Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for SH3RF3

Gene Name Gene ID Reads Annotation
SH3RF3 ENSGALG00000016810 2169 SH3 domain containing ring finger 3 [Source:HGNC Symbol;Acc:HGNC:24699]











Genes with expression patterns similar to SH3RF3

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. SH3RF3 ENSGALG00000016810 2169 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 - SH3 domain containing ring finger 3 [Source:HGNC Symbol;Acc:HGNC:24699]
2. CHL1 ENSGALG00000037856 1565 1.731 - - - - - - 0.994 0.737 - - cell adhesion molecule L1 like [Source:HGNC Symbol;Acc:HGNC:1939]
3. RGMA ENSGALG00000039173 12874 1.506 - - 0.728 - - 0.778 - - - - repulsive guidance molecule family member a [Source:NCBI gene;Acc:395214]
4. POLR2C ENSGALG00000001168 10703 0.996 - - - - - - 0.996 - - - RNA polymerase II subunit C [Source:NCBI gene;Acc:415635]
5. MAPT ENSGALG00000000625 659 0.995 - - - - - - 0.995 - - - microtubule associated protein tau [Source:NCBI gene;Acc:426737]
6. LUZP2 ENSGALG00000030151 585 0.995 - - - - - - 0.995 - - - leucine zipper protein 2 [Source:NCBI gene;Acc:423001]
7. LHFPL2 ENSGALG00000004437 500 0.995 - - - - - - 0.995 - - - LHFPL tetraspan subfamily member 2 [Source:HGNC Symbol;Acc:HGNC:6588]
8. RPUSD4 ENSGALG00000024326 3788 0.995 - - - - - - 0.995 - - - RNA pseudouridylate synthase domain containing 4 [Source:HGNC Symbol;Acc:HGNC:25898]
9. CRAC1A CRAC1A 5265 0.995 - - - - - - 0.995 - - -
10. DNAJC10 ENSGALG00000008862 3114 0.995 - - - - - - 0.995 - - - DnaJ heat shock protein family (Hsp40) member C10 [Source:HGNC Symbol;Acc:HGNC:24637]
11. LYVE1 ENSGALG00000005643 1230 0.995 - - - - - - 0.995 - - - lymphatic vessel endothelial hyaluronan receptor 1 [Source:NCBI gene;Acc:423038]
12. SNAPIN ENSGALG00000026796 11155 0.995 - - - - - - 0.995 - - - SNAP associated protein [Source:HGNC Symbol;Acc:HGNC:17145]
13. CSDE1 ENSGALG00000002139 1683 0.995 - - - - - - 0.995 - - - cold shock domain containing E1 [Source:NCBI gene;Acc:419886]
14. SPINT1 ENSGALG00000008469 5735 0.994 - - - - - - 0.994 - - - serine peptidase inhibitor, Kunitz type 1, transcript variant X2
15. SAV1 ENSGALG00000012341 3313 0.994 - - - - - - 0.994 - - - salvador family WW domain containing protein 1 [Source:HGNC Symbol;Acc:HGNC:17795]
16. CCAR1 ENSGALG00000004108 13219 0.994 - - - - - - 0.994 - - - cell division cycle and apoptosis regulator 1 [Source:HGNC Symbol;Acc:HGNC:24236]
17. LOC425795 ENSGALG00000027696 2357 0.994 - - - - - - 0.994 - - - ectoderm-neural cortex protein 1-like, transcript variant X1
18. ZNF276 ENSGALG00000000513 2410 0.994 - - - - - - 0.994 - - - zinc finger protein 276 [Source:HGNC Symbol;Acc:HGNC:23330]
19. ATPAF2 ENSGALG00000004926 3393 0.994 - - - - - - 0.994 - - - ATP synthase mitochondrial F1 complex assembly factor 2 [Source:HGNC Symbol;Acc:HGNC:18802]
20. gga-mir-1723 ENSGALG00000025386 6662 0.993 - - - - - - 0.993 - - - gga-mir-1723 [Source:miRBase;Acc:MI0007460]
21. GSDMA ENSGALG00000013495 1650 0.992 - - - - - - 0.992 - - - gasdermin A [Source:NCBI gene;Acc:426132]
22. DIS3 ENSGALG00000016930 3696 0.992 - - - - - - 0.992 - - - DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease [Source:HGNC Symbol;Acc:HGNC:20604]
23. GDPD4 ENSGALG00000000690 824 0.992 - - - - - - 0.992 - - - glycerophosphodiester phosphodiesterase domain containing 4 [Source:HGNC Symbol;Acc:HGNC:24849]
24. ENSGALG00000006730 ENSGALG00000006730 3695 0.992 - - - - - - 0.992 - - -
25. NOB1 ENSGALG00000000693 15442 0.991 - - - - - - 0.991 - - - NIN1 (RPN12) binding protein 1 homolog [Source:HGNC Symbol;Acc:HGNC:29540]
26. GALNTL4 GALNTL4 3548 0.991 - - - - - - 0.991 - - -
27. MMADHC ENSGALG00000012473 9026 0.991 - - - - - - 0.991 - - - methylmalonic aciduria and homocystinuria, cblD type [Source:NCBI gene;Acc:424311]
28. C6H10ORF32 C6H10ORF32 7694 0.991 - - - - - - 0.991 - - -
29. GCAT ENSGALG00000012312 7906 0.991 - - - - - - 0.991 - - - glycine C-acetyltransferase [Source:HGNC Symbol;Acc:HGNC:4188]
30. CCDC90B ENSGALG00000037072 5088 0.991 - - - - - - 0.991 - - - coiled-coil domain containing 90B [Source:HGNC Symbol;Acc:HGNC:28108]
31. GLT8D1 ENSGALG00000001642 4232 0.991 - - - - - - 0.991 - - - glycosyltransferase 8 domain containing 1 [Source:NCBI gene;Acc:415898]
32. PRKG1 ENSGALG00000003805 4654 0.99 - - - - - - 0.990 - - - protein kinase cGMP-dependent 1 [Source:HGNC Symbol;Acc:HGNC:9414]
33. FGD5 ENSGALG00000008546 4031 0.99 - - - - - - 0.990 - - - FYVE, RhoGEF and PH domain containing 5 [Source:HGNC Symbol;Acc:HGNC:19117]
34. APITD1 APITD1 11830 0.989 - - - - - - 0.989 - - -
35. TTF1 4214 0.988 - - - - - - 0.988 - - - transcription termination factor 1
36. LOC424109 ENSGALG00000008738 3932 0.988 - - - - - - 0.988 - - - alpha-aspartyl dipeptidase
37. MYBL2 ENSGALG00000003503 15875 0.987 - - - - - - 0.987 - - - MYB proto-oncogene like 2 [Source:NCBI gene;Acc:396258]
38. COMMD8 ENSGALG00000026279 13509 0.986 - - - - - - 0.986 - - - COMM domain containing 8 [Source:NCBI gene;Acc:422769]
39. USO1 ENSGALG00000010878 9506 0.986 - - - - - - 0.986 - - - USO1 vesicle transport factor [Source:NCBI gene;Acc:422575]
40. FHL3 ENSGALG00000035187 9753 0.985 - - - - - - 0.985 - - - four and a half LIM domains 3 [Source:HGNC Symbol;Acc:HGNC:3704]
41. CTNNBL1 ENSGALG00000006817 6765 0.983 - - - - - - 0.983 - - - catenin beta like 1 [Source:HGNC Symbol;Acc:HGNC:15879]
42. PSMD13 ENSGALG00000043684 14720 0.983 - - - - - - 0.983 - - - proteasome 26S subunit, non-ATPase 13 [Source:HGNC Symbol;Acc:HGNC:9558]
43. SERBP1 ENSGALG00000011229 30489 0.983 - - - - - - 0.983 - - - SERPINE1 mRNA binding protein 1 [Source:NCBI gene;Acc:424706]
44. TP53INP1 ENSGALG00000041353 6890 0.981 - - - - - - 0.981 - - - tumor protein p53 inducible nuclear protein 1 [Source:NCBI gene;Acc:420232]
45. MRPS34 ENSGALG00000001792 14262 0.98 - - - - - - 0.980 - - - mitochondrial ribosomal protein S34 [Source:NCBI gene;Acc:426987]
46. EPHA3 ENSGALG00000015403 9811 0.978 - - - - - - 0.978 - - - EPH receptor A3 [Source:NCBI gene;Acc:396402]
47. PPP3CB ENSGALG00000005243 8794 0.977 - - - - - - 0.977 - - - Gallus gallus protein phosphatase 3 catalytic subunit beta (PPP3CB), mRNA. [Source:RefSeq mRNA;Acc:NM_001030340]
48. ANLN 10479 0.977 - - - - - - 0.977 - - - anillin actin binding protein, transcript variant X2
49. MRPS36 ENSGALG00000014789 7584 0.976 - - - - - - 0.976 - - - mitochondrial ribosomal protein S36 [Source:HGNC Symbol;Acc:HGNC:16631]
50. POLB ENSGALG00000040828 7462 0.975 - - - - - - 0.975 - - - DNA polymerase beta [Source:HGNC Symbol;Acc:HGNC:9174]
51. ACTR6 ENSGALG00000040976 31271 0.974 - - - - - - 0.974 - - - ARP6 actin-related protein 6 homolog [Source:NCBI gene;Acc:395348]
52. RNF13 ENSGALG00000010411 8749 0.974 - - - - - - 0.974 - - - ring finger protein 13 [Source:NCBI gene;Acc:396303]
53. MRPS15 ENSGALG00000044433 15356 0.973 - - - - - - 0.973 - - - mitochondrial ribosomal protein S15 [Source:HGNC Symbol;Acc:HGNC:14504]
54. CNBP 42704 0.972 - - - - - - 0.972 - - - CCHC-type zinc finger nucleic acid binding protein, transcript variant X7
55. CDC5L ENSGALG00000016704 22893 0.971 - - - - - - 0.971 - - - cell division cycle 5 like [Source:HGNC Symbol;Acc:HGNC:1743]
56. ABRACL ENSGALG00000013826 19445 0.97 - - - - - - 0.970 - - - ABRA C-terminal like [Source:NCBI gene;Acc:770205]
57. MOB4 ENSGALG00000008128 10322 0.965 - - - - - - 0.965 - - - MOB family member 4, phocein [Source:NCBI gene;Acc:429007]
58. MED1 ENSGALG00000001708 9556 0.963 - - - - - - 0.963 - - - mediator complex subunit 1 [Source:HGNC Symbol;Acc:HGNC:9234]
59. ENSGALG00000013825 ENSGALG00000013825 16473 0.961 - - - - - - 0.961 - - -
60. RPF1 ENSGALG00000008796 9809 0.961 - - - - - - 0.961 - - - ribosome production factor 1 homolog
61. EXOSC7 ENSGALG00000030084 8654 0.958 - - - - - - 0.958 - - - exosome component 7 [Source:NCBI gene;Acc:420704]
62. TRIB2 ENSGALG00000016457 17641 0.958 - - - - - - 0.958 - - - tribbles pseudokinase 2 [Source:NCBI gene;Acc:378919]
63. PELI1 ENSGALG00000008837 11561 0.953 - - - - - - 0.953 - - - pellino E3 ubiquitin protein ligase 1 [Source:NCBI gene;Acc:421279]
64. ZDHHC6 ENSGALG00000008870 16575 0.951 - - - - - - 0.951 - - - zinc finger DHHC-type containing 6 [Source:HGNC Symbol;Acc:HGNC:19160]
65. BUB3 ENSGALG00000009681 36055 0.949 - - - - - - 0.949 - - - BUB3, mitotic checkpoint protein [Source:NCBI gene;Acc:423949]
66. LOC407092 ENSGALG00000013809 10706 0.948 - - - - - - 0.948 - - - AD012Z, transcript variant X5
67. EZH2 ENSGALG00000043399 15881 0.944 - - - - - - 0.944 - - - enhancer of zeste 2 polycomb repressive complex 2 subunit [Source:HGNC Symbol;Acc:HGNC:3527]
68. CCT5 ENSGALG00000013041 56190 0.942 - - - - - - 0.942 - - - chaperonin containing TCP1 subunit 5 [Source:NCBI gene;Acc:420930]
69. TAF12 ENSGALG00000000991 8709 0.94 - - - - - - 0.940 - - - TATA-box binding protein associated factor 12 [Source:NCBI gene;Acc:419585]
70. MRPS26 ENSGALG00000014118 27422 0.939 - - - - - - 0.939 - - - mitochondrial ribosomal protein S26 [Source:NCBI gene;Acc:426561]
71. SNX17 ENSGALG00000032468 13519 0.939 - - - - - - 0.939 - - - sorting nexin 17 [Source:HGNC Symbol;Acc:HGNC:14979]
72. STAG2 ENSGALG00000008482 13629 0.936 - - - - - - 0.936 - - - stromal antigen 2 [Source:HGNC Symbol;Acc:HGNC:11355]
73. VDAC3 ENSGALG00000041463 21595 0.93 - - - - - - 0.930 - - - voltage dependent anion channel 3, transcript variant X9
74. DDX18 ENSGALG00000012147 12463 0.929 - - - - - - 0.929 - - - DEAD-box helicase 18 [Source:HGNC Symbol;Acc:HGNC:2741]
75. TPI1 ENSGALG00000014526 43273 0.928 - - - - - - 0.928 - - - triosephosphate isomerase 1 [Source:NCBI gene;Acc:396435]
76. TBL1X ENSGALG00000040006 28597 0.925 - - - - - - 0.925 - - - transducin beta like 1 X-linked [Source:NCBI gene;Acc:426045]
77. ENSGALG00000000360 ENSGALG00000000360 15320 0.921 - - - - - - 0.921 - - -
78. PRDX1 ENSGALG00000010243 151918 0.921 - - - - - - 0.921 - - - peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
79. WLS ENSGALG00000011238 20969 0.916 - - - - - - 0.916 - - - wntless Wnt ligand secretion mediator [Source:NCBI gene;Acc:424707]
80. TRA2A ENSGALG00000010973 37101 0.911 - - - - - - 0.911 - - - transformer 2 alpha homolog [Source:NCBI gene;Acc:420618]
81. HDLBP ENSGALG00000005823 24636 0.904 - - - - - - 0.904 - - - high density lipoprotein binding protein [Source:NCBI gene;Acc:395984]
82. SNRPB2 28675 0.893 - - - - - - 0.893 - - - small nuclear ribonucleoprotein polypeptide B2
83. CHPKCI CHPKCI 36217 0.875 - - - - - - 0.875 - - -
84. MGEA5 116 0.872 - - - - - - - 0.872 - - meningioma expressed antigen 5 (hyaluronidase), transcript variant X1
85. ARGLU1 ENSGALG00000016855 25633 0.856 - - - - - - 0.856 - - - arginine and glutamate rich 1 [Source:NCBI gene;Acc:418765]
86. SAMSN1 ENSGALG00000040926 88 0.854 - - - - - - - 0.854 - - SAM domain, SH3 domain and nuclear localization signals 1 [Source:NCBI gene;Acc:418470]
87. CHRNA5 ENSGALG00000003021 83 0.853 - - - - - - - 0.853 - - cholinergic receptor nicotinic alpha 5 subunit [Source:NCBI gene;Acc:386577]
88. SYCP3 ENSGALG00000012766 70 0.845 - - - - - - - 0.845 - - synaptonemal complex protein 3, transcript variant X2
89. EP4 EP4 486 0.842 - - - - - - - 0.842 - -
90. RPS25 ENSGALG00000007699 156127 0.84 - - - - - - 0.840 - - - ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
91. SH3GL1 ENSGALG00000001121 159 0.835 - - - - - - - 0.835 - - SH3 domain containing GRB2 like 1, endophilin A2 [Source:NCBI gene;Acc:395202]
92. CDC27 ENSGALG00000000596 12014 0.835 - - - - - - 0.835 - - - cell division cycle 27 [Source:NCBI gene;Acc:419960]
93. CYP2J22 ENSGALG00000011394 76 0.835 - - - - - - - 0.835 - - Gallus gallus cytochrome P450, family 2, subfamily J, polypeptide 22 (CYP2J22), mRNA. [Source:RefSeq mRNA;Acc:NM_001329480]
94. NRP2 ENSGALG00000008621 29 0.834 - - - - - - - 0.834 - - neuropilin 2 [Source:NCBI gene;Acc:374157]
95. SAAL1 ENSGALG00000026111 8340 0.831 - - - - - - 0.831 - - - serum amyloid A like 1
96. PPP2CA_1 ENSGALG00000006462 3170 0.826 - - - - - - - 0.826 - - protein phosphatase 2 catalytic subunit alpha [Source:NCBI gene;Acc:416318]
97. PDXK ENSGALG00000016205 26 0.825 - - - - - - - 0.825 - - pyridoxal kinase [Source:NCBI gene;Acc:418549]
98. SVCT2 SVCT2 400 0.825 - - - - - - - 0.825 - -
99. HBE 329974 0.824 - - - - - - 0.824 - - - hemoglobin subunit epsilon
100. gga-mir-454 ENSGALG00000033526 22 0.822 - - - - - - - 0.822 - - gga-mir-454 [Source:miRBase;Acc:MI0006984]

There are 96 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA