Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for SDC1

Gene Name Gene ID Reads Annotation
SDC1 ENSGALG00000016480 13737 syndecan 1 [Source:HGNC Symbol;Acc:HGNC:10658]











Genes with expression patterns similar to SDC1

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. SDC1 ENSGALG00000016480 13737 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 syndecan 1 [Source:HGNC Symbol;Acc:HGNC:10658]
2. TUSC3 ENSGALG00000013674 2848 1.467 - - - - - - 0.766 0.701 - - tumor suppressor candidate 3 [Source:HGNC Symbol;Acc:HGNC:30242]
3. HMBS ENSGALG00000042939 13360 1 - - - - - - 1.000 - - - hydroxymethylbilane synthase [Source:HGNC Symbol;Acc:HGNC:4982]
4. HSPA5 ENSGALG00000001000 40342 0.96 - - - - - - 0.960 - - - heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) [Source:NCBI gene;Acc:396487]
5. SALL4 ENSGALG00000041365 6760 0.864 - - - - - - - 0.864 - - spalt like transcription factor 4 [Source:NCBI gene;Acc:769286]
6. ANP32E ENSGALG00000039891 35925 0.859 - - - - - - 0.859 - - - acidic nuclear phosphoprotein 32 family member E [Source:NCBI gene;Acc:426109]
7. RNF8 ENSGALG00000023256 5495 0.848 - - - - - - - 0.848 - - ring finger protein 8 [Source:HGNC Symbol;Acc:HGNC:10071]
8. RANBP10 ENSGALG00000001439 4003 0.845 - - - - - - - 0.845 - - RAN binding protein 10 [Source:HGNC Symbol;Acc:HGNC:29285]
9. RPL23 ENSGALG00000001634 246592 0.835 0.835 - - - - - - - - - Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
10. C15ORF23 C15ORF23 14264 0.834 - - - - - - - 0.834 - -
11. C1H2ORF49 ENSGALG00000016796 2976 0.83 - - - - - - - 0.830 - - chromosome 1 open reading frame, human C2orf49 [Source:NCBI gene;Acc:418725]
12. SRP68 ENSGALG00000002062 7370 0.829 - - - - - - - 0.829 - - signal recognition particle 68 [Source:NCBI gene;Acc:417363]
13. ENSGALG00000005727 ENSGALG00000005727 4334 0.829 - - - - - - - 0.829 - -
14. EIF2B2 ENSGALG00000010301 10772 0.821 - - - - - - - 0.821 - - eukaryotic translation initiation factor 2B subunit beta [Source:NCBI gene;Acc:423359]
15. FBXO3 ENSGALG00000034029 15089 0.816 - - - - - - - 0.816 - - F-box protein 3 [Source:HGNC Symbol;Acc:HGNC:13582]
16. POLA1 ENSGALG00000016312 9440 0.816 - - - - - - - 0.816 - - DNA polymerase alpha 1, catalytic subunit [Source:HGNC Symbol;Acc:HGNC:9173]
17. ADAT2 ENSGALG00000019976 4169 0.814 - - - - - - - 0.814 - - adenosine deaminase, tRNA specific 2
18. ALDH7A1 ENSGALG00000008229 5891 0.813 - - - - - - - 0.813 - - aldehyde dehydrogenase 7 family member A1 [Source:HGNC Symbol;Acc:HGNC:877]
19. FBXW7 ENSGALG00000010103 5982 0.812 - - - - - - - 0.812 - - F-box and WD repeat domain containing 7 [Source:HGNC Symbol;Acc:HGNC:16712]
20. MRPL1 ENSGALG00000010324 5972 0.811 - - - - - - - 0.811 - - mitochondrial ribosomal protein L1 [Source:HGNC Symbol;Acc:HGNC:14275]
21. AKAP9 ENSGALG00000040724 7446 0.811 - - - - - - - 0.811 - - A-kinase anchoring protein 9 [Source:NCBI gene;Acc:395695]
22. TRIM33 ENSGALG00000001976 7404 0.811 - - - - - - - 0.811 - - tripartite motif containing 33 [Source:HGNC Symbol;Acc:HGNC:16290]
23. RPS21 ENSGALG00000005338 293390 0.811 0.811 - - - - - - - - - ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
24. MYCL ENSGALG00000024047 10367 0.81 - - - - - - - 0.810 - - MYCL proto-oncogene, bHLH transcription factor [Source:HGNC Symbol;Acc:HGNC:7555]
25. LTV1 ENSGALG00000013765 2917 0.808 - - - - - - - 0.808 - - LTV1 ribosome biogenesis factor
26. SLC35B1 ENSGALG00000035057 10683 0.808 - - - - - - - 0.808 - - solute carrier family 35 member B1 [Source:NCBI gene;Acc:395185]
27. FNDC3AL ENSGALG00000004169 4980 0.808 - - - - - - - 0.808 - - fibronectin type III domain containing 3A-like, transcript variant X3
28. FAM217B ENSGALG00000026542 2066 0.805 - - - - - - - 0.805 - - family with sequence similarity 217 member B [Source:HGNC Symbol;Acc:HGNC:16170]
29. NEK7 ENSGALG00000002216 4532 0.804 - - - - - - - 0.804 - - NIMA related kinase 7 [Source:NCBI gene;Acc:424350]
30. TXNL1 ENSGALG00000033862 13899 0.802 - - - - - - - 0.802 - - thioredoxin like 1 [Source:HGNC Symbol;Acc:HGNC:12436]
31. POP5 ENSGALG00000007124 10365 0.801 - - - - - - - 0.801 - - POP5 homolog, ribonuclease P/MRP subunit [Source:HGNC Symbol;Acc:HGNC:17689]
32. HYOU1 ENSGALG00000007659 3555 0.8 - - - - - - - 0.800 - - hypoxia up-regulated 1 [Source:NCBI gene;Acc:428251]
33. MCM3 ENSGALG00000016676 16934 0.8 - - - - - - - 0.800 - - minichromosome maintenance complex component 3 [Source:NCBI gene;Acc:422043]
34. DARS2 ENSGALG00000023749 2386 0.8 - - - - - - - 0.800 - - aspartyl-tRNA synthetase 2, mitochondrial [Source:HGNC Symbol;Acc:HGNC:25538]
35. RPL36 ENSGALG00000000474 237707 0.799 0.799 - - - - - - - - - ribosomal protein L36 [Source:NCBI gene;Acc:373936]
36. THOP1 ENSGALG00000041934 10122 0.799 - - - - - - - 0.799 - - thimet oligopeptidase 1 [Source:HGNC Symbol;Acc:HGNC:11793]
37. PSMD6 ENSGALG00000007315 3906 0.799 - - - - - - - 0.799 - - proteasome 26S subunit, non-ATPase 6 [Source:HGNC Symbol;Acc:HGNC:9564]
38. SF3A2 ENSGALG00000021679 12580 0.799 - - - - - - - 0.799 - - splicing factor 3a subunit 2 [Source:NCBI gene;Acc:420077]
39. MKP3 MKP3 4418 0.797 0.797 - - - - - - - - -
40. KLF3 ENSGALG00000041717 2787 0.796 - - - - - - - 0.796 - - Kruppel like factor 3 [Source:HGNC Symbol;Acc:HGNC:16516]
41. NDUFS3 ENSGALG00000008084 12471 0.796 - - - - - - - 0.796 - - NADH:ubiquinone oxidoreductase core subunit S3 [Source:NCBI gene;Acc:423179]
42. AP4E1 2726 0.795 - - - - - - - 0.795 - - adaptor related protein complex 4 epsilon 1 subunit, transcript variant X2
43. RPAP2 ENSGALG00000005953 2085 0.793 - - - - - - - 0.793 - - RNA polymerase II associated protein 2 [Source:HGNC Symbol;Acc:HGNC:25791]
44. MRPL53 ENSGALG00000037867 6100 0.792 - - - - - - - 0.792 - - mitochondrial ribosomal protein L53 [Source:NCBI gene;Acc:420196]
45. HS2ST1 ENSGALG00000028423 4153 0.79 - - - - - - - 0.790 - - heparan sulfate 2-O-sulfotransferase 1 [Source:NCBI gene;Acc:395140]
46. BTAF1 ENSGALG00000030598 3556 0.788 - - - - - - - 0.788 - - B-TFIID TATA-box binding protein associated factor 1 [Source:HGNC Symbol;Acc:HGNC:17307]
47. HSPE1 ENSGALG00000009070 87567 0.788 0.788 - - - - - - - - - heat shock protein family E (Hsp10) member 1 [Source:NCBI gene;Acc:395948]
48. TBX3 ENSGALG00000036043 2888 0.787 - - - - - - - 0.787 - - T-box 3 [Source:NCBI gene;Acc:374202]
49. RPL27 ENSGALG00000002837 302752 0.785 0.785 - - - - - - - - - ribosomal protein L27 [Source:NCBI gene;Acc:396280]
50. MED4 ENSGALG00000016995 3309 0.785 - - - - - - - 0.785 - - mediator complex subunit 4 [Source:HGNC Symbol;Acc:HGNC:17903]
51. ELL ENSGALG00000033513 6536 0.784 - - - - - - - 0.784 - - elongation factor for RNA polymerase II [Source:NCBI gene;Acc:420124]
52. IL17RD ENSGALG00000005499 5844 0.782 0.782 - - - - - - - - - interleukin 17 receptor D [Source:NCBI gene;Acc:395186]
53. ANKRA2 ENSGALG00000013511 3460 0.782 - - - - - - - 0.782 - - ankyrin repeat family A member 2 [Source:NCBI gene;Acc:426153]
54. LDHB ENSGALG00000035836 169726 0.781 0.781 - - - - - - - - - lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
55. SEPSECS ENSGALG00000014386 2611 0.78 - - - - - - - 0.780 - - Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase [Source:NCBI gene;Acc:422808]
56. AP3M2 ENSGALG00000038155 3372 0.78 - - - - - - - 0.780 - - adaptor related protein complex 3 subunit mu 2 [Source:HGNC Symbol;Acc:HGNC:570]
57. SALL1 ENSGALG00000039238 3740 0.779 - - - - - - - 0.779 - - spalt like transcription factor 1 [Source:NCBI gene;Acc:395446]
58. MYST2 MYST2 8078 0.778 - - - - - - - 0.778 - -
59. SF3A1 ENSGALG00000007937 11716 0.777 - - - - - - - 0.777 - - splicing factor 3a subunit 1 [Source:NCBI gene;Acc:427717]
60. FBXW2 ENSGALG00000000864 2995 0.775 - - - - - - - 0.775 - - F-box and WD repeat domain containing 2 [Source:NCBI gene;Acc:417088]
61. MRPS25 ENSGALG00000008506 12131 0.774 - - - - - - - 0.774 - - mitochondrial ribosomal protein S25 [Source:NCBI gene;Acc:416129]
62. PDRG1 ENSGALG00000035111 9863 0.774 - - - - - - - 0.774 - - p53 and DNA damage regulated 1 [Source:HGNC Symbol;Acc:HGNC:16119]
63. PSMD7 ENSGALG00000000707 26350 0.773 - - - - - - - 0.773 - - proteasome 26S subunit, non-ATPase 7 [Source:HGNC Symbol;Acc:HGNC:9565]
64. LYAR ENSGALG00000015000 10756 0.773 - - - - - - - 0.773 - - Ly1 antibody reactive [Source:HGNC Symbol;Acc:HGNC:26021]
65. NXT2 ENSGALG00000008092 2477 0.773 - - - - - - - 0.773 - - nuclear transport factor 2 like export factor 2 [Source:NCBI gene;Acc:422346]
66. MED17 ENSGALG00000017218 5821 0.772 - - - - - - - 0.772 - - mediator complex subunit 17 [Source:NCBI gene;Acc:419000]
67. ECI2 ENSGALG00000012809 3692 0.769 - - - - - - - 0.769 - - enoyl-CoA delta isomerase 2 [Source:HGNC Symbol;Acc:HGNC:14601]
68. LPIN1 ENSGALG00000016456 1044 0.769 - - - - - - - 0.769 - - lipin 1 [Source:HGNC Symbol;Acc:HGNC:13345]
69. GBX-1 GBX-1 1430 0.767 - - - - - - 0.767 - - -
70. PIK3C2B ENSGALG00000037043 4522 0.766 - - - - - - 0.766 - - - phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta [Source:HGNC Symbol;Acc:HGNC:8972]
71. SACS ENSGALG00000017120 4906 0.766 - - - - - - - 0.766 - - sacsin molecular chaperone [Source:HGNC Symbol;Acc:HGNC:10519]
72. RAP1GDS1 ENSGALG00000012222 10078 0.766 - - - - - - 0.766 - - - rap1 GTPase-GDP dissociation stimulator 1 [Source:NCBI gene;Acc:422701]
73. CHALK5 CHALK5 1351 0.766 - - - - - - - 0.766 - -
74. PRRC2B 1997 0.766 - - - - - - 0.766 - - - proline rich coiled-coil 2B, transcript variant X12
75. UTP14A ENSGALG00000024039 8532 0.766 - - - - - - 0.766 - - - UTP14A small subunit processome component
76. ECE-1 ECE-1 3057 0.766 - - - - - - 0.766 - - -
77. WDYHV1 ENSGALG00000030059 2961 0.766 - - - - - - 0.766 - - - WDYHV motif containing 1 [Source:HGNC Symbol;Acc:HGNC:25490]
78. KIAA0922 4430 0.765 - - - - - - 0.765 - - - KIAA0922, transcript variant X4
79. RPS24 ENSGALG00000004871 173117 0.765 0.765 - - - - - - - - - ribosomal protein S24 [Source:NCBI gene;Acc:423726]
80. DEDD ENSGALG00000043129 3422 0.765 - - - - - - - 0.765 - - death effector domain containing [Source:HGNC Symbol;Acc:HGNC:2755]
81. THBS4 ENSGALG00000014804 4228 0.764 - - - - - - 0.764 - - - Gallus gallus thrombospondin 4 (THBS4), mRNA. [Source:RefSeq mRNA;Acc:NM_001321549]
82. MRPS27 ENSGALG00000015002 6541 0.763 - - - - - - 0.763 - - - mitochondrial ribosomal protein S27 [Source:HGNC Symbol;Acc:HGNC:14512]
83. MAPKAPK2 ENSGALG00000000883 6174 0.763 - - - - - - 0.763 - - - mitogen-activated protein kinase-activated protein kinase 2 [Source:HGNC Symbol;Acc:HGNC:6887]
84. AP2M1 ENSGALG00000008432 16249 0.762 - - - - - - 0.762 - - - adaptor related protein complex 2 mu 1 subunit [Source:NCBI gene;Acc:770246]
85. C1H21ORF33 ENSGALG00000019171 8910 0.762 - - - - - - 0.762 - - - chromosome 1 open reading frame, human C21orf33 [Source:NCBI gene;Acc:418552]
86. ENSGALG00000001861 ENSGALG00000001861 10150 0.762 - - - - - - 0.762 - - -
87. PRRX1 ENSGALG00000003324 4859 0.762 - - - - - - 0.762 - - - paired related homeobox 1 [Source:NCBI gene;Acc:373941]
88. NAP1L4 ENSGALG00000006446 10868 0.762 - - - - - - 0.762 - - - nucleosome assembly protein 1 like 4 [Source:NCBI gene;Acc:423087]
89. TOR1A ENSGALG00000004165 4487 0.762 - - - - - - - 0.762 - - torsin family 1 member A [Source:NCBI gene;Acc:417190]
90. HSPA14 ENSGALG00000035201 7372 0.762 - - - - - - 0.762 - - - heat shock protein family A (Hsp70) member 14
91. TDP2 ENSGALG00000013637 6595 0.762 - - - - - - 0.762 - - - tyrosyl-DNA phosphodiesterase 2 [Source:NCBI gene;Acc:421007]
92. RDX ENSGALG00000017153 6734 0.762 - - - - - - - 0.762 - - radixin [Source:NCBI gene;Acc:395511]
93. GPC3 ENSGALG00000006087 3744 0.762 - - - - - - - 0.762 - - glypican 3 [Source:HGNC Symbol;Acc:HGNC:4451]
94. ABCB10 ENSGALG00000011096 1407 0.761 - - - - - - - 0.761 - - ATP binding cassette subfamily B member 10 [Source:HGNC Symbol;Acc:HGNC:41]
95. ARCN1 ENSGALG00000007430 21499 0.761 - - - - - - 0.761 - - - archain 1 [Source:NCBI gene;Acc:770561]
96. NOL12 ENSGALG00000012410 5658 0.761 - - - - - - - 0.761 - - nucleolar protein 12
97. TALPID3 TALPID3 1896 0.761 - - - - - - - 0.761 - -
98. DNMT3B ENSGALG00000041461 12959 0.761 - - - - - - 0.761 - - - DNA methyltransferase 3 beta [Source:NCBI gene;Acc:419287]
99. RPS23 ENSGALG00000015617 430299 0.759 0.759 - - - - - - - - - ribosomal protein S23
100. METTL16 ENSGALG00000014901 3720 0.758 - - - - - - - 0.758 - - methyltransferase like 16 [Source:NCBI gene;Acc:431184]

There are 135 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA