Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for SCN9A

Gene Name Gene ID Reads Annotation
SCN9A ENSGALG00000027793 161 sodium voltage-gated channel alpha subunit 9 [Source:NCBI gene;Acc:395946]











Genes with expression patterns similar to SCN9A

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. SCN9A ENSGALG00000027793 161 7 - - 1.000 1.000 1.000 1.000 1.000 1.000 - 1.000 sodium voltage-gated channel alpha subunit 9 [Source:NCBI gene;Acc:395946]
2. CAPRIN1 ENSGALG00000013532 1699 1.574 - - - - - - 0.800 - - 0.774 cell cycle associated protein 1 [Source:NCBI gene;Acc:426151]
3. CCDC135 CCDC135 220 0.948 - - - - - - 0.948 - - -
4. ZC3H12C ENSGALG00000017154 59 0.946 - - - - - - 0.946 - - - zinc finger CCCH-type containing 12C [Source:HGNC Symbol;Acc:HGNC:29362]
5. CFH ENSGALG00000002431 31 0.946 - - - - - - 0.946 - - - complement factor H, transcript variant X1
6. ENSGALG00000003817 ENSGALG00000003817 45 0.943 - - - - - - 0.943 - - -
7. TMEM150C ENSGALG00000011175 218 0.941 - - - - - - 0.941 - - - transmembrane protein 150C [Source:HGNC Symbol;Acc:HGNC:37263]
8. PLXNB2 ENSGALG00000039861 338 0.941 - - - - - - 0.941 - - - plexin B2 [Source:HGNC Symbol;Acc:HGNC:9104]
9. WBP2NL ENSGALG00000011908 23 0.941 - - - - - - 0.941 - - - Gallus gallus WBP2 N-terminal like (WBP2NL), mRNA. [Source:RefSeq mRNA;Acc:NM_001318465]
10. SKI ENSGALG00000001229 50 0.939 - - - - - - 0.939 - - - SKI proto-oncogene [Source:NCBI gene;Acc:428181]
11. NBEAL2 ENSGALG00000039120 277 0.936 - - - - - - 0.936 - - - neurobeachin like 2 [Source:HGNC Symbol;Acc:HGNC:31928]
12. NCBP2 ENSGALG00000006843 938 0.936 - - - - - - 0.936 - - - nuclear cap binding protein subunit 2, 20kDa [Source:NCBI gene;Acc:424889]
13. MICAL3 ENSGALG00000013042 90 0.935 - - - - - - 0.935 - - - microtubule associated monooxygenase, calponin and LIM domain containing 3 [Source:HGNC Symbol;Acc:HGNC:24694]
14. TRPC6 ENSGALG00000029416 281 0.933 - - - - - - 0.933 - - - transient receptor potential cation channel subfamily C member 6 [Source:HGNC Symbol;Acc:HGNC:12338]
15. NPY2R ENSGALG00000009280 29 0.932 - - - - - - 0.932 - - - neuropeptide Y receptor Y2 [Source:NCBI gene;Acc:422405]
16. ARHGAP20 ENSGALG00000017150 100 0.929 - - - - - - 0.929 - - - Rho GTPase activating protein 20 [Source:HGNC Symbol;Acc:HGNC:18357]
17. GPSM2 ENSGALG00000002090 50 0.926 - - - - - - 0.926 - - - G protein signaling modulator 2 [Source:HGNC Symbol;Acc:HGNC:29501]
18. C8G ENSGALG00000040644 443 0.926 - - - - - - 0.926 - - - complement C8 gamma chain [Source:HGNC Symbol;Acc:HGNC:1354]
19. NOL8 ENSGALG00000004750 1433 0.925 - - - - - - 0.925 - - - nucleolar protein 8 [Source:HGNC Symbol;Acc:HGNC:23387]
20. UBAC2 ENSGALG00000016880 1343 0.923 - - - - - - 0.923 - - - UBA domain containing 2 [Source:NCBI gene;Acc:418778]
21. CTSB ENSGALG00000030016 177 0.917 - - - - - - 0.917 - - - cathepsin B [Source:NCBI gene;Acc:396329]
22. TFAP2C ENSGALG00000007690 768 0.916 - - - - - - 0.916 - - - transcription factor AP-2 gamma [Source:HGNC Symbol;Acc:HGNC:11744]
23. RAPGEF5 ENSGALG00000034024 1264 0.913 - - - - - - 0.913 - - - Rap guanine nucleotide exchange factor 5 [Source:HGNC Symbol;Acc:HGNC:16862]
24. SNX16 ENSGALG00000029678 1104 0.91 - - - - - - 0.910 - - - sorting nexin 16 [Source:NCBI gene;Acc:420202]
25. CCDC117 ENSGALG00000005784 185 0.909 - - - - - - 0.909 - - - coiled-coil domain containing 117 [Source:HGNC Symbol;Acc:HGNC:26599]
26. FAM47E-STBD1 FAM47E-STBD1 1148 0.905 - - - - - - 0.905 - - -
27. DTNBP1 ENSGALG00000012703 539 0.904 - - - - - - 0.904 - - - dystrobrevin binding protein 1 [Source:NCBI gene;Acc:420840]
28. CPE ENSGALG00000027788 153 0.904 - - - - - - 0.904 - - - carboxypeptidase E [Source:HGNC Symbol;Acc:HGNC:2303]
29. RALGAPA2 240 0.903 - - - - - - 0.903 - - - Ral GTPase activating protein, alpha subunit 2 (catalytic), transcript variant X6
30. SLC5A11 ENSGALG00000005933 28 0.902 - - - - - - 0.902 - - - solute carrier family 5 member 11 [Source:HGNC Symbol;Acc:HGNC:23091]
31. BAI3 BAI3 106 0.901 - - - - - - 0.901 - - -
32. SLC27A6 ENSGALG00000000184 98 0.901 - - - - - - 0.901 - - - solute carrier family 27 member 6 [Source:HGNC Symbol;Acc:HGNC:11000]
33. MAN1B1 ENSGALG00000037375 308 0.9 - - - - - - 0.900 - - - mannosidase alpha class 1B member 1 [Source:HGNC Symbol;Acc:HGNC:6823]
34. PCYOX1L ENSGALG00000040340 2162 0.898 - - - - - - 0.898 - - - prenylcysteine oxidase 1 like [Source:HGNC Symbol;Acc:HGNC:28477]
35. GABRG2 ENSGALG00000038042 211 0.896 - - - - - - 0.896 - - - gamma-aminobutyric acid type A receptor gamma2 subunit [Source:NCBI gene;Acc:396289]
36. ZFHX4 ENSGALG00000037164 811 0.896 - - - - - - 0.896 - - - zinc finger homeobox 4 [Source:HGNC Symbol;Acc:HGNC:30939]
37. NMT2 ENSGALG00000008791 542 0.895 - - - - - - 0.895 - - - N-myristoyltransferase 2 [Source:HGNC Symbol;Acc:HGNC:7858]
38. CNTN1 ENSGALG00000009523 158 0.893 - - - - - - 0.893 - - - contactin 1 [Source:NCBI gene;Acc:417786]
39. WDR59 ENSGALG00000002798 815 0.89 - - - - - - 0.890 - - - WD repeat domain 59 [Source:NCBI gene;Acc:415688]
40. OSBPL2 ENSGALG00000005195 94 0.888 - - - - - - 0.888 - - - oxysterol binding protein like 2 [Source:NCBI gene;Acc:419227]
41. NALCN ENSGALG00000016868 164 0.886 - - - - - - 0.886 - - - sodium leak channel, non-selective [Source:HGNC Symbol;Acc:HGNC:19082]
42. TM2D1 ENSGALG00000020614 764 0.886 - - - - - - 0.886 - - - TM2 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:24142]
43. PLEK2 ENSGALG00000009562 706 0.884 - - - - - - 0.884 - - - pleckstrin 2 [Source:NCBI gene;Acc:423278]
44. SHC2 ENSGALG00000001289 2140 0.883 - - - - - - 0.883 - - - SHC (Src homology 2 domain containing) transforming protein 2, transcript variant X2
45. C5NT1AL ENSGALG00000006608 277 0.883 - - - - - - 0.883 - - - cytosolic 5'-nucleotidase 1A-like, transcript variant X2
46. CACTIN ENSGALG00000024391 1408 0.881 - - - - - - 0.881 - - - cactin, spliceosome C complex subunit [Source:HGNC Symbol;Acc:HGNC:29938]
47. CVG1 CVG1 636 0.881 - - - - - - 0.881 - - -
48. ADAMTSL1 1479 0.878 - - - - - - 0.878 - - - ADAMTS like 1, transcript variant X3
49. PYGO1 ENSGALG00000004369 527 0.878 - - - - - - 0.878 - - - pygopus family PHD finger 1 [Source:NCBI gene;Acc:415408]
50. MPP2 ENSGALG00000035580 383 0.878 - - - - - - 0.878 - - - membrane palmitoylated protein 2 [Source:HGNC Symbol;Acc:HGNC:7220]
51. DHX35 ENSGALG00000003658 1090 0.877 - - - - - - 0.877 - - - DEAH-box helicase 35 [Source:HGNC Symbol;Acc:HGNC:15861]
52. CYP2U1 ENSGALG00000027908 13 0.873 - - - - - - - - - 0.873 cytochrome P450 family 2 subfamily U member 1 [Source:HGNC Symbol;Acc:HGNC:20582]
53. IMPAD1 ENSGALG00000041573 801 0.87 - - - - - - 0.870 - - - inositol monophosphatase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:26019]
54. CCK ENSGALG00000029788 213 0.87 - - - - - - 0.870 - - - cholecystokinin [Source:NCBI gene;Acc:414884]
55. DPYSL4 ENSGALG00000010490 3431 0.867 - - - - - - 0.867 - - - dihydropyrimidinase like 4 [Source:HGNC Symbol;Acc:HGNC:3016]
56. CKV1.1 CKV1.1 140 0.861 - - - - - - 0.861 - - -
57. VPS37B ENSGALG00000003743 185 0.86 - - - - - - 0.860 - - - VPS37B, ESCRT-I subunit [Source:HGNC Symbol;Acc:HGNC:25754]
58. IMMP2L ENSGALG00000027876 962 0.858 - - - - - - 0.858 - - - inner mitochondrial membrane peptidase subunit 2 [Source:HGNC Symbol;Acc:HGNC:14598]
59. RIMKLB ENSGALG00000040184 281 0.858 - - - - - - 0.858 - - - ribosomal modification protein rimK like family member B [Source:HGNC Symbol;Acc:HGNC:29228]
60. OSTM1 ENSGALG00000015306 192 0.857 - - - - - - 0.857 - - - osteopetrosis associated transmembrane protein 1 [Source:NCBI gene;Acc:421773]
61. MIF4GD ENSGALG00000026715 41 0.853 - - - - - - - - - 0.853 MIF4G domain containing [Source:HGNC Symbol;Acc:HGNC:24030]
62. LOC422106 ENSGALG00000019757 453 0.85 - - - - - - 0.850 - - - uncharacterized LOC422106
63. DENND1A ENSGALG00000001157 503 0.849 - - - - - - 0.849 - - - DENN domain containing 1A [Source:HGNC Symbol;Acc:HGNC:29324]
64. QARS ENSGALG00000029980 4207 0.849 - - - - - - 0.849 - - - glutaminyl-tRNA synthetase [Source:NCBI gene;Acc:416057]
65. FICD ENSGALG00000004858 171 0.847 - - - - - - 0.847 - - - FIC domain containing [Source:HGNC Symbol;Acc:HGNC:18416]
66. C26H6ORF89 C26H6ORF89 1826 0.846 - - - - - - 0.846 - - -
67. AP1S2 ENSGALG00000016551 421 0.845 - - - - - - 0.845 - - - adaptor related protein complex 1 subunit sigma 2 [Source:NCBI gene;Acc:418621]
68. TMEM248 ENSGALG00000033954 248 0.843 - - - - - - 0.843 - - - transmembrane protein 248 [Source:HGNC Symbol;Acc:HGNC:25476]
69. CSNK1A1 495 0.841 - - - - - - 0.841 - - - casein kinase 1 alpha 1, transcript variant X4
70. ATG2B ENSGALG00000042088 918 0.84 - - - - - - 0.840 - - - autophagy related 2B [Source:HGNC Symbol;Acc:HGNC:20187]
71. MPZL3 ENSGALG00000021271 1857 0.84 - - - - - - 0.840 - - - myelin protein zero like 3 [Source:NCBI gene;Acc:419778]
72. EPHB1 ENSGALG00000006609 346 0.838 - - - - - - 0.838 - - - EPH receptor B1, transcript variant X2
73. KCNK1 ENSGALG00000011005 1643 0.838 - - - - - - 0.838 - - - potassium two pore domain channel subfamily K member 1 [Source:HGNC Symbol;Acc:HGNC:6272]
74. COL12A1 ENSGALG00000015908 1300 0.838 - - - - - - 0.838 - - - collagen type XII alpha 1 chain [Source:NCBI gene;Acc:395875]
75. LITAF ENSGALG00000003217 7 0.836 - - - - - - - 0.836 - - lipopolysaccharide induced TNF factor [Source:NCBI gene;Acc:374125]
76. FAM91A1 ENSGALG00000035478 266 0.835 - - - - - - 0.835 - - - family with sequence similarity 91 member A1 [Source:HGNC Symbol;Acc:HGNC:26306]
77. PKP1 ENSGALG00000000299 155 0.834 - - - - - - 0.834 - - - plakophilin 1 [Source:HGNC Symbol;Acc:HGNC:9023]
78. MN1 ENSGALG00000026119 1808 0.833 - - - - - - 0.833 - - - MN1 proto-oncogene, transcriptional regulator [Source:HGNC Symbol;Acc:HGNC:7180]
79. TOR4A ENSGALG00000008623 1364 0.827 - - - - - - 0.827 - - - torsin family 4 member A [Source:HGNC Symbol;Acc:HGNC:25981]
80. Mar-06 Mar-06 1218 0.826 - - - - - - 0.826 - - -
81. CHGA ENSGALG00000010820 1028 0.825 - - - - - - 0.825 - - - chromogranin A [Source:HGNC Symbol;Acc:HGNC:1929]
82. ENSGALG00000020883 ENSGALG00000020883 299 0.824 - - - - - - 0.824 - - -
83. CREG1 ENSGALG00000040426 1188 0.819 - - - - - - 0.819 - - - cellular repressor of E1A stimulated genes 1 [Source:NCBI gene;Acc:768680]
84. SRSF1 ENSGALG00000005525 4376 0.819 - - - - - - 0.819 - - - serine and arginine rich splicing factor 1 [Source:NCBI gene;Acc:772264]
85. ENSGALG00000027667 ENSGALG00000027667 12 0.818 - - - - - - - - - 0.818
86. CASR ENSGALG00000038405 53 0.818 - - - - - - - - - 0.818 calcium sensing receptor [Source:HGNC Symbol;Acc:HGNC:1514]
87. ENSGALG00000005895 ENSGALG00000005895 889 0.817 - - - - - - 0.817 - - -
88. TNK2 ENSGALG00000027983 144 0.817 - - - - - - - - - 0.817 tyrosine kinase non receptor 2, transcript variant X7
89. FHIT ENSGALG00000007172 580 0.817 - - - - - - 0.817 - - - fragile histidine triad [Source:NCBI gene;Acc:416071]
90. ENSGALG00000027927 ENSGALG00000027927 654 0.815 - - - - - - 0.815 - - -
91. MEF2D ENSGALG00000037787 1080 0.815 - - - - - - 0.815 - - - myocyte enhancer factor 2D [Source:NCBI gene;Acc:431059]
92. GRM7 ENSGALG00000037841 290 0.812 - - - - - - 0.812 - - - glutamate metabotropic receptor 7 [Source:HGNC Symbol;Acc:HGNC:4599]
93. RTN4RL2 ENSGALG00000032903 809 0.811 - - - - - - 0.811 - - - reticulon 4 receptor like 2 [Source:HGNC Symbol;Acc:HGNC:23053]
94. ENSGALG00000015857 ENSGALG00000015857 238 0.81 - - - - - - - - - 0.810
95. SCUBE2 ENSGALG00000032161 63 0.807 - - - - - - 0.807 - - - signal peptide, CUB domain and EGF like domain containing 2 [Source:HGNC Symbol;Acc:HGNC:30425]
96. ISOC1 ENSGALG00000000161 46 0.802 - - - - - - - 0.802 - - isochorismatase domain containing 1 [Source:HGNC Symbol;Acc:HGNC:24254]
97. DEPDC7 ENSGALG00000011681 1181 0.802 - - - - - - 0.802 - - - DEP domain containing 7 [Source:NCBI gene;Acc:421593]
98. LUZP1 ENSGALG00000025858 947 0.802 - - - - - - 0.802 - - - leucine zipper protein 1 [Source:HGNC Symbol;Acc:HGNC:14985]
99. ENSGALG00000006865 ENSGALG00000006865 307 0.8 - - - - - - 0.800 - - -
100. ECHDC1 ENSGALG00000014828 958 0.8 - - - - - - 0.800 - - - ethylmalonyl-CoA decarboxylase 1 [Source:NCBI gene;Acc:769021]

There are 167 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA