Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for SCARNA23

Gene Name Gene ID Reads Annotation
SCARNA23 SCARNA23 2











Genes with expression patterns similar to SCARNA23

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. LOC100858814 ENSGALG00000028210 3 2 - - 1.000 - - 1.000 - - - - adenine phosphoribosyltransferase-like, transcript variant X1
2. SCARNA23 SCARNA23 2 2 - - 1.000 - - 1.000 - - - -
3. TMEM8C ENSGALG00000021520 30 1 - - - - - 1.000 - - - - Gallus gallus transmembrane protein 8C (TMEM8C), mRNA. [Source:RefSeq mRNA;Acc:NM_001318457]
4. ENSGALG00000014620 ENSGALG00000014620 7 1 - - 1.000 - - - - - - -
5. TNS4 ENSGALG00000028308 2 1 - - 1.000 - - - - - - - tensin 4 [Source:HGNC Symbol;Acc:HGNC:24352]
6. ENSGALG00000020349 ENSGALG00000020349 10 1 - - - - - 1.000 - - - -
7. GDPGP1 ENSGALG00000045045 2 1 - - 1.000 - - - - - - - GDP-D-glucose phosphorylase 1
8. TOX3 ENSGALG00000034649 54 1 - - - - - 1.000 - - - - TOX high mobility group box family member 3 [Source:NCBI gene;Acc:415724]
9. SLC26A11 ENSGALG00000007018 7 1 - - - - - 1.000 - - - - solute carrier family 26 member 11 [Source:HGNC Symbol;Acc:HGNC:14471]
10. TSSK3 4 1 - - - - - 1.000 - - - - testis specific serine kinase 3
11. ST7L ENSGALG00000001538 5 1 - - - - - 1.000 - - - - suppression of tumorigenicity 7 like [Source:NCBI gene;Acc:395331]
12. CCDC176 CCDC176 10 1 - - 1.000 - - - - - - -
13. TRH ENSGALG00000008490 16 1 - - - - - 1.000 - - - - thyrotropin releasing hormone [Source:NCBI gene;Acc:414344]
14. NOXO1 ENSGALG00000005572 14 1 - - - - - 1.000 - - - - NADPH oxidase organizer 1 [Source:HGNC Symbol;Acc:HGNC:19404]
15. STK35 ENSGALG00000036219 0 1 - - - - - 1.000 - - - - serine/threonine kinase 35 [Source:HGNC Symbol;Acc:HGNC:16254]
16. BACE1 ENSGALG00000007298 3 1 - - - - - 1.000 - - - - beta-secretase 1 [Source:HGNC Symbol;Acc:HGNC:933]
17. PPM1L ENSGALG00000009537 5 1 - - 1.000 - - - - - - - protein phosphatase, Mg2+/Mn2+ dependent 1L [Source:HGNC Symbol;Acc:HGNC:16381]
18. BANK1 ENSGALG00000012292 17 1 - - - - - 1.000 - - - - B cell scaffold protein with ankyrin repeats 1 [Source:HGNC Symbol;Acc:HGNC:18233]
19. ADAMTSL5 ENSGALG00000024298 2 1 - - 1.000 - - - - - - - ADAMTS like 5 [Source:HGNC Symbol;Acc:HGNC:27912]
20. TEKT1 ENSGALG00000006064 18 1 - - 1.000 - - - - - - - tektin 1 [Source:HGNC Symbol;Acc:HGNC:15534]
21. CD1.2 CD1.2 10 1 - - 1.000 - - - - - - -
22. DIET1 DIET1 1 1 - - - - - 1.000 - - - -
23. OSTN ENSGALG00000007226 33 1 - - - - - 1.000 - - - - osteocrin [Source:NCBI gene;Acc:424907]
24. COTL1 ENSGALG00000017644 81 1 - - - - - 1.000 - - - - coactosin like F-actin binding protein 1 [Source:NCBI gene;Acc:768420]
25. SLCO4C1 ENSGALG00000026768 30 1 - - - - - 1.000 - - - - solute carrier organic anion transporter family member 4C1, transcript variant X4
26. TTC34 ENSGALG00000001081 8 1 - - - - - 1.000 - - - - tetratricopeptide repeat domain 34 [Source:HGNC Symbol;Acc:HGNC:34297]
27. ENSGALG00000015321 ENSGALG00000015321 18 1 - - - - - 1.000 - - - -
28. HMX2 ENSGALG00000030875 10 1 - - - - - 1.000 - - - - H6 family homeobox 2 [Source:HGNC Symbol;Acc:HGNC:5018]
29. NPBWR1 ENSGALG00000015261 6 1 - - 1.000 - - - - - - - Gallus gallus neuropeptides B/W receptor 1 (NPBWR1), mRNA. [Source:RefSeq mRNA;Acc:NM_001327793]
30. ATP7B ENSGALG00000017021 7 1 - - - - - 1.000 - - - - ATPase copper transporting beta [Source:HGNC Symbol;Acc:HGNC:870]
31. PPFIA2 ENSGALG00000010958 27 1 - - - - - 1.000 - - - - PTPRF interacting protein alpha 2 [Source:HGNC Symbol;Acc:HGNC:9246]
32. CYGB ENSGALG00000001892 3 1 - - 1.000 - - - - - - - cytoglobin [Source:NCBI gene;Acc:427802]
33. KCNC1 ENSGALG00000006220 15 1 - - - - - 1.000 - - - - potassium voltage-gated channel subfamily C member 1 [Source:HGNC Symbol;Acc:HGNC:6233]
34. gga-let-7i ENSGALG00000018237 2 1 - - - - - 1.000 - - - - gga-let-7i [Source:miRBase;Acc:MI0001168]
35. DMP1 ENSGALG00000010927 5 1 - - - - - 1.000 - - - - matrix extracellular phosphoglycoprotein [Source:NCBI gene;Acc:395256]
36. CHSY1 ENSGALG00000026468 4 1 - - - - - 1.000 - - - - chondroitin sulfate synthase 1 [Source:HGNC Symbol;Acc:HGNC:17198]
37. C6orf163 ENSGALG00000028653 39 1 - - 1.000 - - - - - - - chromosome 6 open reading frame 163 [Source:HGNC Symbol;Acc:HGNC:21403]
38. CCDC64 CCDC64 2 1 - - - - - 1.000 - - - -
39. KLHL23 ENSGALG00000020737 13 1 - - - - - 1.000 - - - - kelch like family member 23 [Source:HGNC Symbol;Acc:HGNC:27506]
40. DDTNFR23 ENSGALG00000006407 4 1 - - - - - 1.000 - - - - death domain-containing tumor necrosis factor receptor superfamily member 23 [Source:NCBI gene;Acc:378902]
41. CFUC-TIX CFUC-TIX 1 1 - - - - - 1.000 - - - -
42. H2AFX ENSGALG00000045705 7 1 - - 1.000 - - - - - - - H2A histone family member X
43. KRT20 ENSGALG00000019716 11 1 - - 1.000 - - - - - - - keratin 20 [Source:NCBI gene;Acc:420045]
44. snosnR60 snosnR60 3 1 - - 1.000 - - - - - - -
45. ST6GALNAC3 ENSGALG00000009027 17 1 - - - - - 1.000 - - - - ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 [Source:HGNC Symbol;Acc:HGNC:19343]
46. FAM212B ENSGALG00000001480 2 1 - - 1.000 - - - - - - - family with sequence similarity 212, member B
47. FETUB ENSGALG00000008608 38 1 - - 1.000 - - - - - - - fetuin B [Source:NCBI gene;Acc:395404]
48. PGPEP1L ENSGALG00000007022 1 1 - - 1.000 - - - - - - - pyroglutamyl-peptidase I like [Source:HGNC Symbol;Acc:HGNC:27080]
49. SRRM3 ENSGALG00000001932 12 1 - - - - - 1.000 - - - - serine/arginine repetitive matrix 3 [Source:HGNC Symbol;Acc:HGNC:26729]
50. ENSGALG00000007498 ENSGALG00000007498 2 1 - - 1.000 - - - - - - -
51. P2RX3 ENSGALG00000040479 5 1 - - - - - 1.000 - - - - Gallus gallus purinergic receptor P2X 3 (P2RX3), mRNA. [Source:RefSeq mRNA;Acc:NM_001329216]
52. PAPPA ENSGALG00000007079 6 1 - - - - - 1.000 - - - - pappalysin 1 [Source:HGNC Symbol;Acc:HGNC:8602]
53. GPR12 ENSGALG00000017102 4 1 - - - - - 1.000 - - - - G protein-coupled receptor 12 [Source:HGNC Symbol;Acc:HGNC:4466]
54. ENSGALG00000026368 ENSGALG00000026368 1 1 - - - - - 1.000 - - - -
55. XRRA1 ENSGALG00000017310 2 1 - - 1.000 - - - - - - - X-ray radiation resistance associated 1 [Source:HGNC Symbol;Acc:HGNC:18868]
56. ENSGALG00000022715 ENSGALG00000022715 13 1 - - - - - 1.000 - - - -
57. ENSGALG00000016682 ENSGALG00000016682 1 1 - - 1.000 - - - - - - -
58. ACRBP 0 1 - - - - - 1.000 - - - - acrosin binding protein
59. FGL1 ENSGALG00000013606 42 1 - - - - - 1.000 - - - - fibrinogen like 1 [Source:NCBI gene;Acc:422728]
60. TP63 ENSGALG00000007324 6 1 - - - - - 1.000 - - - - tumor protein p63 [Source:NCBI gene;Acc:374269]
61. ENSGALG00000028531 ENSGALG00000028531 2 1 - - - - - 1.000 - - - -
62. TMEM45BL ENSGALG00000024296 5 1 - - 1.000 - - - - - - - transmembrane protein 45B-like
63. WDR63 ENSGALG00000008696 15 1 - - - - - 1.000 - - - - WD repeat domain 63 [Source:HGNC Symbol;Acc:HGNC:30711]
64. MARCO ENSGALG00000012119 5 1 - - - - - 1.000 - - - - macrophage receptor with collagenous structure [Source:NCBI gene;Acc:395488]
65. GVINP1 ENSGALG00000016556 4 1 - - - - - 1.000 - - - - GTPase, very large interferon inducible pseudogene 1, transcript variant X1
66. SERPINB5 ENSGALG00000012873 24 1 - - - - - 1.000 - - - - serpin family B member 5 [Source:HGNC Symbol;Acc:HGNC:8949]
67. uc_3 uc_3 1 1 - - 1.000 - - - - - - -
68. CTSD ENSGALG00000006613 4 1 - - - - - 1.000 - - - - cathepsin D [Source:NCBI gene;Acc:396090]
69. MAPK11 ENSGALG00000040023 15 1 - - - - - 1.000 - - - - mitogen-activated protein kinase 11 [Source:NCBI gene;Acc:417739]
70. FAM149B1 ENSGALG00000002693 16 1 - - - - - 1.000 - - - - family with sequence similarity 149 member B1 [Source:HGNC Symbol;Acc:HGNC:29162]
71. FHDC1 ENSGALG00000041054 34 0.998 - - - - - 0.998 - - - - FH2 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:29363]
72. TSPAN18 ENSGALG00000036901 14 0.987 - - - - - 0.987 - - - - tetraspanin 18 [Source:NCBI gene;Acc:395586]
73. ANKRD31 46 0.985 - - - - - 0.985 - - - - ankyrin repeat domain 31, transcript variant X2
74. MLANA ENSGALG00000019756 8 0.948 - - 0.948 - - - - - - - melan-A [Source:HGNC Symbol;Acc:HGNC:7124]
75. ENSGALG00000028298 ENSGALG00000028298 34 0.944 - - - - - 0.944 - - - -
76. MANSC4 32 0.944 - - - - - 0.944 - - - - MANSC domain containing 4, transcript variant X1
77. FAR-2 FAR-2 24 0.943 - - - - - 0.943 - - - -
78. TNNC2 ENSGALG00000006835 2963 0.935 - - - - - 0.935 - - - - troponin C2, fast skeletal type [Source:NCBI gene;Acc:396434]
79. CD109 ENSGALG00000015910 11 0.928 - - - - - 0.928 - - - - CD109 molecule [Source:HGNC Symbol;Acc:HGNC:21685]
80. TMEM132E ENSGALG00000002312 16 0.91 - - - - - 0.910 - - - - transmembrane protein 132E [Source:HGNC Symbol;Acc:HGNC:26991]
81. CRYAA ENSGALG00000016199 12 0.898 - - 0.898 - - - - - - - crystallin alpha A [Source:NCBI gene;Acc:418546]
82. WNT7B ENSGALG00000036255 3343 0.897 - - - - - 0.897 - - - - Wnt family member 7B [Source:NCBI gene;Acc:427937]
83. CBX7 ENSGALG00000041236 14 0.888 - - - - - 0.888 - - - - chromobox 7 [Source:HGNC Symbol;Acc:HGNC:1557]
84. ENSGALG00000019077 ENSGALG00000019077 49 0.878 - - - - - 0.878 - - - -
85. DPH1 ENSGALG00000003082 5 0.871 - - 0.871 - - - - - - - diphthamide biosynthesis 1 [Source:NCBI gene;Acc:417564]
86. SH2D4B ENSGALG00000002370 10 0.868 - - - - - 0.868 - - - - SH2 domain containing 4B [Source:HGNC Symbol;Acc:HGNC:31440]
87. CLMN ENSGALG00000030719 60 0.852 - - - - - 0.852 - - - - calmin [Source:HGNC Symbol;Acc:HGNC:19972]
88. ATHL1 ATHL1 16 0.843 - - - - - 0.843 - - - -
89. SEMA4D ENSGALG00000010697 10 0.843 - - 0.843 - - - - - - - semaphorin 4D [Source:NCBI gene;Acc:396331]
90. GRIN2A ENSGALG00000007278 17 0.838 - - 0.838 - - - - - - - glutamate ionotropic receptor NMDA type subunit 2A [Source:HGNC Symbol;Acc:HGNC:4585]
91. ANKRD2 ENSGALG00000007539 13 0.838 - - 0.838 - - - - - - - ankyrin repeat domain 2 [Source:HGNC Symbol;Acc:HGNC:495]
92. SYCP1 ENSGALG00000002511 13 0.837 - - - - - 0.837 - - - - synaptonemal complex protein 1 [Source:HGNC Symbol;Acc:HGNC:11487]
93. SNORA28 SNORA28 12 0.837 - - - - - 0.837 - - - -
94. SUB1L1 ENSGALG00000027147 73 0.837 - - - - - 0.837 - - - - SUB1 homolog (S. cerevisiae)-like 1
95. MEGF6L ENSGALG00000009458 14 0.836 - - - - - 0.836 - - - - multiple EGF-like-domains 6-like, transcript variant X21
96. ENSGALG00000005511 ENSGALG00000005511 7 0.831 - - 0.831 - - - - - - -
97. NUMBL ENSGALG00000016508 12 0.831 - - 0.831 - - - - - - - numb homolog (Drosophila)-like, transcript variant X2
98. FGD4 ENSGALG00000012932 50 0.831 - - 0.831 - - - - - - - FYVE, RhoGEF and PH domain containing 4 [Source:HGNC Symbol;Acc:HGNC:19125]
99. SNORD16 SNORD16 2 0.831 - - 0.831 - - - - - - -
100. CDH8 ENSGALG00000005319 2 0.831 - - 0.831 - - - - - - - cadherin 8 [Source:NCBI gene;Acc:427553]

There are 33 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA