Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for SF3A1

Gene Name Gene ID Reads Annotation
SF3A1 ENSGALG00000007937 11716 splicing factor 3a subunit 1 [Source:NCBI gene;Acc:427717]











Genes with expression patterns similar to SF3A1

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. SF3A1 ENSGALG00000007937 11716 8 1.000 - 1.000 1.000 1.000 - 1.000 1.000 1.000 1.000 splicing factor 3a subunit 1 [Source:NCBI gene;Acc:427717]
2. PPP1R8 ENSGALG00000000729 11797 1.806 - - - - - - 0.992 0.814 - - protein phosphatase 1 regulatory subunit 8 [Source:NCBI gene;Acc:419564]
3. NSF ENSGALG00000001055 7399 1.806 - - - - - - 0.994 0.812 - - N-ethylmaleimide sensitive factor, vesicle fusing ATPase [Source:NCBI gene;Acc:419972]
4. GAS41 GAS41 9941 1.743 - - - - - - 0.998 0.745 - -
5. POGZ ENSGALG00000036365 4056 1.704 - - 0.706 - - - 0.998 - - - pogo transposable element with ZNF domain, transcript variant X2
6. MCM3 ENSGALG00000016676 16934 1.614 - - 0.758 - - - - 0.856 - - minichromosome maintenance complex component 3 [Source:NCBI gene;Acc:422043]
7. TXN2 ENSGALG00000012532 12518 1.579 - - 0.823 - - - - 0.756 - - thioredoxin 2 [Source:NCBI gene;Acc:426978]
8. NR2C1 ENSGALG00000011327 5109 1.558 - - 0.739 - - - - 0.819 - - nuclear receptor subfamily 2, group C, member 1 [Source:NCBI gene;Acc:373913]
9. CHORDC1 ENSGALG00000035461 2439 1.526 - - 0.808 - - - - - - 0.718 cysteine and histidine rich domain containing 1 [Source:NCBI gene;Acc:419009]
10. AGFG1 ENSGALG00000003052 4766 1.502 - - 0.711 - - - - 0.791 - - ArfGAP with FG repeats 1 [Source:HGNC Symbol;Acc:HGNC:5175]
11. EIF2B2 ENSGALG00000010301 10772 1.497 - - 0.722 - - - - 0.775 - - eukaryotic translation initiation factor 2B subunit beta [Source:NCBI gene;Acc:423359]
12. MYCL ENSGALG00000024047 10367 1.463 - - - - - - - 0.737 - 0.726 MYCL proto-oncogene, bHLH transcription factor [Source:HGNC Symbol;Acc:HGNC:7555]
13. CASC4 ENSGALG00000008208 8338 0.999 - - - - - - 0.999 - - - cancer susceptibility 4 [Source:NCBI gene;Acc:415575]
14. SAMM50 ENSGALG00000014194 20437 0.999 - - - - - - 0.999 - - - SAMM50 sorting and assembly machinery component [Source:NCBI gene;Acc:418234]
15. EIF5B ENSGALG00000016764 30681 0.999 - - - - - - 0.999 - - - eukaryotic translation initiation factor 5B [Source:NCBI gene;Acc:395514]
16. WDR33 ENSGALG00000002043 6340 0.998 - - - - - - 0.998 - - - WD repeat domain 33 [Source:HGNC Symbol;Acc:HGNC:25651]
17. CCDC47 ENSGALG00000000564 6584 0.998 - - - - - - 0.998 - - - coiled-coil domain containing 47 [Source:HGNC Symbol;Acc:HGNC:24856]
18. HOXB3 ENSGALG00000043219 5198 0.998 - - - - - - 0.998 - - - homeobox B3 [Source:NCBI gene;Acc:395502]
19. VPS41 ENSGALG00000031635 4391 0.998 - - - - - - 0.998 - - - VPS41, HOPS complex subunit [Source:NCBI gene;Acc:420762]
20. FAM206A ENSGALG00000019524 7170 0.998 - - - - - - 0.998 - - - family with sequence similarity 206 member A [Source:NCBI gene;Acc:420983]
21. TRIM37 ENSGALG00000005084 4036 0.998 - - - - - - 0.998 - - - tripartite motif containing 37 [Source:NCBI gene;Acc:417628]
22. C-MET C-MET 1650 0.998 - - - - - - 0.998 - - -
23. USP34 ENSGALG00000004455 6667 0.998 - - - - - - 0.998 - - - ubiquitin specific peptidase 34 [Source:NCBI gene;Acc:421193]
24. ZCCHC17 ENSGALG00000000618 5163 0.998 - - - - - - 0.998 - - - zinc finger CCHC-type containing 17 [Source:NCBI gene;Acc:404295]
25. TMEM9B ENSGALG00000005908 14074 0.998 - - - - - - 0.998 - - - TMEM9 domain family member B [Source:HGNC Symbol;Acc:HGNC:1168]
26. RARRES2 ENSGALG00000042642 3043 0.998 - - - - - - 0.998 - - - retinoic acid receptor responder (tazarotene induced) 2 [Source:NCBI gene;Acc:420366]
27. STT3B ENSGALG00000011465 11939 0.998 - - - - - - 0.998 - - - STT3B, catalytic subunit of the oligosaccharyltransferase complex [Source:NCBI gene;Acc:428444]
28. FAAH ENSGALG00000010433 3309 0.998 - - - - - - 0.998 - - - fatty acid amide hydrolase [Source:HGNC Symbol;Acc:HGNC:3553]
29. SH2D3C ENSGALG00000005036 5101 0.998 - - - - - - 0.998 - - - SH2 domain containing 3C [Source:HGNC Symbol;Acc:HGNC:16884]
30. PPP1CB ENSGALG00000010026 6909 0.997 - - - - - - 0.997 - - - protein phosphatase 1 catalytic subunit beta [Source:NCBI gene;Acc:396019]
31. SLC9A3R2 ENSGALG00000005608 4220 0.997 - - - - - - 0.997 - - - SLC9A3 regulator 2 [Source:HGNC Symbol;Acc:HGNC:11076]
32. SSR1 ENSGALG00000012798 62626 0.997 - - - - - - 0.997 - - - signal sequence receptor subunit 1 [Source:NCBI gene;Acc:420871]
33. TLE4 TLE4 7278 0.997 - - - - - - 0.997 - - -
34. PCNA ENSGALG00000029292 19163 0.997 - - - - - - 0.997 - - - proliferating cell nuclear antigen [Source:NCBI gene;Acc:373984]
35. GTF2I ENSGALG00000021665 6812 0.997 - - - - - - 0.997 - - - general transcription factor IIi [Source:HGNC Symbol;Acc:HGNC:4659]
36. BTG1 ENSGALG00000011276 17496 0.994 - - - - - - 0.994 - - - BTG anti-proliferation factor 1 [Source:NCBI gene;Acc:396295]
37. FKBP9 ENSGALG00000037669 12079 0.994 - - - - - - 0.994 - - - FK506 binding protein 9 [Source:NCBI gene;Acc:395652]
38. MTF2 ENSGALG00000043087 15225 0.994 - - - - - - 0.994 - - - metal response element binding transcription factor 2 [Source:NCBI gene;Acc:395174]
39. BID ENSGALG00000013039 12427 0.992 - - - - - - 0.992 - - - BH3 interacting domain death agonist [Source:NCBI gene;Acc:395236]
40. NAA15 ENSGALG00000009782 18563 0.991 - - - - - - 0.991 - - - N(alpha)-acetyltransferase 15, NatA auxiliary subunit [Source:HGNC Symbol;Acc:HGNC:30782]
41. GFPT1 ENSGALG00000036391 14025 0.989 - - - - - - 0.989 - - - glutamine--fructose-6-phosphate transaminase 1 [Source:NCBI gene;Acc:419514]
42. OLFML3 ENSGALG00000001956 28633 0.985 - - - - - - 0.985 - - - olfactomedin like 3 [Source:NCBI gene;Acc:419882]
43. FANCC ENSGALG00000012618 7002 0.984 - - - - - - 0.984 - - - FA complementation group C [Source:NCBI gene;Acc:427468]
44. STK3 ENSGALG00000032850 6339 0.982 - - - - - - 0.982 - - - serine/threonine kinase 3 [Source:NCBI gene;Acc:425375]
45. LPHN2 LPHN2 16507 0.98 - - - - - - 0.980 - - -
46. LARS ENSGALG00000007494 13966 0.979 - - - - - - 0.979 - - - leucyl-tRNA synthetase [Source:HGNC Symbol;Acc:HGNC:6512]
47. NOL9 ENSGALG00000028958 23978 0.975 - - - - - - 0.975 - - - nucleolar protein 9 [Source:HGNC Symbol;Acc:HGNC:26265]
48. SRSF7 ENSGALG00000033120 43444 0.964 - - - - - - 0.964 - - - serine and arginine rich splicing factor 7 [Source:NCBI gene;Acc:426265]
49. PKM ENSGALG00000001992 93960 0.94 - - - - - - 0.940 - - - pyruvate kinase M1/2 [Source:NCBI gene;Acc:396456]
50. SYNCRIP ENSGALG00000015830 30555 0.927 - - - - - - 0.927 - - - synaptotagmin binding cytoplasmic RNA interacting protein [Source:NCBI gene;Acc:421831]
51. ACTG1 ENSGALG00000001381 63905 0.921 - - - - - - 0.921 - - - Actin, gamma 1 [Source:NCBI gene;Acc:415296]
52. GNB2L1 ENSGALG00000000122 194871 0.897 - - - - - - 0.897 - - - receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
53. REXO2 ENSGALG00000035980 16319 0.887 - - 0.887 - - - - - - - RNA exonuclease 2 [Source:NCBI gene;Acc:419761]
54. BZW2 ENSGALG00000010809 29213 0.88 - - 0.880 - - - - - - - basic leucine zipper and W2 domains 2 [Source:NCBI gene;Acc:420594]
55. SFSWAP ENSGALG00000002487 9977 0.879 - - - - - - 0.879 - - - splicing factor SWAP [Source:HGNC Symbol;Acc:HGNC:10790]
56. NDUFS4 ENSGALG00000028026 25876 0.873 - - - - - - 0.873 - - - NADH:ubiquinone oxidoreductase subunit S4 [Source:HGNC Symbol;Acc:HGNC:7711]
57. N4BP2L2 857 0.87 - - 0.870 - - - - - - - NEDD4 binding protein 2 like 2, transcript variant X7
58. PSMD14 ENSGALG00000011128 13335 0.869 - - 0.869 - - - - - - - proteasome 26S subunit, non-ATPase 14 [Source:NCBI gene;Acc:424189]
59. C17orf75 ENSGALG00000003434 4262 0.867 - - 0.867 - - - - - - - chromosome 17 open reading frame 75 [Source:HGNC Symbol;Acc:HGNC:30173]
60. NCAPD2 ENSGALG00000039448 8658 0.867 - - 0.867 - - - - - - - non-SMC condensin I complex subunit D2 [Source:NCBI gene;Acc:418275]
61. SPG11 ENSGALG00000008180 1890 0.866 - - 0.866 - - - - - - - SPG11, spatacsin vesicle trafficking associated [Source:HGNC Symbol;Acc:HGNC:11226]
62. TMEM175 ENSGALG00000015368 3342 0.864 - - 0.864 - - - - - - - transmembrane protein 175 [Source:NCBI gene;Acc:427293]
63. KCTD10 ENSGALG00000005138 1191 0.862 - - 0.862 - - - - - - - potassium channel tetramerization domain containing 10 [Source:HGNC Symbol;Acc:HGNC:23236]
64. TRA2B ENSGALG00000006531 40566 0.86 - - 0.860 - - - - - - - transformer 2 beta homolog (Drosophila) [Source:NCBI gene;Acc:395403]
65. ATP6V0A2 ENSGALG00000003194 4824 0.856 - - 0.856 - - - - - - - ATPase H+ transporting V0 subunit a2 [Source:NCBI gene;Acc:395473]
66. DDX42 ENSGALG00000000581 8780 0.855 - - 0.855 - - - - - - - DEAD-box helicase 42 [Source:NCBI gene;Acc:419959]
67. EEF1D 153795 0.853 - - - - - - 0.853 - - - eukaryotic translation elongation factor 1 delta, transcript variant X13
68. ADPRHL2 ENSGALG00000002304 2674 0.852 - - 0.852 - - - - - - - ADP-ribosylhydrolase like 2 [Source:NCBI gene;Acc:419626]
69. C6orf211 C6orf211 2644 0.852 - - 0.852 - - - - - - -
70. CALSYNTENIN-1 CALSYNTENIN-1 11195 0.851 - - 0.851 - - - - - - -
71. GOSR1 ENSGALG00000004326 1556 0.847 - - 0.847 - - - - - - - golgi SNAP receptor complex member 1 [Source:NCBI gene;Acc:417591]
72. AP2M1 ENSGALG00000008432 16249 0.845 - - 0.845 - - - - - - - adaptor related protein complex 2 mu 1 subunit [Source:NCBI gene;Acc:770246]
73. SESN1 ENSGALG00000015286 2387 0.843 - - 0.843 - - - - - - - sestrin 1 [Source:HGNC Symbol;Acc:HGNC:21595]
74. MYST2 MYST2 8078 0.841 - - - - - - - 0.841 - -
75. PLEKHB2 ENSGALG00000002169 3832 0.839 - - 0.839 - - - - - - - pleckstrin homology domain containing B2 [Source:NCBI gene;Acc:424758]
76. C2H6orf52 ENSGALG00000012721 3631 0.836 - - 0.836 - - - - - - - chromosome 2 C6orf52 homolog [Source:NCBI gene;Acc:420849]
77. PSMD7 ENSGALG00000000707 26350 0.836 - - - - - - - 0.836 - - proteasome 26S subunit, non-ATPase 7 [Source:HGNC Symbol;Acc:HGNC:9565]
78. ERCC3 ENSGALG00000011515 3133 0.835 - - 0.835 - - - - - - - ERCC excision repair 3, TFIIH core complex helicase subunit [Source:NCBI gene;Acc:424226]
79. SFXN4 ENSGALG00000009350 3899 0.834 - - 0.834 - - - - - - - sideroflexin 4 [Source:HGNC Symbol;Acc:HGNC:16088]
80. HOXA7 ENSGALG00000026989 6746 0.832 - - 0.832 - - - - - - - homeobox A7 [Source:NCBI gene;Acc:395290]
81. SNRB SNRB 4477 0.832 - - 0.832 - - - - - - -
82. SCAMP5 ENSGALG00000014116 8877 0.828 - - - - - - - 0.828 - - secretory carrier membrane protein 5 [Source:HGNC Symbol;Acc:HGNC:30386]
83. GTF2E1 ENSGALG00000042320 7712 0.828 - - 0.828 - - - - - - - general transcription factor IIE subunit 1 [Source:HGNC Symbol;Acc:HGNC:4650]
84. POMP ENSGALG00000017090 5504 0.828 - - 0.828 - - - - - - - proteasome maturation protein [Source:HGNC Symbol;Acc:HGNC:20330]
85. IGF2BP1 ENSGALG00000041204 6420 0.827 - - 0.827 - - - - - - - insulin like growth factor 2 mRNA binding protein 1 [Source:NCBI gene;Acc:395953]
86. MED4 ENSGALG00000016995 3309 0.827 - - - - - - - 0.827 - - mediator complex subunit 4 [Source:HGNC Symbol;Acc:HGNC:17903]
87. SEPHS1 ENSGALG00000014575 10701 0.827 - - 0.827 - - - - - - - selenophosphate synthetase 1 [Source:NCBI gene;Acc:426612]
88. GABARAPL2 ENSGALG00000003208 9195 0.826 - - 0.826 - - - - - - - GABA type A receptor associated protein like 2 [Source:HGNC Symbol;Acc:HGNC:13291]
89. TXNL1 ENSGALG00000033862 13899 0.825 - - - - - - - 0.825 - - thioredoxin like 1 [Source:HGNC Symbol;Acc:HGNC:12436]
90. WDR92 ENSGALG00000008760 3934 0.825 - - 0.825 - - - - - - - WD repeat domain 92 [Source:NCBI gene;Acc:769534]
91. OVCA2 ENSGALG00000045371 2862 0.824 - - 0.824 - - - - - - - OVCA2, serine hydrolase domain containing [Source:HGNC Symbol;Acc:HGNC:24203]
92. CENPO ENSGALG00000016609 1699 0.824 - - 0.824 - - - - - - - centromere protein O [Source:NCBI gene;Acc:422014]
93. AKTIP ENSGALG00000033378 1991 0.822 - - 0.822 - - - - - - - AKT interacting protein [Source:NCBI gene;Acc:415720]
94. NACAD 679 0.822 - - 0.822 - - - - - - - NAC alpha domain containing, transcript variant X1
95. EMP1 ENSGALG00000011803 351 0.821 - - 0.821 - - - - - - - epithelial membrane protein 1 [Source:NCBI gene;Acc:417964]
96. MED17 ENSGALG00000017218 5821 0.821 - - - - - - - 0.821 - - mediator complex subunit 17 [Source:NCBI gene;Acc:419000]
97. LPCAT3 ENSGALG00000014570 7919 0.82 - - 0.820 - - - - - - - lysophosphatidylcholine acyltransferase 3 [Source:HGNC Symbol;Acc:HGNC:30244]
98. AMFR ENSGALG00000003107 6560 0.82 - - 0.820 - - - - - - - autocrine motility factor receptor [Source:HGNC Symbol;Acc:HGNC:463]
99. CPSF3 ENSGALG00000016424 342 0.819 - - 0.819 - - - - - - - cleavage and polyadenylation specific factor 3 [Source:HGNC Symbol;Acc:HGNC:2326]
100. TMLHE ENSGALG00000007443 3619 0.819 - - - - - - - 0.819 - - trimethyllysine hydroxylase, epsilon [Source:NCBI gene;Acc:422296]

There are 420 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA