Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for SCN1A

Gene Name Gene ID Reads Annotation
SCN1A ENSGALG00000010943 6 sodium voltage-gated channel alpha subunit 1 [Source:HGNC Symbol;Acc:HGNC:10585]











Genes with expression patterns similar to SCN1A

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. SCN1A ENSGALG00000010943 6 4 - - 1.000 - 1.000 - 1.000 - - 1.000 sodium voltage-gated channel alpha subunit 1 [Source:HGNC Symbol;Acc:HGNC:10585]
2. ANO3 ENSGALG00000013311 16 1.735 - - - - 1.000 - - - - 0.735 anoctamin 3 [Source:NCBI gene;Acc:422968]
3. CECR2 ENSGALG00000013034 12 1.634 - - 0.721 - - - - - - 0.913 CECR2, histone acetyl-lysine reader [Source:NCBI gene;Acc:418161]
4. CD320 ENSGALG00000021688 3 1 - - - - - - - - - 1.000 CD320 molecule [Source:NCBI gene;Acc:420066]
5. RASA4 ENSGALG00000001876 178 1 - - - - - - 1.000 - - - RAS p21 protein activator 4 [Source:NCBI gene;Acc:417513]
6. BTBD10 ENSGALG00000005369 56 1 - - - - 1.000 - - - - - BTB domain containing 10 [Source:NCBI gene;Acc:423029]
7. SNORD100 SNORD100 270 1 - - - - 1.000 - - - - -
8. AKAP14 26 1 - - - - 1.000 - - - - - A-kinase anchoring protein 14, transcript variant X1
9. SLC26A4 ENSGALG00000007998 2 1 - - - - - - 1.000 - - - solute carrier family 26 member 4 [Source:HGNC Symbol;Acc:HGNC:8818]
10. EMID1 4 1 - - - - 1.000 - - - - - EMI domain containing 1, transcript variant X5
11. HFM1 ENSGALG00000006091 5 1 - - - - 1.000 - - - - - HFM1, ATP dependent DNA helicase homolog [Source:HGNC Symbol;Acc:HGNC:20193]
12. SLC5A7 ENSGALG00000016804 93 1 - - - - - - 1.000 - - - solute carrier family 5 member 7 [Source:NCBI gene;Acc:414870]
13. CHAT ENSGALG00000002289 26 1 - - - - 1.000 - - - - - choline O-acetyltransferase [Source:NCBI gene;Acc:395314]
14. XDH ENSGALG00000008701 10 1 - - - - 1.000 - - - - - xanthine dehydrogenase [Source:NCBI gene;Acc:396025]
15. PCDH19 ENSGALG00000006822 13 1 - - - - 1.000 - - - - - protocadherin 19 [Source:NCBI gene;Acc:422263]
16. TRHDE ENSGALG00000010200 4 1 - - - - 1.000 - - - - - thyrotropin releasing hormone degrading enzyme [Source:HGNC Symbol;Acc:HGNC:30748]
17. UBXN6 ENSGALG00000001146 122 1 - - - - - - 1.000 - - - UBX domain protein 6 [Source:HGNC Symbol;Acc:HGNC:14928]
18. TYRP1 ENSGALG00000015205 4 1 - - - - - - 1.000 - - - tyrosinase related protein 1 [Source:NCBI gene;Acc:395913]
19. HECA ENSGALG00000013824 14 1 - - - - - - 1.000 - - - hdc homolog, cell cycle regulator [Source:HGNC Symbol;Acc:HGNC:21041]
20. HEPACAM2 ENSGALG00000009482 3 1 - - - - 1.000 - - - - - HEPACAM family member 2 [Source:HGNC Symbol;Acc:HGNC:27364]
21. GHSR ENSGALG00000027947 24 1 - - - - - - 1.000 - - - growth hormone secretagogue receptor [Source:NCBI gene;Acc:378911]
22. CMTR1 ENSGALG00000010149 12 1 - - - - - - - - - 1.000 cap methyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:21077]
23. TMEM72 ENSGALG00000026808 5 1 - - - - - - - - - 1.000 transmembrane protein 72 [Source:HGNC Symbol;Acc:HGNC:31658]
24. SIX4 ENSGALG00000017389 10 1 - - - - - - 1.000 - - - SIX homeobox 4 [Source:HGNC Symbol;Acc:HGNC:10890]
25. SYTL2L ENSGALG00000008326 5 1 - - - - 1.000 - - - - - synaptotagmin-like protein 2-like, transcript variant X4
26. PLD5 ENSGALG00000010737 5 1 - - - - 1.000 - - - - - phospholipase D family member 5 [Source:NCBI gene;Acc:421501]
27. DNAJC28 ENSGALG00000037414 6 1 - - - - - - 1.000 - - - DnaJ heat shock protein family (Hsp40) member C28 [Source:HGNC Symbol;Acc:HGNC:1297]
28. CFAP99 ENSGALG00000015685 32 1 - - - - - - 1.000 - - - cilia and flagella associated protein 99 [Source:HGNC Symbol;Acc:HGNC:51180]
29. CDHR4 2 1 - - - - 1.000 - - - - - cadherin related family member 4
30. FBXL4 ENSGALG00000015490 12 1 - - - - 1.000 - - - - - F-box and leucine rich repeat protein 4 [Source:HGNC Symbol;Acc:HGNC:13601]
31. SLC25A43 ENSGALG00000008682 1 1 - - - - 1.000 - - - - - solute carrier family 25 member 43 [Source:HGNC Symbol;Acc:HGNC:30557]
32. ENSGALG00000003051 ENSGALG00000003051 1 1 - - - - 1.000 - - - - -
33. GTF3C6 ENSGALG00000015044 112 1 - - - - - - 1.000 - - - general transcription factor IIIC subunit 6 [Source:NCBI gene;Acc:421754]
34. SHROOM3 35 1 - - - - - - 1.000 - - - shroom family member 3, transcript variant X1
35. ENSGALG00000028222 ENSGALG00000028222 44 1 - - - - - - 1.000 - - -
36. TSNAXIP1 ENSGALG00000001533 9 1 - - - - 1.000 - - - - - translin associated factor X interacting protein 1, transcript variant X2
37. WNK1 ENSGALG00000012992 67 1 - - - - - - 1.000 - - - WNK lysine deficient protein kinase 1 [Source:HGNC Symbol;Acc:HGNC:14540]
38. EPHB6 ENSGALG00000014749 30 1 - - - - 1.000 - - - - - EPH receptor B6 [Source:NCBI gene;Acc:418308]
39. WWTR1 ENSGALG00000010412 5 1 - - - - - - 1.000 - - - WW domain containing transcription regulator 1 [Source:HGNC Symbol;Acc:HGNC:24042]
40. FSTL1 ENSGALG00000014970 25 1 - - - - 1.000 - - - - - follistatin like 1 [Source:NCBI gene;Acc:395349]
41. SCN3B ENSGALG00000006490 48 1 - - - - - - 1.000 - - - sodium voltage-gated channel beta subunit 3 [Source:HGNC Symbol;Acc:HGNC:20665]
42. ARL15 ENSGALG00000014911 13 1 - - - - 1.000 - - - - - ADP ribosylation factor like GTPase 15 [Source:HGNC Symbol;Acc:HGNC:25945]
43. RASAL2 ENSGALG00000004323 55 1 - - - - - - 1.000 - - - RAS protein activator like 2 [Source:HGNC Symbol;Acc:HGNC:9874]
44. ASMT ENSGALG00000016685 3 1 - - - - - - 1.000 - - - acetylserotonin O-methyltransferase [Source:NCBI gene;Acc:396286]
45. ENSGALG00000027164 ENSGALG00000027164 8 1 - - - - - - 1.000 - - -
46. BRINP2 ENSGALG00000004448 26 1 - - - - 1.000 - - - - - BMP/retinoic acid inducible neural specific 2 [Source:HGNC Symbol;Acc:HGNC:13746]
47. C2CD3 ENSGALG00000017314 13 1 - - - - 1.000 - - - - - C2 calcium dependent domain containing 3 [Source:HGNC Symbol;Acc:HGNC:24564]
48. GPR22 ENSGALG00000008032 5 1 - - - - 1.000 - - - - - G protein-coupled receptor 22, transcript variant X1
49. AKAP11 ENSGALG00000022739 82 1 - - - - 1.000 - - - - - A-kinase anchoring protein 11 [Source:HGNC Symbol;Acc:HGNC:369]
50. C9orf3 C9orf3 47 1 - - - - - - 1.000 - - -
51. CDCA4L ENSGALG00000023023 1 1 - - - - 1.000 - - - - - cell division cycle associated 4-like, transcript variant X1
52. DAGLA ENSGALG00000036492 3 1 - - - - 1.000 - - - - - diacylglycerol lipase alpha [Source:HGNC Symbol;Acc:HGNC:1165]
53. POMT2 ENSGALG00000041962 1 1 - - - - 1.000 - - - - - protein O-mannosyltransferase 2, transcript variant X7
54. SEPT12 ENSGALG00000029027 611 1 - - - - - - 1.000 - - - septin 12 [Source:HGNC Symbol;Acc:HGNC:26348]
55. PAX5 ENSGALG00000016431 1 1 - - - - - - 1.000 - - - paired box 5 [Source:NCBI gene;Acc:387330]
56. SLC25A25 ENSGALG00000005095 4 1 - - - - 1.000 - - - - - solute carrier family 25 member 25 [Source:HGNC Symbol;Acc:HGNC:20663]
57. CNP1 ENSGALG00000028638 56 1 - - - - - - 1.000 - - - C-type natriuretic peptide 1 [Source:NCBI gene;Acc:100499455]
58. ADCY1 ENSGALG00000031170 4 1 - - - - 1.000 - - - - - adenylate cyclase 1 [Source:HGNC Symbol;Acc:HGNC:232]
59. EPB42 ENSGALG00000021230 20 1 - - - - - - 1.000 - - - Gallus gallus erythrocyte membrane protein band 4.2 (EPB42), mRNA. [Source:RefSeq mRNA;Acc:NM_001321559]
60. RXFP1 ENSGALG00000009429 10 1 - - - - 1.000 - - - - - relaxin family peptide receptor 1 [Source:HGNC Symbol;Acc:HGNC:19718]
61. LMLN ENSGALG00000012067 15 1 - - - - - - 1.000 - - - leishmanolysin like peptidase [Source:HGNC Symbol;Acc:HGNC:15991]
62. OLAH ENSGALG00000043833 3 1 - - - - - - 1.000 - - - oleoyl-ACP hydrolase [Source:HGNC Symbol;Acc:HGNC:25625]
63. ARSA ENSGALG00000035824 299 1 - - - - - - 1.000 - - - arylsulfatase A [Source:HGNC Symbol;Acc:HGNC:713]
64. CAPN13 ENSGALG00000020084 6 1 - - - - 1.000 - - - - - calpain 13 [Source:HGNC Symbol;Acc:HGNC:16663]
65. GRHL2 ENSGALG00000037687 3 1 - - - - 1.000 - - - - - grainyhead like transcription factor 2 [Source:HGNC Symbol;Acc:HGNC:2799]
66. TRAF2 ENSGALG00000042838 24 1 - - - - 1.000 - - - - - TNF receptor associated factor 2 [Source:HGNC Symbol;Acc:HGNC:12032]
67. CARF ENSGALG00000008474 6 1 - - - - - - 1.000 - - - calcium responsive transcription factor [Source:HGNC Symbol;Acc:HGNC:14435]
68. ZNF143 ENSGALG00000005787 345 1 - - - - - - 1.000 - - - zinc finger protein 143 [Source:HGNC Symbol;Acc:HGNC:12928]
69. CRK ENSGALG00000002656 15 1 - - - - 1.000 - - - - - CRK proto-oncogene, adaptor protein [Source:NCBI gene;Acc:107054794]
70. ADAP1 ENSGALG00000003819 13 1 - - - - 1.000 - - - - - ArfGAP with dual PH domains 1 [Source:HGNC Symbol;Acc:HGNC:16486]
71. HOXB1 ENSGALG00000013454 9 1 - - - - 1.000 - - - - - homeobox B1 [Source:NCBI gene;Acc:395900]
72. HDC ENSGALG00000023436 3 1 - - - - 1.000 - - - - - histidine decarboxylase [Source:NCBI gene;Acc:415454]
73. SEMA4G ENSGALG00000026957 11 1 - - - - - - 1.000 - - - semaphorin 4G [Source:HGNC Symbol;Acc:HGNC:10735]
74. ACSL6 ENSGALG00000006644 5 1 - - - - 1.000 - - - - - acyl-CoA synthetase long-chain family member 6, transcript variant X3
75. TESK2 ENSGALG00000010230 9 1 - - - - 1.000 - - - - - testis associated actin remodelling kinase 2 [Source:HGNC Symbol;Acc:HGNC:11732]
76. VENTX VENTX 50 1 - - - - - - 1.000 - - -
77. SERPINF2 ENSGALG00000002987 236 0.952 - - - - 0.952 - - - - - serpin family F member 2 [Source:HGNC Symbol;Acc:HGNC:9075]
78. OLFML2B ENSGALG00000002667 8 0.946 - - 0.946 - - - - - - - olfactomedin like 2B [Source:HGNC Symbol;Acc:HGNC:24558]
79. DCHS1 ENSGALG00000017334 12 0.935 - - - - - - - - - 0.935 dachsous cadherin-related 1, transcript variant X1
80. MOV10L1 ENSGALG00000033664 2 0.929 - - 0.929 - - - - - - - Mov10 like RISC complex RNA helicase 1 [Source:HGNC Symbol;Acc:HGNC:7201]
81. C1orf170 C1orf170 7 0.929 - - - - - - 0.929 - - -
82. ENSGALG00000026897 ENSGALG00000026897 6 0.924 - - 0.924 - - - - - - -
83. RSPO4 ENSGALG00000023640 1 0.923 - - 0.923 - - - - - - - R-spondin 4 [Source:HGNC Symbol;Acc:HGNC:16175]
84. CLOCK ENSGALG00000013793 9 0.923 - - 0.923 - - - - - - - clock circadian regulator [Source:NCBI gene;Acc:373991]
85. ENSGALG00000023271 ENSGALG00000023271 3 0.923 - - 0.923 - - - - - - -
86. ADAMTS5 ENSGALG00000015795 6 0.923 - - 0.923 - - - - - - - ADAM metallopeptidase with thrombospondin type 1 motif 5 [Source:HGNC Symbol;Acc:HGNC:221]
87. IL6 ENSGALG00000010915 8 0.923 - - 0.923 - - - - - - - interleukin 6 [Source:NCBI gene;Acc:395337]
88. ADCY5 ENSGALG00000031244 10 0.923 - - 0.923 - - - - - - - adenylate cyclase 5 [Source:NCBI gene;Acc:395340]
89. A4GNT ENSGALG00000006600 11 0.923 - - 0.923 - - - - - - - alpha-1,4-N-acetylglucosaminyltransferase [Source:HGNC Symbol;Acc:HGNC:17968]
90. ARHGAP15 ENSGALG00000012421 58 0.923 - - 0.923 - - - - - - - Rho GTPase activating protein 15 [Source:NCBI gene;Acc:424303]
91. MAT2A ENSGALG00000015366 17 0.923 - - 0.923 - - - - - - - methionine adenosyltransferase 2A, transcript variant X1
92. PLIN1 ENSGALG00000023395 2 0.923 - - 0.923 - - - - - - - perilipin 1 [Source:NCBI gene;Acc:415487]
93. INTERLEUKIN-2 INTERLEUKIN-2 1 0.923 - - 0.923 - - - - - - -
94. ABCG8 ENSGALG00000009958 1 0.923 - - 0.923 - - - - - - - ATP binding cassette subfamily G member 8 [Source:HGNC Symbol;Acc:HGNC:13887]
95. GABRA6 ENSGALG00000001695 3 0.923 - - 0.923 - - - - - - - gamma-aminobutyric acid type A receptor alpha6 subunit [Source:NCBI gene;Acc:395931]
96. AK7 ENSGALG00000011093 9 0.923 - - 0.923 - - - - - - - adenylate kinase 7 [Source:HGNC Symbol;Acc:HGNC:20091]
97. ENSGALG00000028016 ENSGALG00000028016 4 0.923 - - 0.923 - - - - - - -
98. RBP2 ENSGALG00000005327 1 0.923 - - 0.923 - - - - - - - retinol binding protein 2 [Source:NCBI gene;Acc:424822]
99. SNX19 ENSGALG00000001425 2 0.923 - - 0.923 - - - - - - - sorting nexin 19 [Source:HGNC Symbol;Acc:HGNC:21532]
100. CHAD ENSGALG00000019761 5 0.923 - - 0.923 - - - - - - - chondroadherin, transcript variant X2

There are 143 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA