Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for SAMD3

Gene Name Gene ID Reads Annotation
SAMD3 ENSGALG00000032409 459 sterile alpha motif domain containing 3 [Source:HGNC Symbol;Acc:HGNC:21574]











Genes with expression patterns similar to SAMD3

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. SAMD3 ENSGALG00000032409 459 9 - 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 sterile alpha motif domain containing 3 [Source:HGNC Symbol;Acc:HGNC:21574]
2. RAB38 ENSGALG00000028018 1046 5.359 - - - 0.994 0.812 0.963 0.781 0.973 - 0.836 RAB38, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:9776]
3. COL8A1 ENSGALG00000015253 2505 5.215 - - - 0.948 0.803 0.981 0.841 0.889 - 0.753 collagen type VIII alpha 1 chain [Source:NCBI gene;Acc:418378]
4. T ENSGALG00000011489 2619 4.39 - - - 0.984 0.821 0.956 0.831 - - 0.798 T brachyury transcription factor [Source:NCBI gene;Acc:395782]
5. OCA2 ENSGALG00000016740 421 4.388 - - - 0.881 0.708 0.968 0.849 0.982 - - OCA2 melanosomal transmembrane protein [Source:HGNC Symbol;Acc:HGNC:8101]
6. TIMP3 ENSGALG00000028627 8706 4.26 - - - 0.896 0.707 0.897 0.803 0.957 - - TIMP metallopeptidase inhibitor 3 [Source:NCBI gene;Acc:396483]
7. C9H2ORF82 ENSGALG00000040264 4201 4.229 - - - 0.930 0.763 0.906 0.709 0.921 - - chromosome 9 open reading frame, human C2orf82 [Source:NCBI gene;Acc:768774]
8. COL9A3 ENSGALG00000005628 2842 4.185 - - - 0.817 0.721 0.848 0.835 0.964 - - collagen type IX alpha 3 chain [Source:NCBI gene;Acc:396242]
9. SST ENSGALG00000007361 1383 4.077 - - - 0.785 0.720 0.898 - 0.907 - 0.767 somatostatin [Source:NCBI gene;Acc:396279]
10. OSF-2 OSF-2 10433 4.025 - - - 0.783 - 0.768 0.718 0.891 - 0.865
11. COL9A2 ENSGALG00000027526 4685 3.517 - - - 0.827 0.800 0.954 - 0.936 - - collagen type IX alpha 2 chain [Source:NCBI gene;Acc:396524]
12. COL9A1 ENSGALG00000015970 3788 3.475 - - - 0.916 0.746 0.964 0.849 - - - collagen type IX alpha 1 chain [Source:NCBI gene;Acc:771873]
13. ZNF385B ENSGALG00000009012 290 3.412 - - - 0.824 0.892 0.962 - 0.734 - - zinc finger protein 385B [Source:HGNC Symbol;Acc:HGNC:26332]
14. EMILIN3 ENSGALG00000030012 6200 3.304 - - - 0.832 0.839 0.927 0.706 - - - elastin microfibril interfacer 3 [Source:HGNC Symbol;Acc:HGNC:16123]
15. SPON2 ENSGALG00000038433 1240 2.766 - - - 0.830 - 0.979 - 0.957 - - spondin 2 [Source:HGNC Symbol;Acc:HGNC:11253]
16. TAC1 ENSGALG00000009737 2211 2.73 - - - 0.915 - 0.943 - 0.872 - - tachykinin precursor 1 [Source:HGNC Symbol;Acc:HGNC:11517]
17. ACAN ENSGALG00000006725 184 2.641 - - - - - 0.904 0.851 0.886 - - aggrecan [Source:NCBI gene;Acc:395798]
18. SCARA3 ENSGALG00000026651 2559 2.574 - - - 0.833 - 0.917 - 0.824 - - scavenger receptor class A member 3 [Source:HGNC Symbol;Acc:HGNC:19000]
19. LRRTM1 ENSGALG00000015967 85 2.536 - - - 0.836 - 0.884 - 0.816 - - leucine rich repeat transmembrane neuronal 1 [Source:HGNC Symbol;Acc:HGNC:19408]
20. RRAD ENSGALG00000005140 183 2.406 - - - - - 0.972 0.734 - - 0.700 RRAD, Ras related glycolysis inhibitor and calcium channel regulator [Source:NCBI gene;Acc:415790]
21. LECT1 LECT1 12694 2.403 - - - 0.762 - - 0.752 0.889 - -
22. WWP2 ENSGALG00000000699 5040 2.268 - - - 0.707 - 0.828 - 0.733 - - WW domain containing E3 ubiquitin protein ligase 2 [Source:NCBI gene;Acc:415868]
23. BAFF BAFF 40 2.245 - - - - 0.708 0.796 - - - 0.741
24. ENSGALG00000008822 ENSGALG00000008822 221 1.926 - - - - - 0.987 - - - 0.939
25. NPY7R ENSGALG00000021303 215 1.887 - - - 0.951 - 0.936 - - - - neuropeptide Y7 receptor [Source:NCBI gene;Acc:416280]
26. COL11A1 ENSGALG00000005180 244 1.833 - - - 0.938 - - - - - 0.895 collagen type XI alpha 1 chain [Source:HGNC Symbol;Acc:HGNC:2186]
27. PCDH17 ENSGALG00000016941 1006 1.811 - - - - - 0.920 - 0.891 - - protocadherin 17 [Source:HGNC Symbol;Acc:HGNC:14267]
28. ENSGALG00000013409 ENSGALG00000013409 4 1.729 - - - - - 0.796 - - - 0.933
29. ARHGAP39 ENSGALG00000001536 15 1.728 - - - - - - - 0.816 - 0.912 Rho GTPase activating protein 39, transcript variant X2
30. DCLRE1B ENSGALG00000028626 48 1.725 - - - - - - - 0.879 - 0.846 DNA cross-link repair 1B [Source:NCBI gene;Acc:428269]
31. TXNRD1 ENSGALG00000035345 4784 1.66 - - - 0.920 - - - - - 0.740 Gallus gallus thioredoxin reductase 1 (TXNRD1), transcript variant 2, mRNA. [Source:RefSeq mRNA;Acc:NM_001352023]
32. SCARA5 ENSGALG00000016580 712 1.657 - - - - - 0.933 - 0.724 - - scavenger receptor class A member 5 [Source:HGNC Symbol;Acc:HGNC:28701]
33. S100A9 ENSGALG00000024272 103 1.644 - - - - - - 0.777 - - 0.867 S100 calcium binding protein A9 [Source:NCBI gene;Acc:426356]
34. U2_1 U2_1 13 1.638 - - - - - - 0.804 0.834 - -
35. POMC ENSGALG00000016600 99 1.627 - - - - - - 0.741 0.886 - - proopiomelanocortin [Source:NCBI gene;Acc:422011]
36. MAVS ENSGALG00000040428 1 1.612 - - - - - 0.796 - 0.816 - - mitochondrial antiviral signaling protein [Source:NCBI gene;Acc:422936]
37. PABPN1L ENSGALG00000006242 3 1.612 - - - - - 0.796 - 0.816 - - poly(A) binding protein nuclear 1 like, cytoplasmic [Source:HGNC Symbol;Acc:HGNC:37237]
38. C17orf105 C17orf105 11 1.612 - - - - - 0.796 - 0.816 - -
39. gga-mir-6561 ENSGALG00000026650 135 1.604 - - 0.770 - - - - 0.834 - - gga-mir-6561 [Source:miRBase;Acc:MI0022379]
40. IYD ENSGALG00000012392 315 1.6 - - - - - 0.742 - - - 0.858 iodotyrosine deiodinase [Source:HGNC Symbol;Acc:HGNC:21071]
41. TRPC3 ENSGALG00000011875 9 1.592 - - - - 0.720 - - - - 0.872 transient receptor potential cation channel subfamily C member 3 [Source:NCBI gene;Acc:374153]
42. RGS4 ENSGALG00000002564 201 1.553 - - - - - 0.807 0.746 - - - regulator of G-protein signaling 4 [Source:NCBI gene;Acc:378901]
43. OTOG ENSGALG00000006208 17 1.529 - - - - - - 0.804 0.725 - - otogelin [Source:HGNC Symbol;Acc:HGNC:8516]
44. HPGDS ENSGALG00000010402 343 1.527 - - - 0.769 - - - - - 0.758 hematopoietic prostaglandin D synthase [Source:NCBI gene;Acc:395863]
45. SCIN ENSGALG00000010770 883 1.504 - - - 0.738 - 0.766 - - - - scinderin [Source:NCBI gene;Acc:420588]
46. SHH ENSGALG00000006379 1943 1.502 - - - - - - - 0.713 - 0.789 sonic hedgehog [Source:NCBI gene;Acc:395615]
47. PTPRD ENSGALG00000015058 37 1.498 - - - 0.719 - - - - - 0.779 protein tyrosine phosphatase, receptor type D [Source:HGNC Symbol;Acc:HGNC:9668]
48. SPON1 ENSGALG00000038775 16503 1.439 - - - - 0.720 - 0.719 - - - spondin 1 [Source:NCBI gene;Acc:395657]
49. FNDC1 ENSGALG00000011663 1040 0.992 - - - - - - - 0.992 - - fibronectin type III domain containing 1 [Source:HGNC Symbol;Acc:HGNC:21184]
50. PIGM ENSGALG00000010768 41 0.988 - - - - - - - 0.988 - - phosphatidylinositol glycan anchor biosynthesis class M [Source:NCBI gene;Acc:428583]
51. RASGRF2 ENSGALG00000015598 30 0.988 - - - - - - - 0.988 - - Ras protein specific guanine nucleotide releasing factor 2 [Source:HGNC Symbol;Acc:HGNC:9876]
52. APOD ENSGALG00000006995 2 0.986 - - - - - 0.986 - - - - apolipoprotein D [Source:NCBI gene;Acc:424893]
53. KCNG1 ENSGALG00000007980 26 0.986 - - - - - 0.986 - - - - potassium voltage-gated channel modifier subfamily G member 1 [Source:HGNC Symbol;Acc:HGNC:6248]
54. HOXA10 ENSGALG00000026631 1 0.986 - - - - - 0.986 - - - - homeobox A10 [Source:NCBI gene;Acc:776143]
55. LEFTY2 ENSGALG00000009256 1 0.981 - - - - - 0.981 - - - - left-right determination factor 2 [Source:NCBI gene;Acc:395529]
56. PTH3R PTH3R 214 0.981 - - - - - 0.981 - - - -
57. CCK ENSGALG00000029788 213 0.973 - - - - - 0.973 - - - - cholecystokinin [Source:NCBI gene;Acc:414884]
58. GPR158 ENSGALG00000007667 111 0.966 - - - - - - - 0.966 - - G protein-coupled receptor 158 [Source:NCBI gene;Acc:100859400]
59. SLC15A5 ENSGALG00000013097 213 0.961 - - - - - 0.961 - - - - solute carrier family 15 member 5 [Source:HGNC Symbol;Acc:HGNC:33455]
60. WIF1 ENSGALG00000039209 863 0.938 - - - - - 0.938 - - - - WNT inhibitory factor 1 [Source:NCBI gene;Acc:417831]
61. B3GNT7 ENSGALG00000007701 929 0.935 - - - - - 0.935 - - - - UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7 [Source:HGNC Symbol;Acc:HGNC:18811]
62. UGT2A1 ENSGALG00000011805 2 0.933 - - - - - - - - - 0.933 UDP glucuronosyltransferase 2 family, polypeptide A1, complex locus, transcript variant X3
63. ENSGALG00000021386 ENSGALG00000021386 29 0.933 - - - - - - - - - 0.933
64. SLC26A5 ENSGALG00000008222 3 0.933 - - - - - - - - - 0.933 solute carrier family 26 member 5 [Source:NCBI gene;Acc:417715]
65. ENSGALG00000010883 ENSGALG00000010883 10 0.933 - - - - - - - - - 0.933
66. PGR ENSGALG00000017195 2 0.933 - - - - - - - - - 0.933 progesterone receptor [Source:NCBI gene;Acc:396198]
67. FOLH1 ENSGALG00000017234 9 0.933 - - - - - - - - - 0.933 folate hydrolase 1 [Source:HGNC Symbol;Acc:HGNC:3788]
68. CNTNAP5 ENSGALG00000011577 2 0.933 - - - - - - - - - 0.933 contactin associated protein like 5 [Source:NCBI gene;Acc:424231]
69. ENSGALG00000023012 ENSGALG00000023012 2 0.933 - - - - - - - - - 0.933
70. SLC22A15 ENSGALG00000015016 12 0.933 - - - - - - - - - 0.933 solute carrier family 22 member 15 [Source:HGNC Symbol;Acc:HGNC:20301]
71. gga-mir-1556 ENSGALG00000025512 2 0.933 - - - - - - - - - 0.933 gga-mir-1556 [Source:miRBase;Acc:MI0007281]
72. ATXN1 ENSGALG00000012709 2 0.933 - - - - - - - - - 0.933 ataxin 1 [Source:HGNC Symbol;Acc:HGNC:10548]
73. MOV10 ENSGALG00000001558 244 0.918 - - - - - - - - - 0.918 Mov10 RISC complex RNA helicase [Source:NCBI gene;Acc:419872]
74. CHRDL1 ENSGALG00000008072 711 0.916 - - - - - 0.916 - - - - chordin like 1 [Source:NCBI gene;Acc:373985]
75. CXCL13L2 ENSGALG00000010338 370 0.915 - - - - - - - - - 0.915 C-X-C motif chemokine ligand 13-like 2 [Source:NCBI gene;Acc:422510]
76. ENSGALG00000028367 ENSGALG00000028367 102 0.912 - - - - - - - - - 0.912
77. PALM2 ENSGALG00000015655 20 0.911 - - - - - - - - - 0.911 paralemmin 2 [Source:HGNC Symbol;Acc:HGNC:15845]
78. MYL1 ENSGALG00000002907 1300 0.908 - - - - - 0.908 - - - - myosin, light chain 1, alkali; skeletal, fast [Source:NCBI gene;Acc:396470]
79. PLXND1 ENSGALG00000008473 21 0.906 - - - - - - - - - 0.906 plexin D1 [Source:HGNC Symbol;Acc:HGNC:9107]
80. CCL17 ENSGALG00000024466 10 0.904 - - - - - 0.904 - - - - C-C motif chemokine ligand 17 [Source:NCBI gene;Acc:415652]
81. NCBP2 ENSGALG00000006843 938 0.903 - - - - - - - 0.903 - - nuclear cap binding protein subunit 2, 20kDa [Source:NCBI gene;Acc:424889]
82. GNOT1 GNOT1 22 0.902 - - - - - - - 0.902 - -
83. KCNJ15 ENSGALG00000016055 66 0.901 - - - - - - - - - 0.901 potassium voltage-gated channel subfamily J member 15 [Source:HGNC Symbol;Acc:HGNC:6261]
84. DPY19L4 ENSGALG00000039222 30 0.899 - - - - - - - - - 0.899 dpy-19 like 4 [Source:HGNC Symbol;Acc:HGNC:27829]
85. ENSGALG00000027568 ENSGALG00000027568 3 0.892 - - - - - - - - - 0.892
86. IRF8 ENSGALG00000005757 5 0.892 - - - - - - - - - 0.892 interferon regulatory factor 8 [Source:NCBI gene;Acc:396385]
87. LRRC31 ENSGALG00000023616 55 0.889 - - - - - - - - - 0.889 leucine rich repeat containing 31 [Source:HGNC Symbol;Acc:HGNC:26261]
88. RAB3GAP2 ENSGALG00000009503 36 0.889 - - - - - - - - - 0.889 RAB3 GTPase activating non-catalytic protein subunit 2 [Source:NCBI gene;Acc:421343]
89. GEMIN8 ENSGALG00000016574 18 0.888 - - - - - - - 0.888 - - gem nuclear organelle associated protein 8 [Source:HGNC Symbol;Acc:HGNC:26044]
90. BCMO1 BCMO1 35 0.886 - - - - - - - - - 0.886
91. OBSCN ENSGALG00000032534 20 0.88 - - - 0.880 - - - - - - obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF [Source:HGNC Symbol;Acc:HGNC:15719]
92. C1orf116 ENSGALG00000001091 34 0.874 - - - - - - - - - 0.874 chromosome 1 open reading frame 116 [Source:HGNC Symbol;Acc:HGNC:28667]
93. RAB31 ENSGALG00000022874 418 0.872 - - - - - - - - - 0.872 RAB31, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:9771]
94. OSBPL10 45 0.87 - - - - - - - - - 0.870 oxysterol binding protein like 10
95. CLDN20 ENSGALG00000027634 25 0.867 - - - - - - - - - 0.867 claudin 20 [Source:HGNC Symbol;Acc:HGNC:2042]
96. PDE8B ENSGALG00000004339 2 0.86 - - - - - - - - - 0.860 phosphodiesterase 8B, transcript variant X3
97. MATN4 ENSGALG00000004028 15 0.854 - - - - - - - - - 0.854 matrilin 4 [Source:HGNC Symbol;Acc:HGNC:6910]
98. LOC428824 ENSGALG00000004393 358 0.844 - - - - - 0.844 - - - - SITS-binding protein-like, transcript variant X1
99. PCDH12 ENSGALG00000002544 36 0.842 - - - - - - - 0.842 - - protocadherin 12 [Source:HGNC Symbol;Acc:HGNC:8657]
100. EDAR ENSGALG00000016809 81 0.841 - - - - - - - 0.841 - - ectodysplasin A receptor [Source:NCBI gene;Acc:428015]

There are 307 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA