Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for SDCBP

Gene Name Gene ID Reads Annotation
SDCBP ENSGALG00000015436 1228 syndecan binding protein [Source:NCBI gene;Acc:421136]











Genes with expression patterns similar to SDCBP

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. SDCBP ENSGALG00000015436 1228 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 syndecan binding protein [Source:NCBI gene;Acc:421136]
2. LZIC ENSGALG00000002616 9052 1.911 - - 0.915 - 0.996 - - - - - leucine zipper and CTNNBIP1 domain containing [Source:NCBI gene;Acc:419445]
3. SORCS1 ENSGALG00000008465 468 1.786 - - 0.950 - - - - - - 0.836 sortilin related VPS10 domain containing receptor 1 [Source:HGNC Symbol;Acc:HGNC:16697]
4. RHOT1 ENSGALG00000003397 5149 1.78 - - 0.802 - 0.978 - - - - - ras homolog family member T1 [Source:NCBI gene;Acc:417410]
5. RNF4 ENSGALG00000015668 15780 1.72 - - 0.814 - 0.906 - - - - - ring finger protein 4 [Source:NCBI gene;Acc:422886]
6. RPL22 ENSGALG00000000719 74238 1.719 - - 0.785 - 0.934 - - - - - ribosomal protein L22 [Source:NCBI gene;Acc:373937]
7. FAM178A FAM178A 2738 1.698 - - 0.925 - - - - - - 0.773
8. USP15 ENSGALG00000030024 2761 1.657 - - 0.872 - - - - - - 0.785 ubiquitin specific peptidase 15 [Source:NCBI gene;Acc:395644]
9. SYNCRIP ENSGALG00000015830 30555 1.641 - - 0.906 - 0.735 - - - - - synaptotagmin binding cytoplasmic RNA interacting protein [Source:NCBI gene;Acc:421831]
10. MYO18A ENSGALG00000003741 1023 1.633 - - 0.929 - - - - - - 0.704 myosin XVIIIA [Source:HGNC Symbol;Acc:HGNC:31104]
11. NAA16 ENSGALG00000032808 3366 1.626 - - 0.827 - - - - - - 0.799 N(alpha)-acetyltransferase 16, NatA auxiliary subunit [Source:HGNC Symbol;Acc:HGNC:26164]
12. HP1BP3 ENSGALG00000010079 33723 1.593 - - 0.786 - 0.807 - - - - - heterochromatin protein 1 binding protein 3 [Source:NCBI gene;Acc:425543]
13. RIT1 ENSGALG00000014647 7174 1.579 - - 0.756 - - - - - - 0.823 Ras like without CAAX 1 [Source:NCBI gene;Acc:425068]
14. SAAL1 ENSGALG00000026111 8340 1.553 - - 0.789 - 0.764 - - - - - serum amyloid A like 1
15. TOP2B ENSGALG00000011300 25048 1.508 - - 0.735 - 0.773 - - - - - DNA topoisomerase 2-beta [Source:NCBI gene;Acc:395966]
16. CLTA ENSGALG00000015326 26867 1.488 - - 0.723 - 0.765 - - - - - clathrin light chain A [Source:NCBI gene;Acc:427284]
17. RAMP3 ENSGALG00000037246 1187 0.999 - - - - 0.999 - - - - - receptor activity modifying protein 3 [Source:NCBI gene;Acc:420786]
18. SMG7 ENSGALG00000004667 707 0.999 - - - - 0.999 - - - - - SMG7, nonsense mediated mRNA decay factor [Source:HGNC Symbol;Acc:HGNC:16792]
19. PREP2 PREP2 238 0.999 - - - - 0.999 - - - - -
20. ANKRD9 ENSGALG00000011376 525 0.999 - - - - 0.999 - - - - - ankyrin repeat domain 9 [Source:HGNC Symbol;Acc:HGNC:20096]
21. BRF1 ENSGALG00000011705 3406 0.998 - - - - 0.998 - - - - - BRF1, RNA polymerase III transcription initiation factor subunit [Source:HGNC Symbol;Acc:HGNC:11551]
22. YARS ENSGALG00000003563 11093 0.998 - - - - 0.998 - - - - - tyrosyl-tRNA synthetase [Source:NCBI gene;Acc:419666]
23. PRDM4 ENSGALG00000012619 876 0.998 - - - - 0.998 - - - - - PR/SET domain 4 [Source:HGNC Symbol;Acc:HGNC:9348]
24. MED8 ENSGALG00000009993 3095 0.998 - - - - 0.998 - - - - - mediator complex subunit 8 [Source:NCBI gene;Acc:424565]
25. PTK2B ENSGALG00000016564 406 0.998 - - - - 0.998 - - - - - protein tyrosine kinase 2 beta [Source:HGNC Symbol;Acc:HGNC:9612]
26. RBM6 ENSGALG00000035578 1690 0.997 - - - - 0.997 - - - - - RNA binding motif protein 6 [Source:NCBI gene;Acc:415931]
27. GTF2H1 ENSGALG00000042340 1553 0.997 - - - - 0.997 - - - - - general transcription factor IIH subunit 1 [Source:NCBI gene;Acc:423081]
28. SAP30 ENSGALG00000036252 2032 0.995 - - - - 0.995 - - - - - Sin3A associated protein 30 [Source:HGNC Symbol;Acc:HGNC:10532]
29. SYNE1 ENSGALG00000013505 2324 0.995 - - - - 0.995 - - - - - spectrin repeat containing, nuclear envelope 1, transcript variant X3
30. PITHD1 ENSGALG00000003986 11470 0.995 - - - - 0.995 - - - - - PITH domain containing 1 [Source:HGNC Symbol;Acc:HGNC:25022]
31. ASAP2 ENSGALG00000016419 1393 0.995 - - - - 0.995 - - - - - ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 [Source:HGNC Symbol;Acc:HGNC:2721]
32. NDUFV1 ENSGALG00000042809 6222 0.995 - - - - 0.995 - - - - - NADH:ubiquinone oxidoreductase core subunit V1 [Source:NCBI gene;Acc:430210]
33. TMF1 ENSGALG00000013408 3344 0.994 - - - - 0.994 - - - - - TATA element modulatory factor 1 [Source:HGNC Symbol;Acc:HGNC:11870]
34. SNX14 ENSGALG00000015831 2554 0.994 - - - - 0.994 - - - - - sorting nexin 14 [Source:NCBI gene;Acc:421832]
35. PHTF1 ENSGALG00000001845 3276 0.994 - - - - 0.994 - - - - - putative homeodomain transcription factor 1 [Source:HGNC Symbol;Acc:HGNC:8939]
36. ENSGALG00000006569 ENSGALG00000006569 2169 0.994 - - - - 0.994 - - - - -
37. ETS1 ENSGALG00000001143 7284 0.994 - - - - 0.994 - - - - - v-ets avian erythroblastosis virus E26 oncogene homolog 1 [Source:NCBI gene;Acc:396235]
38. BAHD1 ENSGALG00000033675 1779 0.994 - - - - 0.994 - - - - - bromo adjacent homology domain containing 1 [Source:HGNC Symbol;Acc:HGNC:29153]
39. RBM34 ENSGALG00000029915 5618 0.993 - - - - 0.993 - - - - - RNA binding motif protein 34 [Source:HGNC Symbol;Acc:HGNC:28965]
40. RAD54B ENSGALG00000043597 1699 0.993 - - - - 0.993 - - - - - RAD54 homolog B [Source:NCBI gene;Acc:395449]
41. MRPL16 ENSGALG00000029419 8033 0.993 - - - - 0.993 - - - - - mitochondrial ribosomal protein L16 [Source:HGNC Symbol;Acc:HGNC:14476]
42. IARS2 ENSGALG00000009566 4599 0.992 - - - - 0.992 - - - - - isoleucyl-tRNA synthetase 2, mitochondrial [Source:NCBI gene;Acc:421346]
43. HSF2 ENSGALG00000038420 5259 0.992 - - - - 0.992 - - - - - heat shock transcription factor 2 [Source:NCBI gene;Acc:421724]
44. EDNRA ENSGALG00000010013 2472 0.992 - - - - 0.992 - - - - - endothelin receptor type A [Source:NCBI gene;Acc:373908]
45. KIF11 ENSGALG00000030597 5528 0.992 - - - - 0.992 - - - - - kinesin family member 11 [Source:NCBI gene;Acc:423809]
46. RALGDS ENSGALG00000003412 4478 0.992 - - - - 0.992 - - - - - ral guanine nucleotide dissociation stimulator, transcript variant X10
47. C9orf85 ENSGALG00000026001 4110 0.991 - - - - 0.991 - - - - - chromosome 9 open reading frame 85 [Source:HGNC Symbol;Acc:HGNC:28784]
48. FNDC5 ENSGALG00000003567 3328 0.991 - - - - 0.991 - - - - - Gallus gallus fibronectin type III domain containing 5 (FNDC5), mRNA. [Source:RefSeq mRNA;Acc:NM_001318986]
49. DGKZ ENSGALG00000008380 5389 0.99 - - - - 0.990 - - - - - diacylglycerol kinase zeta [Source:NCBI gene;Acc:423197]
50. COQ5 ENSGALG00000007185 5614 0.989 - - - - 0.989 - - - - - coenzyme Q5, methyltransferase [Source:NCBI gene;Acc:416975]
51. DLL1 ENSGALG00000011182 1613 0.989 - - - - 0.989 - - - - - delta like canonical Notch ligand 1 [Source:NCBI gene;Acc:395820]
52. STARD3NL ENSGALG00000033038 4851 0.989 - - - - 0.989 - - - - - STARD3 N-terminal like [Source:HGNC Symbol;Acc:HGNC:19169]
53. TSPO2 ENSGALG00000003212 5141 0.989 - - - - 0.989 - - - - - translocator protein 2 [Source:HGNC Symbol;Acc:HGNC:21256]
54. WDR92 ENSGALG00000008760 3934 0.989 - - - - 0.989 - - - - - WD repeat domain 92 [Source:NCBI gene;Acc:769534]
55. MEF2BNB MEF2BNB 5578 0.989 - - - - 0.989 - - - - -
56. LOC426385 ENSGALG00000026301 2703 0.988 - - - - 0.988 - - - - - serine/threonine kinase 35-like, transcript variant X2
57. TIMMDC1 ENSGALG00000024480 9337 0.988 - - - - 0.988 - - - - - translocase of inner mitochondrial membrane domain containing 1 [Source:NCBI gene;Acc:418453]
58. CDKN1B ENSGALG00000022980 4606 0.988 - - - - 0.988 - - - - - cyclin dependent kinase inhibitor 1B [Source:NCBI gene;Acc:374106]
59. MED21 ENSGALG00000027435 5766 0.988 - - - - 0.988 - - - - - mediator complex subunit 21 [Source:HGNC Symbol;Acc:HGNC:11473]
60. UTP6 ENSGALG00000003260 4909 0.986 - - - - 0.986 - - - - - UTP6, small subunit processome component [Source:NCBI gene;Acc:417405]
61. ENSGALG00000027854 ENSGALG00000027854 5007 0.986 - - - - 0.986 - - - - -
62. LMAN2 ENSGALG00000033232 11740 0.985 - - - - 0.985 - - - - - lectin, mannose binding 2 [Source:HGNC Symbol;Acc:HGNC:16986]
63. SFXN5 ENSGALG00000016094 2678 0.985 - - - - 0.985 - - - - - sideroflexin 5 [Source:HGNC Symbol;Acc:HGNC:16073]
64. PBRM1 ENSGALG00000037455 6450 0.984 - - - - 0.984 - - - - - polybromo 1 [Source:NCBI gene;Acc:396074]
65. MARC1 ENSGALG00000009453 5675 0.983 - - - - 0.983 - - - - - mitochondrial amidoxime reducing component 1 [Source:NCBI gene;Acc:428563]
66. PSMG3 ENSGALG00000004203 11240 0.982 - - - - 0.982 - - - - - proteasome assembly chaperone 3 [Source:NCBI gene;Acc:416463]
67. CDH3 5050 0.981 - - - - 0.981 - - - - - cadherin 3
68. WNK2 ENSGALG00000038850 4712 0.98 - - - - 0.980 - - - - - WNK lysine deficient protein kinase 2 [Source:HGNC Symbol;Acc:HGNC:14542]
69. MYBL2 ENSGALG00000003503 15875 0.979 - - - - 0.979 - - - - - MYB proto-oncogene like 2 [Source:NCBI gene;Acc:396258]
70. HARS ENSGALG00000035080 11602 0.979 - - - - 0.979 - - - - - histidyl-tRNA synthetase [Source:NCBI gene;Acc:416132]
71. UPF3B ENSGALG00000008618 12350 0.979 - - - - 0.979 - - - - - UPF3B, regulator of nonsense mediated mRNA decay [Source:HGNC Symbol;Acc:HGNC:20439]
72. SH3BGR ENSGALG00000016127 2561 0.978 - - - - 0.978 - - - - - SH3 domain binding glutamate rich protein
73. FUNDC2 ENSGALG00000029585 9334 0.978 - - - - 0.978 - - - - - FUN14 domain containing 2 [Source:HGNC Symbol;Acc:HGNC:24925]
74. CCDC132 CCDC132 2632 0.977 - - - - 0.977 - - - - -
75. LGMN ENSGALG00000010811 7401 0.976 - - - - 0.976 - - - - - legumain [Source:HGNC Symbol;Acc:HGNC:9472]
76. CDCA7 ENSGALG00000040833 7484 0.974 - - - - 0.974 - - - - - cell division cycle associated 7 [Source:HGNC Symbol;Acc:HGNC:14628]
77. DLD ENSGALG00000007931 11011 0.974 - - - - 0.974 - - - - - dihydrolipoamide dehydrogenase [Source:NCBI gene;Acc:417699]
78. ACAT2 ENSGALG00000011659 12825 0.973 - - - - 0.973 - - - - - acetyl-CoA acetyltransferase 2 [Source:NCBI gene;Acc:421587]
79. SLMO2 SLMO2 9207 0.973 - - - - 0.973 - - - - -
80. PSMD3 ENSGALG00000033162 25615 0.972 - - - - 0.972 - - - - - proteasome 26S subunit, non-ATPase 3 [Source:NCBI gene;Acc:426133]
81. LGALS1 ENSGALG00000012420 13993 0.972 - - - - 0.972 - - - - - galectin 1 [Source:NCBI gene;Acc:396491]
82. MYO9A ENSGALG00000033618 4505 0.971 - - - - 0.971 - - - - - myosin IXA, transcript variant X10
83. GATC ENSGALG00000007195 8610 0.971 - - - - 0.971 - - - - - glutamyl-tRNA amidotransferase subunit C, transcript variant X2
84. NEK6 ENSGALG00000001118 20333 0.97 - - - - 0.970 - - - - - NIMA related kinase 6 [Source:NCBI gene;Acc:417101]
85. SPRED1 ENSGALG00000028203 6520 0.97 - - - - 0.970 - - - - - sprouty related EVH1 domain containing 1 [Source:NCBI gene;Acc:423292]
86. DENR ENSGALG00000003795 30805 0.969 - - - - 0.969 - - - - - density regulated re-initiation and release factor [Source:NCBI gene;Acc:771794]
87. SLC30A4 ENSGALG00000005703 5696 0.968 - - - - 0.968 - - - - - solute carrier family 30 member 4 [Source:NCBI gene;Acc:415444]
88. TAF3 ENSGALG00000006731 15569 0.966 - - - - 0.966 - - - - - TATA-box binding protein associated factor 3 [Source:NCBI gene;Acc:419107]
89. SPEN ENSGALG00000036932 9688 0.965 - - - - 0.965 - - - - - spen family transcriptional repressor [Source:HGNC Symbol;Acc:HGNC:17575]
90. NUP88 ENSGALG00000032280 9847 0.965 - - - - 0.965 - - - - - nucleoporin 88 [Source:HGNC Symbol;Acc:HGNC:8067]
91. SRGAP1 ENSGALG00000009825 6753 0.964 - - - - 0.964 - - - - - SLIT-ROBO Rho GTPase activating protein 1 [Source:NCBI gene;Acc:417821]
92. C8H1ORF52 C8H1ORF52 118 0.964 - - 0.964 - - - - - - -
93. TMEM38B ENSGALG00000027472 2465 0.964 - - 0.964 - - - - - - - transmembrane protein 38B [Source:HGNC Symbol;Acc:HGNC:25535]
94. PRCC ENSGALG00000040696 9346 0.962 - - - - 0.962 - - - - - proline rich mitotic checkpoint control factor [Source:HGNC Symbol;Acc:HGNC:9343]
95. TRIM45 ENSGALG00000014818 1258 0.962 - - 0.962 - - - - - - - tripartite motif containing 45 [Source:HGNC Symbol;Acc:HGNC:19018]
96. ZYX ENSGALG00000014688 8686 0.961 - - - - 0.961 - - - - - zyxin [Source:NCBI gene;Acc:418300]
97. ZC3H6 ENSGALG00000008269 10353 0.961 - - - - 0.961 - - - - - zinc finger CCCH-type containing 6 [Source:NCBI gene;Acc:421230]
98. PRKCI ENSGALG00000009364 11574 0.959 - - - - 0.959 - - - - - protein kinase C iota [Source:NCBI gene;Acc:424991]
99. HDAC8 ENSGALG00000004825 12066 0.959 - - - - 0.959 - - - - - histone deacetylase 8, transcript variant X2
100. DAPK3 ENSGALG00000037733 6215 0.958 - - 0.958 - - - - - - - death-associated protein kinase 3, transcript variant X2

There are 693 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA