Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for SF3B4

Gene Name Gene ID Reads Annotation
SF3B4 ENSGALG00000013352 2054 splicing factor 3b subunit 4 [Source:HGNC Symbol;Acc:HGNC:10771]











Genes with expression patterns similar to SF3B4

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. SF3B4 ENSGALG00000013352 2054 9 - 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 splicing factor 3b subunit 4 [Source:HGNC Symbol;Acc:HGNC:10771]
2. ARHGAP21 ENSGALG00000007721 3961 0.858 - - - - - - 0.858 - - - Rho GTPase activating protein 21 [Source:NCBI gene;Acc:420500]
3. STXBP5L ENSGALG00000032361 41 0.821 - - 0.821 - - - - - - - syntaxin binding protein 5 like [Source:HGNC Symbol;Acc:HGNC:30757]
4. CARS ENSGALG00000006427 7660 0.815 - - - - - - 0.815 - - - cysteinyl-tRNA synthetase [Source:NCBI gene;Acc:423086]
5. ANGPTL4 ENSGALG00000000619 1732 0.814 - - - - - - 0.814 - - - angiopoietin like 4 [Source:HGNC Symbol;Acc:HGNC:16039]
6. TWF2 ENSGALG00000003977 6597 0.786 - - - - 0.786 - - - - - twinfilin actin binding protein 2 [Source:NCBI gene;Acc:415940]
7. ZFYVE9 ENSGALG00000010613 2421 0.774 - - - - - - - 0.774 - - zinc finger FYVE-type containing 9 [Source:HGNC Symbol;Acc:HGNC:6775]
8. IGBP1 ENSGALG00000044628 9200 0.771 - - - - - - 0.771 - - - immunoglobulin (CD79A) binding protein 1, transcript variant X3
9. SOX18 ENSGALG00000034118 5453 0.769 - - - - - - - 0.769 - - SRY-box 18 [Source:NCBI gene;Acc:374200]
10. CNOT11 ENSGALG00000039563 11251 0.767 - - - - - - - 0.767 - - CCR4-NOT transcription complex subunit 11
11. POLR3E ENSGALG00000007008 4010 0.764 - - - - - - - 0.764 - - RNA polymerase III subunit E [Source:HGNC Symbol;Acc:HGNC:30347]
12. E2F7 ENSGALG00000031340 3430 0.763 - - - - - - - 0.763 - - E2F transcription factor 7 [Source:HGNC Symbol;Acc:HGNC:23820]
13. ENSGALG00000006784 ENSGALG00000006784 1926 0.761 - - - - - - 0.761 - - -
14. WNK1 ENSGALG00000012992 67 0.76 - - 0.760 - - - - - - - WNK lysine deficient protein kinase 1 [Source:HGNC Symbol;Acc:HGNC:14540]
15. SAFB2 ENSGALG00000001948 10238 0.759 - - - - - - 0.759 - - - scaffold attachment factor B2, transcript variant X6
16. LRRC40 ENSGALG00000011301 3409 0.757 - - - - - - 0.757 - - - leucine rich repeat containing 40 [Source:NCBI gene;Acc:424713]
17. ENSGALG00000009771 ENSGALG00000009771 10273 0.756 - - - - - - 0.756 - - -
18. PAK3 ENSGALG00000008058 234 0.754 - - 0.754 - - - - - - - p21 (RAC1) activated kinase 3 [Source:HGNC Symbol;Acc:HGNC:8592]
19. DPP7 ENSGALG00000038145 4888 0.752 - - - - 0.752 - - - - - dipeptidyl peptidase 7 [Source:HGNC Symbol;Acc:HGNC:14892]
20. ELOVL1 ENSGALG00000009988 4000 0.752 - - - - 0.752 - - - - - ELOVL fatty acid elongase 1 [Source:NCBI gene;Acc:424564]
21. ABCD2 ENSGALG00000042554 1607 0.752 - - - - 0.752 - - - - - ATP binding cassette subfamily D member 2 [Source:NCBI gene;Acc:417694]
22. TIMM8A ENSGALG00000004963 14263 0.751 - - - - - - 0.751 - - - translocase of inner mitochondrial membrane 8A [Source:NCBI gene;Acc:422190]
23. PLK1 ENSGALG00000006110 12892 0.75 - - - - - - - 0.750 - - polo like kinase 1 [Source:NCBI gene;Acc:416575]
24. PARVA ENSGALG00000005438 91 0.75 - - 0.750 - - - - - - - parvin alpha [Source:HGNC Symbol;Acc:HGNC:14652]
25. KBP ENSGALG00000001172 3444 0.747 - - - - - - - 0.747 - - kainate binding protein [Source:NCBI gene;Acc:396300]
26. MTA1 ENSGALG00000002803 11572 0.747 - - - - - - 0.747 - - - metastasis associated 1 [Source:NCBI gene;Acc:429060]
27. MGAT4B ENSGALG00000005924 2663 0.746 - - - - - - 0.746 - - - alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B [Source:HGNC Symbol;Acc:HGNC:7048]
28. DNMT3B ENSGALG00000041461 12959 0.746 - - - - - - - 0.746 - - DNA methyltransferase 3 beta [Source:NCBI gene;Acc:419287]
29. SRSF5 ENSGALG00000009421 8502 0.745 - - - - - - - 0.745 - - serine and arginine rich splicing factor 5 [Source:NCBI gene;Acc:423258]
30. GM2A ENSGALG00000027534 3141 0.745 - - - - - - 0.745 - - - GM2 ganglioside activator [Source:HGNC Symbol;Acc:HGNC:4367]
31. METAP2 ENSGALG00000011377 16311 0.744 - - - - - - 0.744 - - - methionyl aminopeptidase 2 [Source:NCBI gene;Acc:417912]
32. PPP1R2 ENSGALG00000029789 11594 0.744 - - - - - - 0.744 - - - protein phosphatase 1 regulatory inhibitor subunit 2 [Source:NCBI gene;Acc:424894]
33. MAP3K7 ENSGALG00000015596 15164 0.744 - - - - - - 0.744 - - - mitogen-activated protein kinase kinase kinase 7 [Source:HGNC Symbol;Acc:HGNC:6859]
34. ILF2 ENSGALG00000011570 23050 0.742 - - - - - - 0.742 - - - interleukin enhancer binding factor 2 [Source:HGNC Symbol;Acc:HGNC:6037]
35. DCAF17 ENSGALG00000037327 1069 0.742 - - - - - - - 0.742 - - DDB1 and CUL4 associated factor 17 [Source:HGNC Symbol;Acc:HGNC:25784]
36. NDUFAB1 ENSGALG00000006073 40467 0.741 - - - - - - 0.741 - - - NADH:ubiquinone oxidoreductase subunit AB1 [Source:HGNC Symbol;Acc:HGNC:7694]
37. BNIP3L ENSGALG00000043405 10316 0.741 - - - - - - 0.741 - - - BCL2 interacting protein 3 like [Source:NCBI gene;Acc:419522]
38. TPRG1L ENSGALG00000001024 9809 0.74 - - - - - - 0.740 - - - tumor protein p63 regulated 1 like [Source:HGNC Symbol;Acc:HGNC:27007]
39. DPYSL2 ENSGALG00000000227 9668 0.74 - - - - - - 0.740 - - - dihydropyrimidinase like 2 [Source:NCBI gene;Acc:395155]
40. FLCN ENSGALG00000004816 4101 0.74 - - - - 0.740 - - - - - folliculin, transcript variant X1
41. SIPA1L2 ENSGALG00000037506 3651 0.739 - - - - - - 0.739 - - - signal induced proliferation associated 1 like 2 [Source:HGNC Symbol;Acc:HGNC:23800]
42. TRIM8 ENSGALG00000036785 5304 0.739 - - - - - - 0.739 - - - tripartite motif containing 8 [Source:NCBI gene;Acc:423864]
43. PTRH2 ENSGALG00000005150 4756 0.738 - - - - - - - 0.738 - - peptidyl-tRNA hydrolase 2 [Source:NCBI gene;Acc:417634]
44. GNAI2 ENSGALG00000035645 9535 0.737 - - - - - - 0.737 - - - G protein subunit alpha i2 [Source:HGNC Symbol;Acc:HGNC:4385]
45. C4H4ORF41 C4H4ORF41 1520 0.736 - - 0.736 - - - - - - -
46. KIF11 ENSGALG00000030597 5528 0.735 - - - - - - - 0.735 - - kinesin family member 11 [Source:NCBI gene;Acc:423809]
47. C26H6ORF89 C26H6ORF89 1826 0.733 - - - - 0.733 - - - - -
48. PHF2 ENSGALG00000039208 2003 0.732 - - - - - - 0.732 - - - PHD finger protein 2 [Source:HGNC Symbol;Acc:HGNC:8920]
49. ENSGALG00000006730 ENSGALG00000006730 3695 0.732 - - - - - - - 0.732 - -
50. PTK7 ENSGALG00000008609 8081 0.731 - - - - - - 0.731 - - - protein tyrosine kinase 7 (inactive) [Source:NCBI gene;Acc:421257]
51. NCBP2_1 ENSGALG00000006843 7170 0.731 - - - - - - - 0.731 - - nuclear cap binding protein subunit 2, 20kDa [Source:NCBI gene;Acc:424889]
52. RUFY2 1442 0.73 - - - - - - 0.730 - - - RUN and FYVE domain containing 2, transcript variant X1
53. CIT ENSGALG00000007354 150 0.73 - - 0.730 - - - - - - - citron rho-interacting serine/threonine kinase [Source:HGNC Symbol;Acc:HGNC:1985]
54. KIF18B ENSGALG00000031553 3192 0.73 - - - - 0.730 - - - - - kinesin family member 18B [Source:NCBI gene;Acc:419968]
55. RBP5 ENSGALG00000014662 31268 0.729 - - - - - - 0.729 - - - retinol binding protein 5 [Source:NCBI gene;Acc:418296]
56. SRF ENSGALG00000032029 6983 0.729 - - - - - - 0.729 - - - serum response factor [Source:NCBI gene;Acc:396103]
57. RIT1 ENSGALG00000014647 7174 0.728 - - - - - - - 0.728 - - Ras like without CAAX 1 [Source:NCBI gene;Acc:425068]
58. AN1ZNF5L ENSGALG00000014589 21148 0.727 - - - - - - 0.727 - - - AN1-type zinc finger protein 5-like, transcript variant X2
59. PTX3 ENSGALG00000028284 2984 0.725 - - - - 0.725 - - - - - pentraxin 3 [Source:NCBI gene;Acc:548626]
60. PI4KA ENSGALG00000040756 3973 0.725 - - - - 0.725 - - - - - phosphatidylinositol 4-kinase alpha [Source:HGNC Symbol;Acc:HGNC:8983]
61. SDHD ENSGALG00000007878 25129 0.725 - - - - - - 0.725 - - - succinate dehydrogenase complex subunit D [Source:NCBI gene;Acc:419793]
62. IGF2BP1 ENSGALG00000041204 6420 0.724 - - - - - - 0.724 - - - insulin like growth factor 2 mRNA binding protein 1 [Source:NCBI gene;Acc:395953]
63. PACS1 ENSGALG00000008567 1423 0.724 - - - - - - - 0.724 - - phosphofurin acidic cluster sorting protein 1, transcript variant X3
64. ENSGALG00000021344 ENSGALG00000021344 50 0.724 - - 0.724 - - - - - - -
65. C1QBP ENSGALG00000001654 34814 0.723 - - - - - - 0.723 - - - complement C1q binding protein [Source:HGNC Symbol;Acc:HGNC:1243]
66. CEP78 ENSGALG00000015179 5227 0.723 - - - - - - 0.723 - - - centrosomal protein 78 [Source:HGNC Symbol;Acc:HGNC:25740]
67. HOMER3_1 ENSGALG00000003058, ENSGALG00000003074 1364 0.723 - - - - - - - 0.723 - - homer scaffolding protein 3, transcript variant X4
68. CDC42BPB ENSGALG00000011432 8220 0.723 - - - - - - 0.723 - - - CDC42 binding protein kinase beta [Source:HGNC Symbol;Acc:HGNC:1738]
69. ANLN 10479 0.723 - - - - - - - 0.723 - - anillin actin binding protein, transcript variant X2
70. PCNP ENSGALG00000015330 15750 0.722 - - - - 0.722 - - - - - PEST proteolytic signal containing nuclear protein [Source:NCBI gene;Acc:418398]
71. SNRNP35 ENSGALG00000003318 1253 0.721 - - - - 0.721 - - - - - small nuclear ribonucleoprotein U11/U12 subunit 35 [Source:NCBI gene;Acc:416823]
72. HBB HBB 7552 0.721 - - 0.721 - - - - - - -
73. GXYLT1 ENSGALG00000009532 5682 0.721 - - - - - - - 0.721 - - glucoside xylosyltransferase 1 [Source:NCBI gene;Acc:417789]
74. UFD1L 12964 0.719 - - - - 0.719 - - - - - ubiquitin fusion degradation 1 like (yeast)
75. SNRNP40 ENSGALG00000000615 32298 0.719 - - - - - - 0.719 - - - small nuclear ribonucleoprotein U5 subunit 40 [Source:NCBI gene;Acc:419556]
76. DCTN4 ENSGALG00000004534 8442 0.719 - - - - - - - 0.719 - - dynactin subunit 4 [Source:HGNC Symbol;Acc:HGNC:15518]
77. F F 3639 0.718 - - - - - - - 0.718 - -
78. LOC100857512 ENSGALG00000026070 561 0.718 - - 0.718 - - - - - - - death-associated protein kinase 2-like, transcript variant X2
79. CLPX ENSGALG00000007289 6348 0.718 - - - - - - 0.718 - - - caseinolytic mitochondrial matrix peptidase chaperone subunit [Source:NCBI gene;Acc:415527]
80. TMEM115 ENSGALG00000026965 13050 0.718 - - - - - - 0.718 - - - transmembrane protein 115 [Source:HGNC Symbol;Acc:HGNC:30055]
81. NAT9 ENSGALG00000007723 2098 0.718 - - - - 0.718 - - - - - N-acetyltransferase 9 (putative), transcript variant X7
82. TMEM184C ENSGALG00000010019 7856 0.717 - - - - - - 0.717 - - - transmembrane protein 184C [Source:NCBI gene;Acc:422469]
83. MBSP MBSP 5634 0.716 - - - - - - 0.716 - - -
84. NCAPH ENSGALG00000032270 2103 0.716 - - 0.716 - - - - - - - non-SMC condensin I complex subunit H [Source:NCBI gene;Acc:425304]
85. RRP1B ENSGALG00000035696 12309 0.716 - - - - - - 0.716 - - - ribosomal RNA processing 1B [Source:NCBI gene;Acc:425237]
86. CFDP1 ENSGALG00000002853 8562 0.715 - - - - - - - 0.715 - - craniofacial development protein 1 [Source:NCBI gene;Acc:374073]
87. CHMP6 ENSGALG00000026428 18026 0.715 - - - - - - 0.715 - - - charged multivesicular body protein 6 [Source:NCBI gene;Acc:428673]
88. UBALD1 ENSGALG00000007619 8536 0.714 - - - - - - 0.714 - - - UBA like domain containing 1 [Source:HGNC Symbol;Acc:HGNC:29576]
89. PPP1CC ENSGALG00000004571 14748 0.714 - - - - 0.714 - - - - - protein phosphatase 1 catalytic subunit gamma [Source:NCBI gene;Acc:416872]
90. RNF34 ENSGALG00000004190 5942 0.714 - - - - - - - 0.714 - - ring finger protein 34 [Source:NCBI gene;Acc:416843]
91. RIOK1 ENSGALG00000012795 4658 0.714 - - - - - - 0.714 - - - RIO kinase 1 [Source:HGNC Symbol;Acc:HGNC:18656]
92. ANKRD40L ENSGALG00000026189 887 0.714 - - - - - - 0.714 - - - ankyrin repeat domain-containing protein 40-like, transcript variant X5
93. TAP1 ENSGALG00000035075 54 0.714 - - 0.714 - - - - - - - transporter 1, ATP-binding cassette, sub-family B (MDR/TAP) [Source:NCBI gene;Acc:427727]
94. NUMB ENSGALG00000009300 4220 0.714 - - - - - - - 0.714 - - NUMB, endocytic adaptor protein [Source:NCBI gene;Acc:395639]
95. ENSGALG00000006865 ENSGALG00000006865 307 0.713 - - 0.713 - - - - - - -
96. TAF2 ENSGALG00000043193 6311 0.713 - - - - - - - 0.713 - - TATA-box binding protein associated factor 2 [Source:NCBI gene;Acc:428389]
97. KCNB1 ENSGALG00000004758 620 0.713 - - - - 0.713 - - - - - potassium voltage-gated channel subfamily B member 1 [Source:HGNC Symbol;Acc:HGNC:6231]
98. ACTN1 ENSGALG00000042458 10477 0.712 - - - - - - 0.712 - - - actinin, alpha 1 [Source:NCBI gene;Acc:373918]
99. ASH2L ENSGALG00000003233 4814 0.712 - - - - - - - 0.712 - - ASH2 like, histone lysine methyltransferase complex subunit [Source:NCBI gene;Acc:426774]
100. TRIAP1 ENSGALG00000007199 4921 0.712 - - - - - - 0.712 - - - TP53 regulated inhibitor of apoptosis 1 [Source:NCBI gene;Acc:416977]

There are 46 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA