Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for SF3B1

Gene Name Gene ID Reads Annotation
SF3B1 ENSGALG00000008038 30161 splicing factor 3b subunit 1 [Source:HGNC Symbol;Acc:HGNC:10768]











Genes with expression patterns similar to SF3B1

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. SF3B1 ENSGALG00000008038 30161 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 splicing factor 3b subunit 1 [Source:HGNC Symbol;Acc:HGNC:10768]
2. PKP2 ENSGALG00000012913 2547 1.48 - - - - - - - 0.778 0.702 - plakophilin 2 [Source:HGNC Symbol;Acc:HGNC:9024]
3. ENSGALG00000016007 ENSGALG00000016007 62448 1.456 - - - - 0.750 - 0.706 - - -
4. NUPL1 NUPL1 8197 1.438 - - - - 0.704 - - 0.734 - -
5. DCUN1D1 ENSGALG00000008807 6545 0.941 - - - - - - - 0.941 - - defective in cullin neddylation 1 domain containing 1 [Source:NCBI gene;Acc:424963]
6. RAD51AP1 ENSGALG00000017290 3807 0.929 - - - - - - - 0.929 - - RAD51 associated protein 1 [Source:HGNC Symbol;Acc:HGNC:16956]
7. TCOF1 ENSGALG00000005535 24554 0.884 - - - - - - 0.884 - - - treacle ribosome biogenesis factor 1 [Source:NCBI gene;Acc:416276]
8. PI4KA ENSGALG00000040756 3973 0.848 - - - - - - - 0.848 - - phosphatidylinositol 4-kinase alpha [Source:HGNC Symbol;Acc:HGNC:8983]
9. C3H6ORF120 C3H6ORF120 2712 0.847 - - - - - - - 0.847 - -
10. SDAD1 ENSGALG00000011543 5191 0.847 - - - - - - - 0.847 - - SDA1 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:25537]
11. UBQLN1 ENSGALG00000012585 5158 0.846 - - - - - - - 0.846 - - ubiquilin 1 [Source:HGNC Symbol;Acc:HGNC:12508]
12. RRAGD ENSGALG00000026971 2429 0.846 - - - - - - - 0.846 - - Ras related GTP binding D [Source:HGNC Symbol;Acc:HGNC:19903]
13. CDC123 ENSGALG00000014038 1418 0.846 - - - - - - - 0.846 - - cell division cycle 123 [Source:HGNC Symbol;Acc:HGNC:16827]
14. CUTC ENSGALG00000037283 2530 0.846 - - - - - - - 0.846 - - cutC copper transporter [Source:NCBI gene;Acc:423829]
15. TMEFF1 ENSGALG00000013212 4222 0.846 - - - - - - - 0.846 - - transmembrane protein with EGF-like and two follistatin-like domains 1
16. ACTR10 ENSGALG00000012041 2752 0.846 - - - - - - - 0.846 - - actin-related protein 10 homolog [Source:NCBI gene;Acc:423543]
17. LYPLA2 ENSGALG00000004002 3939 0.846 - - - - - - - 0.846 - - lysophospholipase II [Source:NCBI gene;Acc:419685]
18. ENSGALG00000004643 ENSGALG00000004643 2297 0.846 - - - - - - - 0.846 - -
19. PHF12 ENSGALG00000031368 1960 0.846 - - - - - - - 0.846 - - PHD finger protein 12 [Source:HGNC Symbol;Acc:HGNC:20816]
20. HIC2 ENSGALG00000033416 4051 0.846 - - - - - - - 0.846 - - hypermethylated in cancer 2 [Source:NCBI gene;Acc:416768]
21. SOCS5 ENSGALG00000010016 1134 0.846 - - - - - - - 0.846 - - suppressor of cytokine signaling 5 [Source:NCBI gene;Acc:428570]
22. SNAI1 ENSGALG00000008018 3930 0.846 - - - - - - - 0.846 - - snail family transcriptional repressor 1 [Source:NCBI gene;Acc:396047]
23. RFWD3 2315 0.846 - - - - - - - 0.846 - - ring finger and WD repeat domain 3
24. MFN1 ENSGALG00000041873 4170 0.846 - - - - - - - 0.846 - - mitofusin 1 [Source:NCBI gene;Acc:424973]
25. DARS ENSGALG00000012355 2887 0.846 - - - - - - - 0.846 - - aspartyl-tRNA synthetase [Source:NCBI gene;Acc:424296]
26. LONP1 ENSGALG00000040492 7133 0.846 - - - - - - - 0.846 - - lon peptidase 1, mitochondrial [Source:HGNC Symbol;Acc:HGNC:9479]
27. WDR47 ENSGALG00000002129 2624 0.846 - - - - - - - 0.846 - - WD repeat domain 47 [Source:HGNC Symbol;Acc:HGNC:29141]
28. DIP2C ENSGALG00000006652 1858 0.846 - - - - - - - 0.846 - - disco interacting protein 2 homolog C [Source:HGNC Symbol;Acc:HGNC:29150]
29. TRNT1 ENSGALG00000017368 11932 0.846 - - - - - - - 0.846 - - tRNA nucleotidyl transferase 1 [Source:HGNC Symbol;Acc:HGNC:17341]
30. NUDCD1 ENSGALG00000040879 2965 0.845 - - - - - - - 0.845 - - NudC domain containing 1 [Source:HGNC Symbol;Acc:HGNC:24306]
31. RGMA ENSGALG00000039173 12874 0.845 - - - - - - - 0.845 - - repulsive guidance molecule family member a [Source:NCBI gene;Acc:395214]
32. TOLLIP ENSGALG00000006697 917 0.845 - - - - - - - 0.845 - - toll interacting protein [Source:NCBI gene;Acc:423099]
33. DACH1 ENSGALG00000037015 5648 0.845 - - - - - - - 0.845 - - dachshund family transcription factor 1 [Source:NCBI gene;Acc:373935]
34. TTC39A ENSGALG00000010540 1025 0.845 - - - - - - - 0.845 - - tetratricopeptide repeat domain 39A [Source:HGNC Symbol;Acc:HGNC:18657]
35. ACL ACL 1813 0.845 - - - - - - - 0.845 - -
36. OLFM1 ENSGALG00000002515 1841 0.845 - - - - - - - 0.845 - - olfactomedin 1 [Source:NCBI gene;Acc:395535]
37. DERL3 ENSGALG00000005994 1499 0.845 - - - - - - - 0.845 - - derlin 3 [Source:NCBI gene;Acc:416934]
38. FAM114A1 ENSGALG00000013583 736 0.845 - - - - - - - 0.845 - - family with sequence similarity 114 member A1 [Source:NCBI gene;Acc:426196]
39. C10orf76 C10orf76 2424 0.845 - - - - - - - 0.845 - -
40. HCFC2 ENSGALG00000029616 4525 0.845 - - - - - - - 0.845 - - host cell factor C2 [Source:HGNC Symbol;Acc:HGNC:24972]
41. PYURF ENSGALG00000039869 5657 0.845 - - - - - - - 0.845 - - PIGY upstream reading frame [Source:HGNC Symbol;Acc:HGNC:44317]
42. SLC43A3 ENSGALG00000020479 1332 0.845 - - - - - - - 0.845 - - solute carrier family 43 member 3 [Source:HGNC Symbol;Acc:HGNC:17466]
43. NDUFAF2 ENSGALG00000027564 7302 0.844 - - - - - - - 0.844 - - NADH:ubiquinone oxidoreductase complex assembly factor 2 [Source:NCBI gene;Acc:769549]
44. ZC3H6 ENSGALG00000008269 10353 0.844 - - - - - - - 0.844 - - zinc finger CCCH-type containing 6 [Source:NCBI gene;Acc:421230]
45. NABP1 ENSGALG00000025884 4195 0.844 - - - - - - - 0.844 - - nucleic acid binding protein 1 [Source:HGNC Symbol;Acc:HGNC:26232]
46. USP3 ENSGALG00000003427 1236 0.844 - - - - - - - 0.844 - - ubiquitin specific peptidase 3 [Source:HGNC Symbol;Acc:HGNC:12626]
47. RP2 ENSGALG00000016728 3291 0.843 - - - - - - - 0.843 - - RP2, ARL3 GTPase activating protein [Source:NCBI gene;Acc:418675]
48. DTD2 ENSGALG00000009978 4322 0.843 - - - - - - - 0.843 - - D-tyrosyl-tRNA deacylase 2 (putative) [Source:HGNC Symbol;Acc:HGNC:20277]
49. SYNE2 ENSGALG00000011811 5542 0.842 - - - - - - - 0.842 - - spectrin repeat containing nuclear envelope protein 2 [Source:HGNC Symbol;Acc:HGNC:17084]
50. DYRK2 ENSGALG00000009901 3141 0.842 - - - - - - - 0.842 - - dual specificity tyrosine phosphorylation regulated kinase 2 [Source:NCBI gene;Acc:427864]
51. SAMHD1 ENSGALG00000001231 5218 0.841 - - - - - - - 0.841 - - SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1 [Source:NCBI gene;Acc:419125]
52. HAPLN1 ENSGALG00000015627 14942 0.841 - - - - - - - 0.841 - - hyaluronan and proteoglycan link protein 1 [Source:NCBI gene;Acc:396475]
53. TP53INP1 ENSGALG00000041353 6890 0.841 - - - - - - - 0.841 - - tumor protein p53 inducible nuclear protein 1 [Source:NCBI gene;Acc:420232]
54. PITX3 ENSGALG00000005613 1518 0.841 - - - - - - - 0.841 - - paired like homeodomain 3
55. DCAF7 ENSGALG00000000510 8681 0.84 - - - - - - - 0.840 - - DDB1 and CUL4 associated factor 7 [Source:NCBI gene;Acc:771554]
56. USP9X ENSGALG00000016236 9419 0.839 - - - - - - - 0.839 - - ubiquitin specific peptidase 9, X-linked, transcript variant X3
57. PPP3CB ENSGALG00000005243 8794 0.838 - - - - - - - 0.838 - - Gallus gallus protein phosphatase 3 catalytic subunit beta (PPP3CB), mRNA. [Source:RefSeq mRNA;Acc:NM_001030340]
58. PDZD11 ENSGALG00000004198 11484 0.837 - - - - - - - 0.837 - - PDZ domain containing 11 [Source:NCBI gene;Acc:422153]
59. ZNF639 ENSGALG00000005944 6387 0.836 - - - - - - - 0.836 - - zinc finger protein 639 [Source:NCBI gene;Acc:425280]
60. ABL ABL 9532 0.833 - - - - - - - 0.833 - -
61. DHFR ENSGALG00000026757 18478 0.832 - - - - - - - 0.832 - - dihydrofolate reductase [Source:NCBI gene;Acc:427317]
62. ST5 6869 0.831 - - - - - - - 0.831 - - suppression of tumorigenicity 5, transcript variant X1
63. MICU3 ENSGALG00000013661 1466 0.831 - - - - - - - 0.831 - - mitochondrial calcium uptake family member 3 [Source:HGNC Symbol;Acc:HGNC:27820]
64. COMMD7 ENSGALG00000006630 11491 0.827 - - - - - - - 0.827 - - COMM domain containing 7 [Source:NCBI gene;Acc:419286]
65. GALNT1 ENSGALG00000013135 13583 0.824 - - - - - - - 0.824 - - polypeptide N-acetylgalactosaminyltransferase 1 [Source:NCBI gene;Acc:420955]
66. RGL1 ENSGALG00000004728 3004 0.821 - - - - - - - 0.821 - - ral guanine nucleotide dissociation stimulator like 1 [Source:NCBI gene;Acc:424446]
67. LOC419404 ENSGALG00000021676 12078 0.821 - - - - - - 0.821 - - - uncharacterized LOC419404
68. MAD2L1BP ENSGALG00000027871 7835 0.819 - - - - - - - 0.819 - - MAD2L1 binding protein [Source:HGNC Symbol;Acc:HGNC:21059]
69. GTLF3B GTLF3B 5079 0.819 - - - - - - - 0.819 - -
70. TMEM120B ENSGALG00000004254 2819 0.816 - - - - - - - 0.816 - - transmembrane protein 120B [Source:NCBI gene;Acc:416847]
71. TFIP11 ENSGALG00000005623 7784 0.813 - - - - - - - 0.813 - - tuftelin interacting protein 11 [Source:NCBI gene;Acc:416909]
72. CIAPIN1 ENSGALG00000029268 23036 0.808 - - - - - - - 0.808 - - cytokine induced apoptosis inhibitor 1 [Source:NCBI gene;Acc:415637]
73. ZCCHC8 ENSGALG00000004486 3201 0.805 - - - - - - - 0.805 - - zinc finger CCHC-type containing 8 [Source:NCBI gene;Acc:416862]
74. PTCD3 ENSGALG00000015773 3059 0.804 - - - - - - - 0.804 - - pentatricopeptide repeat domain 3 [Source:HGNC Symbol;Acc:HGNC:24717]
75. PPP2R5C ENSGALG00000029996 5759 0.802 - - - - - - - 0.802 - - protein phosphatase 2 regulatory subunit B'gamma [Source:NCBI gene;Acc:423460]
76. APAF1 ENSGALG00000011531 3102 0.8 - - - - - - - 0.800 - - apoptotic peptidase activating factor 1 [Source:HGNC Symbol;Acc:HGNC:576]
77. GPS1 ENSGALG00000002827 8433 0.798 - - - - - - - 0.798 - - G protein pathway suppressor 1 [Source:NCBI gene;Acc:417382]
78. EGLN1 ENSGALG00000041422 11032 0.797 - - - - - - - 0.797 - - egl-9 family hypoxia inducible factor 1 [Source:HGNC Symbol;Acc:HGNC:1232]
79. ARPC3 ENSGALG00000003820 29128 0.792 - - - - 0.792 - - - - - actin related protein 2/3 complex subunit 3 [Source:NCBI gene;Acc:416837]
80. DNAJC19 ENSGALG00000008852 6093 0.789 - - - - - - - 0.789 - - DnaJ heat shock protein family (Hsp40) member C19 [Source:HGNC Symbol;Acc:HGNC:30528]
81. GPATCH1 ENSGALG00000004839 6455 0.788 - - - - - - - 0.788 - - G-patch domain containing 1 [Source:HGNC Symbol;Acc:HGNC:24658]
82. RPF1 ENSGALG00000008796 9809 0.786 - - - - - - - 0.786 - - ribosome production factor 1 homolog
83. UPF2 ENSGALG00000033772 9548 0.786 - - - - - - - 0.786 - - UPF2, regulator of nonsense mediated mRNA decay [Source:HGNC Symbol;Acc:HGNC:17854]
84. SUB1 ENSGALG00000003248 56412 0.785 - - - - 0.785 - - - - - SUB1 homolog, transcriptional regulator [Source:NCBI gene;Acc:427425]
85. COG7 ENSGALG00000006156 4072 0.78 - - - - - - - 0.780 - - component of oligomeric golgi complex 7 [Source:NCBI gene;Acc:416578]
86. PTPLB PTPLB 13107 0.779 - - - - - - - 0.779 - -
87. POLR2E ENSGALG00000002591 26405 0.779 - - - - - - - 0.779 - - RNA polymerase II subunit E [Source:HGNC Symbol;Acc:HGNC:9192]
88. SLC35E2B 7675 0.779 - - 0.779 - - - - - - - solute carrier family 35 member E2B
89. COX7B ENSGALG00000007863 59194 0.777 - - - - 0.777 - - - - - cytochrome c oxidase subunit 7B [Source:NCBI gene;Acc:771947]
90. MRPL35 ENSGALG00000022950 26070 0.77 - - - - - - - 0.770 - - mitochondrial ribosomal protein L35 [Source:HGNC Symbol;Acc:HGNC:14489]
91. NUP133 ENSGALG00000011091 3804 0.767 - - - - - - - - 0.767 - nucleoporin 133 [Source:HGNC Symbol;Acc:HGNC:18016]
92. MYL12A ENSGALG00000014854 63033 0.766 - - - - 0.766 - - - - - myosin, light chain 12A, regulatory, non-sarcomeric [Source:NCBI gene;Acc:396284]
93. FGF9 ENSGALG00000025748 469 0.766 - - - - - - - - 0.766 - fibroblast growth factor 9 [Source:NCBI gene;Acc:378917]
94. COL1A2 ENSGALG00000009641 46236 0.766 - - - - - - 0.766 - - - collagen type I alpha 2 chain [Source:NCBI gene;Acc:396243]
95. NDUFS7 ENSGALG00000009703 19674 0.765 - - - - - - - 0.765 - - NADH:ubiquinone oxidoreductase core subunit S7 [Source:HGNC Symbol;Acc:HGNC:7714]
96. HMGB1 ENSGALG00000042875 83509 0.765 - - - - - - 0.765 - - - high mobility group box 1 [Source:NCBI gene;Acc:395724]
97. MT-ND4L MT-ND4L 12537 0.76 - - - - - - - 0.760 - -
98. NDUFB5 ENSGALG00000009076 32963 0.76 - - - - 0.760 - - - - - NADH:ubiquinone oxidoreductase subunit B5 [Source:NCBI gene;Acc:424978]
99. PIGB ENSGALG00000037734 2193 0.756 - - - - - - - - 0.756 - phosphatidylinositol glycan anchor biosynthesis class B [Source:HGNC Symbol;Acc:HGNC:8959]
100. PPA2 ENSGALG00000010582 22301 0.754 - - - - 0.754 - - - - - pyrophosphatase (inorganic) 2 [Source:HGNC Symbol;Acc:HGNC:28883]

There are 76 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA