Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for SCARA3

Gene Name Gene ID Reads Annotation
SCARA3 ENSGALG00000026651 2559 scavenger receptor class A member 3 [Source:HGNC Symbol;Acc:HGNC:19000]











Genes with expression patterns similar to SCARA3

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. SCARA3 ENSGALG00000026651 2559 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 scavenger receptor class A member 3 [Source:HGNC Symbol;Acc:HGNC:19000]
2. C9H2ORF82 ENSGALG00000040264 4201 7.089 - 0.856 0.935 0.839 0.886 0.897 0.871 0.894 0.911 - chromosome 9 open reading frame, human C2orf82 [Source:NCBI gene;Acc:768774]
3. COL8A1 ENSGALG00000015253 2505 6.772 - 0.717 0.954 0.849 0.807 0.931 0.864 0.823 0.827 - collagen type VIII alpha 1 chain [Source:NCBI gene;Acc:418378]
4. COL9A2 ENSGALG00000027526 4685 6.641 - 0.844 0.923 0.755 0.776 0.904 0.760 0.916 0.763 - collagen type IX alpha 2 chain [Source:NCBI gene;Acc:396524]
5. COL9A3 ENSGALG00000005628 2842 6.637 - 0.824 0.929 0.807 0.850 0.865 0.816 0.792 0.754 - collagen type IX alpha 3 chain [Source:NCBI gene;Acc:396242]
6. RAB38 ENSGALG00000028018 1046 5.105 - - 0.879 0.851 0.783 0.904 0.810 0.878 - - RAB38, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:9776]
7. TAC1 ENSGALG00000009737 2211 5.062 - 0.742 0.906 0.853 - 0.915 0.713 0.933 - - tachykinin precursor 1 [Source:HGNC Symbol;Acc:HGNC:11517]
8. T ENSGALG00000011489 2619 5.032 - - 0.901 0.842 0.799 0.929 0.803 - 0.758 - T brachyury transcription factor [Source:NCBI gene;Acc:395782]
9. OSF-2 OSF-2 10433 5.032 - - 0.829 0.702 - 0.881 0.832 0.864 0.924 -
10. EMILIN3 ENSGALG00000030012 6200 4.968 - - 0.858 0.803 0.804 0.940 0.839 - 0.724 - elastin microfibril interfacer 3 [Source:HGNC Symbol;Acc:HGNC:16123]
11. SPON2 ENSGALG00000038433 1240 4.896 - 0.778 - 0.791 - 0.926 0.776 0.720 0.905 - spondin 2 [Source:HGNC Symbol;Acc:HGNC:11253]
12. SST ENSGALG00000007361 1383 4.865 - - 0.924 - 0.795 0.801 0.738 0.824 0.783 - somatostatin [Source:NCBI gene;Acc:396279]
13. WWP2 ENSGALG00000000699 5040 4.774 - 0.792 0.860 - - 0.755 0.834 0.714 0.819 - WW domain containing E3 ubiquitin protein ligase 2 [Source:NCBI gene;Acc:415868]
14. COL9A1 ENSGALG00000015970 3788 4.302 - - 0.926 0.780 0.862 0.886 0.848 - - - collagen type IX alpha 1 chain [Source:NCBI gene;Acc:771873]
15. TIMP3 ENSGALG00000028627 8706 4.299 - - 0.883 0.812 - 0.923 - 0.839 0.842 - TIMP metallopeptidase inhibitor 3 [Source:NCBI gene;Acc:396483]
16. LECT1 LECT1 12694 3.99 - - 0.817 0.738 0.758 - 0.823 0.854 - -
17. ACAN ENSGALG00000006725 184 3.364 - - 0.793 - - 0.893 - 0.818 0.860 - aggrecan [Source:NCBI gene;Acc:395798]
18. ZNF385B ENSGALG00000009012 290 3.332 - - 0.849 0.722 - 0.919 - 0.842 - - zinc finger protein 385B [Source:HGNC Symbol;Acc:HGNC:26332]
19. OCA2 ENSGALG00000016740 421 3.199 - - - 0.710 - 0.919 - 0.727 0.843 - OCA2 melanosomal transmembrane protein [Source:HGNC Symbol;Acc:HGNC:8101]
20. SAMD3 ENSGALG00000032409 459 2.574 - - - 0.833 - 0.917 - 0.824 - - sterile alpha motif domain containing 3 [Source:HGNC Symbol;Acc:HGNC:21574]
21. PCDH17 ENSGALG00000016941 1006 2.512 - - - - - 0.874 0.815 0.823 - - protocadherin 17 [Source:HGNC Symbol;Acc:HGNC:14267]
22. NPY7R ENSGALG00000021303 215 2.475 - - - 0.809 0.799 0.867 - - - - neuropeptide Y7 receptor [Source:NCBI gene;Acc:416280]
23. B3GNT7 ENSGALG00000007701 929 2.432 - 0.709 - - - 0.889 - - 0.834 - UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7 [Source:HGNC Symbol;Acc:HGNC:18811]
24. LRRTM1 ENSGALG00000015967 85 2.427 - - 0.717 - - 0.934 0.776 - - - leucine rich repeat transmembrane neuronal 1 [Source:HGNC Symbol;Acc:HGNC:19408]
25. CYP1B1 ENSGALG00000025822 3143 2.407 - 0.775 0.806 - - - - - 0.826 - cytochrome P450 family 1 subfamily B member 1 [Source:HGNC Symbol;Acc:HGNC:2597]
26. SLC24A4 ENSGALG00000010793 238 2.397 - - - - - - 0.706 0.845 0.846 - solute carrier family 24 member 4 [Source:HGNC Symbol;Acc:HGNC:10978]
27. SHH ENSGALG00000006379 1943 2.374 - - 0.855 - - - 0.720 - 0.799 - sonic hedgehog [Source:NCBI gene;Acc:395615]
28. SLC15A5 ENSGALG00000013097 213 2.368 - - 0.767 - 0.728 0.873 - - - - solute carrier family 15 member 5 [Source:HGNC Symbol;Acc:HGNC:33455]
29. KCNG1 ENSGALG00000007980 26 1.686 - - - - - 0.932 - 0.754 - - potassium voltage-gated channel modifier subfamily G member 1 [Source:HGNC Symbol;Acc:HGNC:6248]
30. SCARA5 ENSGALG00000016580 712 1.678 - - - - - 0.918 0.760 - - - scavenger receptor class A member 5 [Source:HGNC Symbol;Acc:HGNC:28701]
31. WIF1 ENSGALG00000039209 863 1.666 - - - - - 0.876 - 0.790 - - WNT inhibitory factor 1 [Source:NCBI gene;Acc:417831]
32. CCK ENSGALG00000029788 213 1.638 - - - - - 0.916 - - 0.722 - cholecystokinin [Source:NCBI gene;Acc:414884]
33. PAX1 ENSGALG00000039040 3339 1.63 - - 0.836 - 0.794 - - - - - paired box 1 [Source:HGNC Symbol;Acc:HGNC:8615]
34. TXNRD1 ENSGALG00000035345 4784 1.627 - - 0.771 0.856 - - - - - - Gallus gallus thioredoxin reductase 1 (TXNRD1), transcript variant 2, mRNA. [Source:RefSeq mRNA;Acc:NM_001352023]
35. FNDC1 ENSGALG00000011663 1040 1.614 - - - - - - - 0.811 - 0.803 fibronectin type III domain containing 1 [Source:HGNC Symbol;Acc:HGNC:21184]
36. ZNF536 ENSGALG00000035602 1127 1.611 - - - - - - 0.823 - 0.788 - zinc finger protein 536 [Source:HGNC Symbol;Acc:HGNC:29025]
37. IYD ENSGALG00000012392 315 1.592 - - - - - 0.734 - - 0.858 - iodotyrosine deiodinase [Source:HGNC Symbol;Acc:HGNC:21071]
38. SCIN ENSGALG00000010770 883 1.581 - - 0.848 - - 0.733 - - - - scinderin [Source:NCBI gene;Acc:420588]
39. POMC ENSGALG00000016600 99 1.573 - - - - 0.755 - - 0.818 - - proopiomelanocortin [Source:NCBI gene;Acc:422011]
40. IL13RA2 ENSGALG00000020316 22 1.57 - - - - - 0.773 - 0.797 - - interleukin 13 receptor subunit alpha 2 [Source:NCBI gene;Acc:422219]
41. ENSGALG00000010113 ENSGALG00000010113 508 1.543 - - 0.749 - - - 0.794 - - -
42. SPON1 ENSGALG00000038775 16503 1.504 - - 0.756 - - - - - 0.748 - spondin 1 [Source:NCBI gene;Acc:395657]
43. SMOC1 ENSGALG00000009415 2403 1.497 - - 0.755 - - - - - 0.742 - SPARC related modular calcium binding 1 [Source:HGNC Symbol;Acc:HGNC:20318]
44. C1QTNF3 ENSGALG00000027887 8646 1.476 - - 0.718 - 0.758 - - - - - C1q and tumor necrosis factor related protein 3, transcript variant X1
45. COL11A1 ENSGALG00000005180 244 1.457 - - - 0.722 - - - - 0.735 - collagen type XI alpha 1 chain [Source:HGNC Symbol;Acc:HGNC:2186]
46. TSPAN7 ENSGALG00000016251 6674 1.441 - 0.715 - - - - - 0.726 - - tetraspanin 7, transcript variant X2
47. RRAD ENSGALG00000005140 183 0.933 - - - - - 0.933 - - - - RRAD, Ras related glycolysis inhibitor and calcium channel regulator [Source:NCBI gene;Acc:415790]
48. APOD ENSGALG00000006995 2 0.932 - - - - - 0.932 - - - - apolipoprotein D [Source:NCBI gene;Acc:424893]
49. HOXA10 ENSGALG00000026631 1 0.932 - - - - - 0.932 - - - - homeobox A10 [Source:NCBI gene;Acc:776143]
50. ENSGALG00000008822 ENSGALG00000008822 221 0.92 - - - - - 0.920 - - - -
51. MYL1 ENSGALG00000002907 1300 0.914 - - - - - 0.914 - - - - myosin, light chain 1, alkali; skeletal, fast [Source:NCBI gene;Acc:396470]
52. LEFTY2 ENSGALG00000009256 1 0.905 - - - - - 0.905 - - - - left-right determination factor 2 [Source:NCBI gene;Acc:395529]
53. PRDM16 ENSGALG00000036728 934 0.905 - - - - - - - 0.905 - - PR/SET domain 16 [Source:HGNC Symbol;Acc:HGNC:14000]
54. PTH3R PTH3R 214 0.905 - - - - - 0.905 - - - -
55. NCBP2 ENSGALG00000006843 938 0.897 - - - - - - - 0.897 - - nuclear cap binding protein subunit 2, 20kDa [Source:NCBI gene;Acc:424889]
56. CCL17 ENSGALG00000024466 10 0.893 - - - - - 0.893 - - - - C-C motif chemokine ligand 17 [Source:NCBI gene;Acc:415652]
57. LOC428824 ENSGALG00000004393 358 0.878 - - - - - 0.878 - - - - SITS-binding protein-like, transcript variant X1
58. CHRDL1 ENSGALG00000008072 711 0.873 - - - - - 0.873 - - - - chordin like 1 [Source:NCBI gene;Acc:373985]
59. GEMIN8 ENSGALG00000016574 18 0.867 - - - - - - - 0.867 - - gem nuclear organelle associated protein 8 [Source:HGNC Symbol;Acc:HGNC:26044]
60. PIGM ENSGALG00000010768 41 0.856 - - - - - - - 0.856 - - phosphatidylinositol glycan anchor biosynthesis class M [Source:NCBI gene;Acc:428583]
61. RASGRF2 ENSGALG00000015598 30 0.856 - - - - - - - 0.856 - - Ras protein specific guanine nucleotide releasing factor 2 [Source:HGNC Symbol;Acc:HGNC:9876]
62. MYOG ENSGALG00000000172 460 0.85 - - - - - - - - 0.850 - myogenin [Source:NCBI gene;Acc:374004]
63. SOX9 ENSGALG00000004386 14802 0.833 - - 0.833 - - - - - - - SRY (sex determining region Y)-box 9 [Source:NCBI gene;Acc:374148]
64. ATP6V1G3 ENSGALG00000002207 151 0.828 - - - - - - - 0.828 - - ATPase H+ transporting V1 subunit G3 [Source:HGNC Symbol;Acc:HGNC:18265]
65. RGS18 ENSGALG00000021143 120 0.817 - - - - - 0.817 - - - - regulator of G-protein signaling 18 [Source:NCBI gene;Acc:424361]
66. VPAC2 VPAC2 45 0.813 - - - - - 0.813 - - - -
67. RYR2 ENSGALG00000010812 95 0.812 - - 0.812 - - - - - - - ryanodine receptor 2 [Source:HGNC Symbol;Acc:HGNC:10484]
68. TF ENSGALG00000006453 14007 0.808 - - 0.808 - - - - - - - transferrin (ovotransferrin) [Source:NCBI gene;Acc:396241]
69. CKMT2 ENSGALG00000015602 46 0.807 - - - - - - - 0.807 - - creatine kinase, mitochondrial 2 [Source:NCBI gene;Acc:396508]
70. SAMD11 ENSGALG00000034453 43 0.806 - - - - - - - 0.806 - - sterile alpha motif domain containing 11 [Source:NCBI gene;Acc:419434]
71. GPR114 GPR114 46 0.806 - - - - - - - 0.806 - -
72. GRIK4 ENSGALG00000006638 22 0.806 - - - - - - - 0.806 - - glutamate ionotropic receptor kainate type subunit 4 [Source:HGNC Symbol;Acc:HGNC:4582]
73. ENSGALG00000001137 ENSGALG00000001137 0 0.806 - - - - - - - 0.806 - -
74. IGHMBP2 ENSGALG00000004328 118 0.806 - - - - - - - 0.806 - - immunoglobulin mu DNA binding protein 2 [Source:NCBI gene;Acc:422999]
75. SLC22A13 ENSGALG00000005934 8 0.806 - - - - - - - 0.806 - - solute carrier family 22 member 13
76. TIGD3 TIGD3 36 0.806 - - - - - - - 0.806 - -
77. RAB44 ENSGALG00000000544 6 0.806 - - - - - - - 0.806 - - RAB44, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:21068]
78. GPM6A ENSGALG00000043480 2133 0.806 - - - - - - - 0.806 - - glycoprotein M6A [Source:NCBI gene;Acc:422569]
79. TRIM27.1 ENSGALG00000030397 19 0.806 - - - - - - - 0.806 - - tripartite motif containing 27.1 [Source:NCBI gene;Acc:417042]
80. PKDCCB ENSGALG00000011166 74 0.806 - - - - - - - 0.806 - - protein kinase domain containing, cytoplasmic b
81. CDK19 ENSGALG00000015051 26 0.806 - - - - - - - 0.806 - - cyclin dependent kinase 19 [Source:HGNC Symbol;Acc:HGNC:19338]
82. KIAA1217 ENSGALG00000007766 144 0.804 - - - - - 0.804 - - - - KIAA1217 [Source:HGNC Symbol;Acc:HGNC:25428]
83. SPNS3 ENSGALG00000001410 173 0.8 - - - - - - 0.800 - - - sphingolipid transporter 3 (putative) [Source:HGNC Symbol;Acc:HGNC:28433]
84. EPB41L3 ENSGALG00000038678 5863 0.799 - - 0.799 - - - - - - - erythrocyte membrane protein band 4.1 like 3 [Source:HGNC Symbol;Acc:HGNC:3380]
85. LMX1A ENSGALG00000003424 335 0.799 - - - - - 0.799 - - - - LIM homeobox transcription factor 1, alpha [Source:NCBI gene;Acc:777133]
86. DCLRE1B ENSGALG00000028626 48 0.798 - - - - - - - 0.798 - - DNA cross-link repair 1B [Source:NCBI gene;Acc:428269]
87. DNAJB5 ENSGALG00000001918 81 0.797 - - - - - - - 0.797 - - DnaJ heat shock protein family (Hsp40) member B5 [Source:HGNC Symbol;Acc:HGNC:14887]
88. SNORA19 SNORA19 70 0.797 - - - - - - - 0.797 - -
89. SH3RF1 ENSGALG00000009692 46 0.797 - - - - - - - 0.797 - - SH3 domain containing ring finger 1 [Source:HGNC Symbol;Acc:HGNC:17650]
90. ELOVL3 ENSGALG00000025772 212 0.797 - - - - - - - 0.797 - - Gallus gallus ELOVL fatty acid elongase 3 (ELOVL3), mRNA. [Source:RefSeq mRNA;Acc:NM_001318410]
91. SLC6A1 ENSGALG00000004921 118 0.797 - - - - - - - 0.797 - - solute carrier family 6 member 1 [Source:HGNC Symbol;Acc:HGNC:11042]
92. GFRA2 ENSGALG00000032856 1314 0.796 - - - - - - - 0.796 - - GDNF family receptor alpha 2 [Source:NCBI gene;Acc:395993]
93. ZNF385D ENSGALG00000011283 2578 0.795 - - - - - 0.795 - - - - zinc finger protein 385D [Source:HGNC Symbol;Acc:HGNC:26191]
94. CDH4 ENSGALG00000005102 3446 0.793 - - - - - - - - 0.793 - cadherin 4 [Source:NCBI gene;Acc:419222]
95. FBLN2 619 0.788 - - - - - 0.788 - - - - fibulin 2, transcript variant X7
96. TBX18 ENSGALG00000032789 1768 0.785 - - - - - 0.785 - - - - T-box 18 [Source:NCBI gene;Acc:395104]
97. OTOG ENSGALG00000006208 17 0.782 - - - - - - - 0.782 - - otogelin [Source:HGNC Symbol;Acc:HGNC:8516]
98. FAM102A ENSGALG00000005074 11 0.778 - - - - - - - 0.778 - - family with sequence similarity 102 member A [Source:NCBI gene;Acc:417228]
99. CNKSR3 ENSGALG00000027159 41 0.778 - - - - - - - 0.778 - - CNKSR family member 3, transcript variant X2
100. GDPD5 ENSGALG00000034967 1983 0.777 - - - - - - 0.777 - - - glycerophosphodiester phosphodiesterase domain containing 5 [Source:NCBI gene;Acc:419070]

There are 79 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA