - - - - - - 0.725 claudin 20 [Source:HGNC Symbol;Acc:HGNC:2042]
96. GAPVD1 ENSGALG00000000993 1988 0.725 - - - - - - - - - 0.725 GTPase activating protein and VPS9 domains 1 [Source:NCBI gene;Acc:417095]
97. LRRC31 ENSGALG00000023616 55 0.724 - - - - - - - - - 0.724 leucine rich repeat containing 31 [Source:HGNC Symbol;Acc:HGNC:26261]
98. S100A9 ENSGALG00000024272 103 0.723 - - - - - - - - - 0.723 S100 calcium binding protein A9 [Source:NCBI gene;Acc:426356]
99. PROK2 ENSGALG00000007785 55 0.722 - - - - - - 0.722 - - - prokineticin 2 [Source:HGNC Symbol;Acc:HGNC:18455]
100. RALGAPA2 240 0.72 - - - - - - - - - 0.720 Ral GTPase activating protein, alpha subunit 2 (catalytic), transcript variant X6

There are 16 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA