Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for SHANK1

Gene Name Gene ID Reads Annotation
SHANK1 ENSG00000161681 8 SH3 and multiple ankyrin repeat domains 1 [Source:HGNC Symbol;Acc:HGNC:15474]



Genes with expression patterns similar to SHANK1

Nr. Gene Name Gene ID Reads Σ scores 35d slice1 35d slice2 Annotation
1. SHANK1 ENSG00000161681 8 2 1.000 1.000 SH3 and multiple ankyrin repeat domains 1 [Source:HGNC Symbol;Acc:HGNC:15474]
2. SIGLEC5 ENSG00000105501 19 0.873 0.873 - sialic acid binding Ig like lectin 5 [Source:HGNC Symbol;Acc:HGNC:10874]
3. C8G ENSG00000176919 3 0.873 0.873 - complement C8 gamma chain [Source:HGNC Symbol;Acc:HGNC:1354]
4. SMCO1 ENSG00000214097 8 0.873 0.873 - single-pass membrane protein with coiled-coil domains 1 [Source:HGNC Symbol;Acc:HGNC:27407]
5. KIAA0125 7 0.873 0.873 - KIAA0125
6. FRG2 ENSG00000205097, ENSG00000274972, ENSG00000285063, ENSG00000285202 3 0.873 0.873 - FSHD region gene 2 [Source:HGNC Symbol;Acc:HGNC:19136]
7. C12orf40 ENSG00000180116 7 0.873 0.873 - chromosome 12 open reading frame 40 [Source:HGNC Symbol;Acc:HGNC:26846]
8. LOC202181 32 0.873 0.873 - SUMO interacting motifs containing 1 pseudogene
9. LOC101929897 7 0.873 0.873 - uncharacterized LOC101929897
10. FGF13-AS1 ENSG00000226031 6 0.873 0.873 - FGF13 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:44264]
11. PZP ENSG00000126838 6 0.873 0.873 - PZP, alpha-2-macroglobulin like [Source:HGNC Symbol;Acc:HGNC:9750]
12. CDC42P3 ENSG00000253971 4 0.873 0.873 - cell division cycle 42 pseudogene 3 [Source:HGNC Symbol;Acc:HGNC:44427]
13. MIR663AHG ENSG00000227195 3 0.873 0.873 - MIR663A host gene [Source:HGNC Symbol;Acc:HGNC:27662]
14. WDR49 ENSG00000174776 7 0.873 0.873 - WD repeat domain 49 [Source:HGNC Symbol;Acc:HGNC:26587]
15. TBR1 ENSG00000136535 4 0.873 0.873 - T-box, brain 1 [Source:HGNC Symbol;Acc:HGNC:11590]
16. LOC100289511 3 0.873 0.873 - uncharacterized LOC100289511
17. DPPA5 ENSG00000203909 8 0.873 0.873 - developmental pluripotency associated 5 [Source:HGNC Symbol;Acc:HGNC:19201]
18. LOC101927190 21 0.828 0.828 - uncharacterized LOC101927190
19. SYT9 ENSG00000170743 28 0.826 0.826 - synaptotagmin 9 [Source:HGNC Symbol;Acc:HGNC:19265]
20. MNX1-AS1 ENSG00000243479 10 0.823 0.823 - MNX1 antisense RNA 1 (head to head) [Source:HGNC Symbol;Acc:HGNC:48954]
21. CLEC1B ENSG00000165682 25 0.821 0.821 - C-type lectin domain family 1 member B [Source:HGNC Symbol;Acc:HGNC:24356]
22. C9orf41-AS1 ENSG00000203321 12 0.816 0.816 - C9orf41 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:51188]
23. ERN2 ENSG00000134398 17 0.812 0.812 - endoplasmic reticulum to nucleus signaling 2 [Source:HGNC Symbol;Acc:HGNC:16942]
24. LANCL3 ENSG00000147036 24 0.804 0.804 - LanC like 3 [Source:HGNC Symbol;Acc:HGNC:24767]
25. LOC643355 14 0.804 0.804 - uncharacterized LOC643355, transcript variant X1
26. LOC286059 7 0.801 0.801 - tumor necrosis factor receptor superfamily member 10d, decoy with truncated death domain pseudogene
27. RAMP1 ENSG00000132329 54 0.8 0.800 - receptor activity modifying protein 1 [Source:HGNC Symbol;Acc:HGNC:9843]
28. KIAA1257 ENSG00000114656 35 0.795 0.795 - KIAA1257 [Source:HGNC Symbol;Acc:HGNC:29231]
29. DPH6-AS1 66 0.79 0.790 - DPH6 antisense RNA 1 (head to head)
30. LOC100130539 LOC100130539 10 0.787 - 0.787
31. HIST1H2BJ ENSG00000124635 27 0.786 0.786 - histone cluster 1 H2B family member j [Source:HGNC Symbol;Acc:HGNC:4761]
32. LINC00314 ENSG00000178457 17 0.785 0.785 - long intergenic non-protein coding RNA 314 [Source:HGNC Symbol;Acc:HGNC:16622]
33. GGT3P ENSG00000197421 19 0.773 0.773 - gamma-glutamyltransferase 3 pseudogene [Source:HGNC Symbol;Acc:HGNC:4252]
34. SERPINE1 ENSG00000106366 17 0.77 0.770 - serpin family E member 1 [Source:HGNC Symbol;Acc:HGNC:8583]
35. VENTXP7 ENSG00000236380 6 0.768 0.768 - VENT homeobox pseudogene 7 [Source:HGNC Symbol;Acc:HGNC:13638]
36. LOC400927-CSNK1E 14 0.762 0.762 - LOC400927-CSNK1E readthrough
37. KLF8 ENSG00000102349 167 0.76 0.760 - Kruppel like factor 8 [Source:HGNC Symbol;Acc:HGNC:6351]
38. PSPN ENSG00000125650 11 0.75 0.750 - persephin [Source:HGNC Symbol;Acc:HGNC:9579]
39. LOC403323 16 0.747 0.747 - uncharacterized LOC403323, transcript variant 2
40. DHRS4L1 ENSG00000225766, ENSG00000285036 33 0.744 0.744 - dehydrogenase/reductase 4 like 1 [Source:HGNC Symbol;Acc:HGNC:19732]
41. Mar-10 Mar-10 2 0.739 - 0.739
42. LOC101928978 1 0.736 - 0.736 uncharacterized LOC101928978
43. SNX31 ENSG00000174226 1 0.736 - 0.736 sorting nexin 31 [Source:HGNC Symbol;Acc:HGNC:28605]
44. LINC00892 ENSG00000233093 1 0.736 - 0.736 long intergenic non-protein coding RNA 892 [Source:HGNC Symbol;Acc:HGNC:48578]
45. KCNU1 ENSG00000215262 2 0.736 - 0.736 potassium calcium-activated channel subfamily U member 1 [Source:HGNC Symbol;Acc:HGNC:18867]
46. GTPBP6_1 ENSG00000178605 1 0.736 - 0.736 GTP binding protein 6 (putative) [Source:HGNC Symbol;Acc:HGNC:30189]
47. VWA3A ENSG00000175267, ENSG00000283835 22 0.734 0.734 - von Willebrand factor A domain containing 3A [Source:HGNC Symbol;Acc:HGNC:27088]
48. LOC101928008 10 0.725 0.725 - uncharacterized LOC101928008
49. STK33 ENSG00000130413 596 0.724 0.724 - serine/threonine kinase 33 [Source:HGNC Symbol;Acc:HGNC:14568]
50. DRC1 ENSG00000157856 20 0.723 0.723 - dynein regulatory complex subunit 1 [Source:HGNC Symbol;Acc:HGNC:24245]
51. SNTG1 ENSG00000147481 10 0.723 0.723 - syntrophin gamma 1 [Source:HGNC Symbol;Acc:HGNC:13740]
52. LOC102724050 23 0.722 0.722 - uncharacterized LOC102724050, transcript variant 3
53. LOC100506444 15 0.722 - 0.722 uncharacterized LOC100506444
54. EGLN3 ENSG00000129521 72 0.721 0.721 - egl-9 family hypoxia inducible factor 3 [Source:HGNC Symbol;Acc:HGNC:14661]
55. C10orf55 ENSG00000222047 15 0.718 0.718 - chromosome 10 open reading frame 55 [Source:HGNC Symbol;Acc:HGNC:31008]
56. HIST1H3G ENSG00000273983 69 0.715 0.715 - histone cluster 1 H3 family member g [Source:HGNC Symbol;Acc:HGNC:4772]
57. LOC643711 2 0.712 - 0.712 platelet activating factor acetylhydrolase 1b catalytic subunit 2 pseudogene, transcript variant 2
58. SHC3 ENSG00000148082 75 0.706 0.706 - SHC adaptor protein 3 [Source:HGNC Symbol;Acc:HGNC:18181]
59. MFSD6 ENSG00000151690 35 0.705 0.705 - major facilitator superfamily domain containing 6 [Source:HGNC Symbol;Acc:HGNC:24711]
Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA