Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for SDC3

Gene Name Gene ID Reads Annotation
SDC3 ENSGALG00000035184 14096 syndecan 3 [Source:NCBI gene;Acc:396343]











Genes with expression patterns similar to SDC3

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. SDC3 ENSGALG00000035184 14096 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 syndecan 3 [Source:NCBI gene;Acc:396343]
2. KIF26A ENSGALG00000011581 11285 1.612 - - - - - - - 0.722 - 0.890 kinesin family member 26A [Source:HGNC Symbol;Acc:HGNC:20226]
3. ANO1 ENSGALG00000041808 5149 1.562 - - - - - - - 0.765 - 0.797 anoctamin 1 [Source:HGNC Symbol;Acc:HGNC:21625]
4. ANKRD40 ENSGALG00000007389 1693 1.418 - - - - - - - 0.713 - 0.705 ankyrin repeat domain 40 [Source:NCBI gene;Acc:428678]
5. TBRG4 ENSGALG00000038102 9269 0.998 - - - - - - 0.998 - - - transforming growth factor beta regulator 4 [Source:HGNC Symbol;Acc:HGNC:17443]
6. PCMT1 ENSGALG00000012388 7778 0.996 - - - - - - 0.996 - - - protein-L-isoaspartate (D-aspartate) O-methyltransferase [Source:NCBI gene;Acc:428607]
7. PUF60 ENSGALG00000039901 26902 0.993 - - - - - - 0.993 - - - poly(U) binding splicing factor 60 [Source:NCBI gene;Acc:426402]
8. NCL ENSGALG00000032930 66655 0.989 - - - - - - 0.989 - - - nucleolin [Source:NCBI gene;Acc:396201]
9. SERPINE2 ENSGALG00000005135 16108 0.987 - - - - - - 0.987 - - - serpin family E member 2 [Source:NCBI gene;Acc:424805]
10. ZNF462 ENSGALG00000015451 12653 0.986 - - - - - - 0.986 - - - zinc finger protein 462 [Source:HGNC Symbol;Acc:HGNC:21684]
11. RALGDS ENSGALG00000003412 4478 0.986 - - - - - - 0.986 - - - ral guanine nucleotide dissociation stimulator, transcript variant X10
12. RND3 ENSGALG00000026313 9271 0.986 - - - - - - 0.986 - - - Rho family GTPase 3 [Source:HGNC Symbol;Acc:HGNC:671]
13. CAMK2D ENSGALG00000041635 3384 0.986 - - - - - - 0.986 - - - calcium/calmodulin dependent protein kinase II delta [Source:NCBI gene;Acc:422688]
14. SGK1 ENSGALG00000013971 2608 0.985 - - - - - - 0.985 - - - serum/glucocorticoid regulated kinase 1 [Source:NCBI gene;Acc:395133]
15. PRKX ENSGALG00000042759 2418 0.985 - - - - - - 0.985 - - - protein kinase X-linked [Source:HGNC Symbol;Acc:HGNC:9441]
16. WWP1 ENSGALG00000041795 2291 0.985 - - - - - - 0.985 - - - WW domain containing E3 ubiquitin protein ligase 1 [Source:NCBI gene;Acc:420212]
17. C5H15ORF57 C5H15ORF57 4113 0.985 - - - - - - 0.985 - - -
18. RBM24 ENSGALG00000012712 4138 0.985 - - - - - - 0.985 - - - RNA binding motif protein 24 [Source:NCBI gene;Acc:420846]
19. VPS13B 2293 0.985 - - - - - - 0.985 - - - vacuolar protein sorting 13 homolog B
20. TRAPPC8 ENSGALG00000015157 4308 0.985 - - - - - - 0.985 - - - trafficking protein particle complex 8, transcript variant X5
21. ARG2 ENSGALG00000009519 19523 0.985 - - - - - - 0.985 - - - arginase 2 [Source:NCBI gene;Acc:423272]
22. ANO5 ENSGALG00000003748 3959 0.985 - - - - - - 0.985 - - - anoctamin 5 [Source:NCBI gene;Acc:422973]
23. CENPE ENSGALG00000013208 12337 0.985 - - - - - - 0.985 - - - centromere protein E, transcript variant X4
24. GOLPH3 ENSGALG00000028267 9692 0.985 - - - - - - 0.985 - - - golgi phosphoprotein 3, transcript variant X1
25. C4H8ORF40 C4H8ORF40 6145 0.985 - - - - - - 0.985 - - -
26. LYN ENSGALG00000042321 3539 0.985 - - - - - - 0.985 - - - LYN proto-oncogene, Src family tyrosine kinase [Source:NCBI gene;Acc:421127]
27. C10orf54 C10orf54 2444 0.985 - - - - - - 0.985 - - -
28. ENSGALG00000027132 ENSGALG00000027132 1704 0.985 - - - - - - 0.985 - - -
29. KIF23 ENSGALG00000008095 9919 0.984 - - - - - - 0.984 - - - kinesin family member 23 [Source:NCBI gene;Acc:415567]
30. DIABLO ENSGALG00000004412 9499 0.984 - - - - - - 0.984 - - - diablo IAP-binding mitochondrial protein, transcript variant X3
31. SEPHS1 ENSGALG00000014575 10701 0.984 - - - - - - 0.984 - - - selenophosphate synthetase 1 [Source:NCBI gene;Acc:426612]
32. TMF1 ENSGALG00000013408 3344 0.983 - - - - - - 0.983 - - - TATA element modulatory factor 1 [Source:HGNC Symbol;Acc:HGNC:11870]
33. STRAP ENSGALG00000013092 13100 0.983 - - - - - - 0.983 - - - serine/threonine kinase receptor associated protein [Source:NCBI gene;Acc:418175]
34. TF ENSGALG00000006453 14007 0.982 - - - - - - 0.982 - - - transferrin (ovotransferrin) [Source:NCBI gene;Acc:396241]
35. OGT ENSGALG00000005425 31074 0.982 - - - - - - 0.982 - - - O-linked N-acetylglucosamine (GlcNAc) transferase [Source:HGNC Symbol;Acc:HGNC:8127]
36. CHTOP ENSGALG00000042129 24112 0.982 - - - - - - 0.982 - - - chromatin target of PRMT1 [Source:HGNC Symbol;Acc:HGNC:24511]
37. NDUFA4 ENSGALG00000025999 53323 0.981 - - - - - - 0.981 - - - NDUFA4, mitochondrial complex associated [Source:NCBI gene;Acc:772135]
38. AP1M1 ENSGALG00000003959 31761 0.981 - - - - - - 0.981 - - - adaptor related protein complex 1 subunit mu 1 [Source:NCBI gene;Acc:420149]
39. UBE2I ENSGALG00000006428 18421 0.978 - - - - - - 0.978 - - - ubiquitin conjugating enzyme E2 I [Source:NCBI gene;Acc:374123]
40. SPPL2A ENSGALG00000031348 16700 0.976 - - - - - - 0.976 - - - signal peptide peptidase like 2A [Source:NCBI gene;Acc:415450]
41. CCT8 ENSGALG00000015821 12161 0.975 - - - - - - 0.975 - - - chaperonin containing TCP1 subunit 8 [Source:NCBI gene;Acc:418486]
42. ANXA2 ENSGALG00000003770 18252 0.972 - - - - - - 0.972 - - - annexin A2 [Source:NCBI gene;Acc:396297]
43. ARHGDIA ENSGALG00000008443 39103 0.966 - - - - - - 0.966 - - - Rho GDP dissociation inhibitor alpha [Source:NCBI gene;Acc:769231]
44. UBE2D3 ENSGALG00000012311 39831 0.95 - - - - - - 0.950 - - - ubiquitin conjugating enzyme E2 D3 [Source:NCBI gene;Acc:422713]
45. ENSGALG00000021397 ENSGALG00000021397 51155 0.933 - - - - - - 0.933 - - -
46. PLS3 ENSGALG00000005930 12625 0.921 - - - - - - 0.921 - - - plastin 3 [Source:NCBI gene;Acc:422222]
47. OAZ OAZ 45951 0.896 - - - - - - 0.896 - - -
48. TBC1D23 ENSGALG00000015273 4856 0.875 - - - - - - 0.875 - - - TBC1 domain family member 23 [Source:NCBI gene;Acc:418383]
49. DCN ENSGALG00000011274 4166 0.872 - - - - - - - - - 0.872 decorin [Source:NCBI gene;Acc:417892]
50. SMARCB1 ENSGALG00000005983 20548 0.871 - - - - - - 0.871 - - - SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 [Source:NCBI gene;Acc:769489]
51. MEIS2 ENSGALG00000039118 81591 0.857 - - - - - - 0.857 - - - Meis homeobox 2 [Source:NCBI gene;Acc:395588]
52. HSP90AB1 ENSGALG00000010175 77935 0.852 - - - - - - 0.852 - - - heat shock protein 90 alpha family class B member 1 [Source:NCBI gene;Acc:396188]
53. RPLP2 ENSGALG00000034811 152607 0.837 - - - - - - 0.837 - - - ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
54. ZNF217 ZNF217 14511 0.83 - - - - - - 0.830 - - -
55. SWIP-1 SWIP-1 6024 0.83 - - - - - - - 0.830 - -
56. CCDC88A ENSGALG00000043587 2208 0.822 - - - - - - - 0.822 - - coiled-coil domain containing 88A [Source:HGNC Symbol;Acc:HGNC:25523]
57. SH3BGRL ENSGALG00000007128 18708 0.806 - - - - - - - 0.806 - - SH3 domain binding glutamate rich protein like [Source:NCBI gene;Acc:422277]
58. LIMCH1 ENSGALG00000014258 1987 0.796 - - - - - - - - - 0.796 LIM and calponin homology domains 1 [Source:HGNC Symbol;Acc:HGNC:29191]
59. OSBPL5 ENSGALG00000006401 3555 0.795 - - - - - - - 0.795 - - oxysterol binding protein like 5 [Source:HGNC Symbol;Acc:HGNC:16392]
60. RYK ENSGALG00000006488 10533 0.794 - - - - - - - 0.794 - - receptor-like tyrosine kinase [Source:HGNC Symbol;Acc:HGNC:10481]
61. CKI CKI 2845 0.783 - - - - - - - 0.783 - -
62. PCDHGC3 ENSGALG00000028565 18583 0.775 - - - - - - - 0.775 - - Gallus gallus protocadherin gamma subfamily A, 2 (PCDHGA2), mRNA. [Source:RefSeq mRNA;Acc:NM_001245037]
63. SPON1 ENSGALG00000038775 16503 0.769 - - - - 0.769 - - - - - spondin 1 [Source:NCBI gene;Acc:395657]
64. EN1 ENSGALG00000042389 3051 0.768 - - - - 0.768 - - - - - engrailed homeobox 1 [Source:HGNC Symbol;Acc:HGNC:3342]
65. FGF12 ENSGALG00000036971 2631 0.767 - - - - - - - 0.767 - - fibroblast growth factor 12 [Source:NCBI gene;Acc:395704]
66. CAPN5 ENSGALG00000040478 2414 0.766 - - - - - - - 0.766 - - calpain 5 [Source:HGNC Symbol;Acc:HGNC:1482]
67. PRKACB ENSGALG00000028530 12506 0.765 - - - - - - - 0.765 - - protein kinase cAMP-activated catalytic subunit beta, transcript variant X2
68. MAFF ENSGALG00000012277 3392 0.764 - - - - - - - 0.764 - - MAF bZIP transcription factor F [Source:NCBI gene;Acc:395519]
69. MAB21L1 ENSGALG00000045052 1677 0.762 - - - - - - - - - 0.762 mab-21 like 1 [Source:NCBI gene;Acc:395208]
70. GALM ENSGALG00000013828 1546 0.755 - - - - - - - 0.755 - - galactose mutarotase [Source:HGNC Symbol;Acc:HGNC:24063]
71. TPST2 ENSGALG00000005626 945 0.755 - - - - - - - 0.755 - - tyrosylprotein sulfotransferase 2 [Source:NCBI gene;Acc:416910]
72. BDH2 ENSGALG00000012338 2446 0.752 - - - - - - - 0.752 - - 3-hydroxybutyrate dehydrogenase 2 [Source:HGNC Symbol;Acc:HGNC:32389]
73. SPRY2 ENSGALG00000016906 760 0.751 - - - - - - - 0.751 - - sprouty RTK signaling antagonist 2 [Source:NCBI gene;Acc:395584]
74. U3 U3 1604 0.75 - - - - - - - - - 0.750
75. GNAI2 ENSGALG00000035645 9535 0.748 - - - - - - - 0.748 - - G protein subunit alpha i2 [Source:HGNC Symbol;Acc:HGNC:4385]
76. KCNJ8 ENSGALG00000026373 1263 0.748 - - - - - - - 0.748 - - potassium voltage-gated channel subfamily J member 8 [Source:NCBI gene;Acc:395973]
77. RAMP2 ENSGALG00000024449 5860 0.747 - - - - - - - 0.747 - - receptor activity modifying protein 2 [Source:NCBI gene;Acc:420022]
78. DST ENSGALG00000016289 3947 0.747 - - - - - - - 0.747 - - dystonin [Source:HGNC Symbol;Acc:HGNC:1090]
79. C1QTNF3 ENSGALG00000027887 8646 0.746 - - - - 0.746 - - - - - C1q and tumor necrosis factor related protein 3, transcript variant X1
80. PAX1 ENSGALG00000039040 3339 0.746 - - - - 0.746 - - - - - paired box 1 [Source:HGNC Symbol;Acc:HGNC:8615]
81. EP300 ENSGALG00000011992 12490 0.743 - - - - - - - 0.743 - - E1A binding protein p300 [Source:HGNC Symbol;Acc:HGNC:3373]
82. ENSGALG00000013067 ENSGALG00000013067 10741 0.742 - - - - - - - 0.742 - -
83. TMEM196 ENSGALG00000010865 239 0.742 - - - - - - - 0.742 - - transmembrane protein 196 [Source:HGNC Symbol;Acc:HGNC:22431]
84. ASPG ENSGALG00000011572 4984 0.74 - - - - - - - 0.740 - - asparaginase [Source:HGNC Symbol;Acc:HGNC:20123]
85. NENF ENSGALG00000009821 4826 0.74 - - - - - - - 0.740 - - neudesin neurotrophic factor [Source:HGNC Symbol;Acc:HGNC:30384]
86. LECT1 LECT1 12694 0.74 - - - - 0.740 - - - - -
87. CALD1 ENSGALG00000033471 8950 0.739 - - - - - - - 0.739 - - caldesmon 1 [Source:NCBI gene;Acc:373965]
88. WNK4 ENSGALG00000032191 962 0.735 - - - - - - - 0.735 - - WNK lysine deficient protein kinase 4 [Source:HGNC Symbol;Acc:HGNC:14544]
89. DSP ENSGALG00000012790 17884 0.735 - 0.735 - - - - - - - - desmoplakin [Source:HGNC Symbol;Acc:HGNC:3052]
90. SOX11 ENSGALG00000016397 12144 0.734 - - - - - - - 0.734 - - SRY-box 11 [Source:NCBI gene;Acc:396104]
91. MYLK ENSGALG00000011708 10434 0.733 - - - - - - - - - 0.733 Gallus gallus myosin light chain kinase (MYLK), transcript variant 1, mRNA. [Source:RefSeq mRNA;Acc:NM_001322361]
92. MEOX2 ENSGALG00000010794 1556 0.733 - - - - 0.733 - - - - - mesenchyme homeobox 2 [Source:NCBI gene;Acc:374137]
93. BRT-1 BRT-1 26083 0.731 - - - - 0.731 - - - - -
94. PON2 ENSGALG00000009689 1416 0.731 - - - - - - - - - 0.731 paraoxonase 2 [Source:NCBI gene;Acc:395830]
95. TMEM182 ENSGALG00000038936 274 0.728 - - - - 0.728 - - - - - transmembrane protein 182 [Source:HGNC Symbol;Acc:HGNC:26391]
96. DISC1 ENSGALG00000039349 1348 0.727 - - - - - - - 0.727 - - DISC1 scaffold protein [Source:HGNC Symbol;Acc:HGNC:2888]
97. COLEC10 ENSGALG00000033144 3436 0.726 - - - - - - - - - 0.726 collectin subfamily member 10 [Source:NCBI gene;Acc:420281]
98. SCPEP1 ENSGALG00000003185 2322 0.726 - - - - - - - 0.726 - - serine carboxypeptidase 1 [Source:NCBI gene;Acc:417403]
99. NUMB ENSGALG00000009300 4220 0.726 - - - - - - - 0.726 - - NUMB, endocytic adaptor protein [Source:NCBI gene;Acc:395639]
100. NPM1 ENSGALG00000002197 24109 0.726 - - - - - - - - - 0.726 nucleophosmin [Source:NCBI gene;Acc:396203]

There are 37 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA