Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for Rfx4

Gene Name Gene ID Reads Annotation
Rfx4 ENSMUSG00000020037 455 regulatory factor X, 4 (influences HLA class II expression) [Source:MGI Symbol;Acc:MGI:1918387]







Genes with expression patterns similar to Rfx4

Nr. Gene Name Gene ID Reads Σ scores E10 5 slice 1 E10 5 slice 2 E10 5 slice 3 E11 5 slice 1 E11 5 slice 2 E11 5 slice 3 Annotation
1. Rfx4 ENSMUSG00000020037 455 6 1.000 1.000 1.000 1.000 1.000 1.000 regulatory factor X, 4 (influences HLA class II expression) [Source:MGI Symbol;Acc:MGI:1918387]
2. C130071C03Rik ENSMUSG00000050334 1582 4.921 0.924 0.831 0.792 0.792 0.736 0.846 RIKEN cDNA C130071C03 gene [Source:MGI Symbol;Acc:MGI:2443574]
3. Sox2 ENSMUSG00000074637 8409 4.075 0.952 0.833 0.806 0.757 - 0.727 SRY (sex determining region Y)-box 2 [Source:MGI Symbol;Acc:MGI:98364]
4. Pou3f2 ENSMUSG00000095139 2416 3.422 0.906 0.788 0.836 - - 0.892 POU domain, class 3, transcription factor 2 [Source:MGI Symbol;Acc:MGI:101895]
5. Ckb ENSMUSG00000001270 8443 3.224 0.834 0.719 0.895 0.776 - - creatine kinase, brain [Source:MGI Symbol;Acc:MGI:88407]
6. Pea15a ENSMUSG00000013698 6011 2.996 0.719 - 0.834 0.704 - 0.739 phosphoprotein enriched in astrocytes 15A [Source:MGI Symbol;Acc:MGI:104799]
7. Brsk2 ENSMUSG00000053046 398 2.95 0.758 0.702 0.706 - - 0.784 BR serine/threonine kinase 2 [Source:MGI Symbol;Acc:MGI:1923020]
8. Fgf15 ENSMUSG00000031073 527 2.427 0.763 - - - 0.765 0.899 fibroblast growth factor 15 [Source:MGI Symbol;Acc:MGI:1096383]
9. Nrarp ENSMUSG00000078202 1708 2.426 0.844 - 0.816 0.766 - - Notch-regulated ankyrin repeat protein [Source:MGI Symbol;Acc:MGI:1914372]
10. Gpr98 Gpr98 1797 2.425 0.821 - 0.894 0.710 - -
11. Slain1 ENSMUSG00000055717 237 2.39 0.861 - 0.715 - - 0.814 SLAIN motif family, member 1 [Source:MGI Symbol;Acc:MGI:2145578]
12. Igfbpl1 ENSMUSG00000035551 856 2.377 0.797 0.722 - - - 0.858 insulin-like growth factor binding protein-like 1 [Source:MGI Symbol;Acc:MGI:1933198]
13. Msi1 ENSMUSG00000054256 13785 2.37 - - 0.816 0.740 - 0.814 musashi RNA-binding protein 1 [Source:MGI Symbol;Acc:MGI:107376]
14. Sox3 ENSMUSG00000045179 1137 2.36 0.798 - 0.861 0.701 - - SRY (sex determining region Y)-box 3 [Source:MGI Symbol;Acc:MGI:98365]
15. Hap1 ENSMUSG00000006930 613 2.359 0.894 0.705 0.760 - - - huntingtin-associated protein 1 [Source:MGI Symbol;Acc:MGI:1261831]
16. Hes5 ENSMUSG00000048001 1640 2.324 0.862 - 0.706 - - 0.756 hes family bHLH transcription factor 5 [Source:MGI Symbol;Acc:MGI:104876]
17. Fabp7 ENSMUSG00000019874 3183 2.303 0.833 0.735 - 0.735 - - fatty acid binding protein 7, brain [Source:MGI Symbol;Acc:MGI:101916]
18. Sema5b ENSMUSG00000052133 891 2.293 0.797 - - 0.787 - 0.709 sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B [Source:MGI Symbol;Acc:MGI:107555]
19. Phf21b ENSMUSG00000016624 849 2.282 0.713 0.736 0.833 - - - PHD finger protein 21B [Source:MGI Symbol;Acc:MGI:2443812]
20. Pou3f3 ENSMUSG00000045515 5137 2.273 - 0.725 0.804 0.744 - - POU domain, class 3, transcription factor 3 [Source:MGI Symbol;Acc:MGI:102564]
21. Trim2 ENSMUSG00000027993 3587 2.263 0.747 - 0.746 - - 0.770 tripartite motif-containing 2 [Source:MGI Symbol;Acc:MGI:1933163]
22. 2610017I09Rik 2610017I09Rik 1595 2.246 0.782 - 0.763 - - 0.701
23. Trp53i11 ENSMUSG00000068735 15944 2.205 0.730 - 0.764 0.711 - - transformation related protein 53 inducible protein 11 [Source:MGI Symbol;Acc:MGI:2670995]
24. Srgap3 ENSMUSG00000030257 2941 2.198 0.704 - 0.784 - - 0.710 SLIT-ROBO Rho GTPase activating protein 3 [Source:MGI Symbol;Acc:MGI:2152938]
25. Sox2ot ENSMUSG00000105265 475 2.189 - 0.701 0.737 0.751 - - SOX2 overlapping transcript (non-protein coding) [Source:MGI Symbol;Acc:MGI:2444112]
26. Mkrn1 ENSMUSG00000029922 1839 2.189 0.750 - - 0.705 - 0.734 makorin, ring finger protein, 1 [Source:MGI Symbol;Acc:MGI:1859353]
27. Pcdh8 ENSMUSG00000036422 452 1.687 0.895 - 0.792 - - - protocadherin 8 [Source:MGI Symbol;Acc:MGI:1306800]
28. Ildr2 ENSMUSG00000040612 1142 1.617 0.907 0.710 - - - - immunoglobulin-like domain containing receptor 2 [Source:MGI Symbol;Acc:MGI:1196370]
29. Gbx2 ENSMUSG00000034486 478 1.602 0.887 - - 0.715 - - gastrulation brain homeobox 2 [Source:MGI Symbol;Acc:MGI:95668]
30. Zic3 ENSMUSG00000067860 549 1.602 0.858 - - - - 0.744 zinc finger protein of the cerebellum 3 [Source:MGI Symbol;Acc:MGI:106676]
31. AI854517 AI854517 539 1.582 - - - - 0.722 0.860
32. Hoxc9 ENSMUSG00000036139 4145 1.577 0.747 - 0.830 - - - homeobox C9 [Source:MGI Symbol;Acc:MGI:96199]
33. H2-K1 ENSMUSG00000061232 613 1.575 0.787 - - - - 0.788 histocompatibility 2, K1, K region [Source:MGI Symbol;Acc:MGI:95904]
34. Spata13 ENSMUSG00000021990 1020 1.575 0.860 0.715 - - - - spermatogenesis associated 13 [Source:MGI Symbol;Acc:MGI:104838]
35. Jam2 ENSMUSG00000053062 1020 1.569 0.772 - - - - 0.797 junction adhesion molecule 2 [Source:MGI Symbol;Acc:MGI:1933820]
36. Scube2 ENSMUSG00000007279 406 1.567 0.858 - 0.709 - - - signal peptide, CUB domain, EGF-like 2 [Source:MGI Symbol;Acc:MGI:1928765]
37. Fam181b ENSMUSG00000051515 734 1.559 0.799 - 0.760 - - - family with sequence similarity 181, member B [Source:MGI Symbol;Acc:MGI:1930951]
38. Pou3f1 ENSMUSG00000090125 496 1.546 0.836 0.710 - - - - POU domain, class 3, transcription factor 1 [Source:MGI Symbol;Acc:MGI:101896]
39. Hoxb9 ENSMUSG00000020875 2764 1.542 0.788 - 0.754 - - - homeobox B9 [Source:MGI Symbol;Acc:MGI:96190]
40. Celsr2 ENSMUSG00000068740 2010 1.542 - - 0.840 - - 0.702 cadherin, EGF LAG seven-pass G-type receptor 2 [Source:MGI Symbol;Acc:MGI:1858235]
41. Cspg5 ENSMUSG00000032482 105 1.534 - - 0.703 - - 0.831 chondroitin sulfate proteoglycan 5 [Source:MGI Symbol;Acc:MGI:1352747]
42. Sox1 ENSMUSG00000096014 349 1.524 0.771 - 0.753 - - - SRY (sex determining region Y)-box 1 [Source:MGI Symbol;Acc:MGI:98357]
43. Tubb2b ENSMUSG00000045136 41060 1.518 0.715 - 0.803 - - - tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
44. Itgb8 ENSMUSG00000025321 698 1.516 0.769 - - 0.747 - - integrin beta 8 [Source:MGI Symbol;Acc:MGI:1338035]
45. Sp5 ENSMUSG00000075304 106 1.516 0.797 - - - 0.719 - trans-acting transcription factor 5 [Source:MGI Symbol;Acc:MGI:1927715]
46. Olig3 ENSMUSG00000045591 1049 1.511 0.776 - - - - 0.735 oligodendrocyte transcription factor 3 [Source:MGI Symbol;Acc:MGI:2149955]
47. Miat ENSMUSG00000097767 4258 1.508 0.734 - 0.774 - - - myocardial infarction associated transcript (non-protein coding) [Source:MGI Symbol;Acc:MGI:2444886]
48. Rmst ENSMUSG00000112117 594 1.506 0.713 - - - - 0.793 rhabdomyosarcoma 2 associated transcript (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1099806]
49. Zic2 ENSMUSG00000061524 472 1.495 0.766 0.729 - - - - zinc finger protein of the cerebellum 2 [Source:MGI Symbol;Acc:MGI:106679]
50. Pax7 ENSMUSG00000028736 356 1.495 0.770 - 0.725 - - - paired box 7 [Source:MGI Symbol;Acc:MGI:97491]
51. Gadd45g ENSMUSG00000021453 1925 1.491 0.757 - 0.734 - - - growth arrest and DNA-damage-inducible 45 gamma [Source:MGI Symbol;Acc:MGI:1346325]
52. Zic1 ENSMUSG00000032368 7734 1.482 - - - 0.781 - 0.701 zinc finger protein of the cerebellum 1 [Source:MGI Symbol;Acc:MGI:106683]
53. Psat1 ENSMUSG00000024640 15774 1.473 0.726 - 0.747 - - - phosphoserine aminotransferase 1 [Source:MGI Symbol;Acc:MGI:2183441]
54. Lfng ENSMUSG00000029570 386 1.472 0.700 - - - - 0.772 LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase [Source:MGI Symbol;Acc:MGI:1095413]
55. Fzd10 ENSMUSG00000081683 998 1.471 - 0.763 - - 0.708 - frizzled class receptor 10 [Source:MGI Symbol;Acc:MGI:2136761]
56. Pou2f2 ENSMUSG00000008496 362 1.47 0.710 - - - - 0.760 POU domain, class 2, transcription factor 2 [Source:MGI Symbol;Acc:MGI:101897]
57. Prdm13 ENSMUSG00000040478 193 1.467 0.766 - 0.701 - - - PR domain containing 13 [Source:MGI Symbol;Acc:MGI:2448528]
58. Nuak2 ENSMUSG00000009772 426 1.455 0.702 - - - - 0.753 NUAK family, SNF1-like kinase, 2 [Source:MGI Symbol;Acc:MGI:1921387]
59. Wscd1 ENSMUSG00000020811 318 1.452 0.705 - - - 0.747 - WSC domain containing 1 [Source:MGI Symbol;Acc:MGI:2448493]
60. Sox21 ENSMUSG00000061517 464 1.449 - - 0.730 0.719 - - SRY (sex determining region Y)-box 21 [Source:MGI Symbol;Acc:MGI:2654070]
61. Frmd5 ENSMUSG00000027238 224 1.435 0.716 - 0.719 - - - FERM domain containing 5 [Source:MGI Symbol;Acc:MGI:2442557]
62. Bhlhe23 ENSMUSG00000045493 61 1.433 0.702 - 0.731 - - - basic helix-loop-helix family, member e23 [Source:MGI Symbol;Acc:MGI:2153710]
63. Tmem47 ENSMUSG00000025666 4252 1.412 0.710 0.702 - - - - transmembrane protein 47 [Source:MGI Symbol;Acc:MGI:2177570]
64. Rhbdl3 ENSMUSG00000017692 783 1.411 - - 0.711 - - 0.700 rhomboid like 3 [Source:MGI Symbol;Acc:MGI:2179276]
65. Msx3 ENSMUSG00000025469 236 0.888 0.888 - - - - - msh homeobox 3 [Source:MGI Symbol;Acc:MGI:106587]
66. 0610040B09Rik 0610040B09Rik 333 0.882 - - 0.882 - - -
67. Pax3 ENSMUSG00000004872 3095 0.871 0.871 - - - - - paired box 3 [Source:MGI Symbol;Acc:MGI:97487]
68. Cdk5r2 ENSMUSG00000090071 67 0.843 - - 0.843 - - - cyclin-dependent kinase 5, regulatory subunit 2 (p39) [Source:MGI Symbol;Acc:MGI:1330828]
69. Irx2 ENSMUSG00000001504 819 0.839 0.839 - - - - - Iroquois homeobox 2 [Source:MGI Symbol;Acc:MGI:1197526]
70. Hoxb1 ENSMUSG00000018973 357 0.835 0.835 - - - - - homeobox B1 [Source:MGI Symbol;Acc:MGI:96182]
71. Celsr1 ENSMUSG00000016028 500 0.835 0.835 - - - - - cadherin, EGF LAG seven-pass G-type receptor 1 [Source:MGI Symbol;Acc:MGI:1100883]
72. Dtx4 ENSMUSG00000039982 2901 0.834 - - 0.834 - - - deltex 4, E3 ubiquitin ligase [Source:MGI Symbol;Acc:MGI:2672905]
73. Zbtb18 ENSMUSG00000063659 1287 0.829 0.829 - - - - - zinc finger and BTB domain containing 18 [Source:MGI Symbol;Acc:MGI:1353609]
74. Nes ENSMUSG00000004891 8017 0.826 - - 0.826 - - - nestin [Source:MGI Symbol;Acc:MGI:101784]
75. Nova1 ENSMUSG00000021047 658 0.823 - - 0.823 - - - neuro-oncological ventral antigen 1 [Source:MGI Symbol;Acc:MGI:104297]
76. 2510009E07Rik ENSMUSG00000043391 672 0.818 0.818 - - - - - RIKEN cDNA 2510009E07 gene [Source:MGI Symbol;Acc:MGI:1919440]
77. Zic5 ENSMUSG00000041703 1240 0.815 0.815 - - - - - zinc finger protein of the cerebellum 5 [Source:MGI Symbol;Acc:MGI:1929518]
78. Lect1 122 0.814 - - 0.814 - - - leukocyte cell derived chemotaxin 1, transcript variant X3
79. Wnt7a ENSMUSG00000030093 126 0.814 - - 0.814 - - - wingless-type MMTV integration site family, member 7A [Source:MGI Symbol;Acc:MGI:98961]
80. Mapk4 ENSMUSG00000024558 228 0.8 - - - - - 0.800 mitogen-activated protein kinase 4 [Source:MGI Symbol;Acc:MGI:2444559]
81. Gm20501 ENSMUSG00000092536 57 0.798 - - 0.798 - - - predicted gene 20501 [Source:MGI Symbol;Acc:MGI:5141966]
82. Cercam ENSMUSG00000039787 610 0.797 0.797 - - - - - cerebral endothelial cell adhesion molecule [Source:MGI Symbol;Acc:MGI:2139134]
83. Nedd9 ENSMUSG00000021365 1501 0.797 0.797 - - - - - neural precursor cell expressed, developmentally down-regulated gene 9 [Source:MGI Symbol;Acc:MGI:97302]
84. Zcchc18 ENSMUSG00000031428 2572 0.796 0.796 - - - - - zinc finger, CCHC domain containing 18 [Source:MGI Symbol;Acc:MGI:1914245]
85. Dcc ENSMUSG00000060534 107 0.792 - - 0.792 - - - deleted in colorectal carcinoma [Source:MGI Symbol;Acc:MGI:94869]
86. Sall3 ENSMUSG00000024565 449 0.792 - - 0.792 - - - spalt like transcription factor 3 [Source:MGI Symbol;Acc:MGI:109295]
87. Phyhipl ENSMUSG00000037747 636 0.786 - - 0.786 - - - phytanoyl-CoA hydroxylase interacting protein-like [Source:MGI Symbol;Acc:MGI:1918161]
88. Ap3b2 ENSMUSG00000062444 565 0.784 - - 0.784 - - - adaptor-related protein complex 3, beta 2 subunit [Source:MGI Symbol;Acc:MGI:1100869]
89. Slc1a2 ENSMUSG00000005089 830 0.781 0.781 - - - - - solute carrier family 1 (glial high affinity glutamate transporter), member 2 [Source:MGI Symbol;Acc:MGI:101931]
90. Pou3f4 ENSMUSG00000056854 95 0.778 0.778 - - - - - POU domain, class 3, transcription factor 4 [Source:MGI Symbol;Acc:MGI:101894]
91. Gm17750 ENSMUSG00000098087 25 0.777 - - - - - 0.777 predicted gene, 17750 [Source:MGI Symbol;Acc:MGI:5009828]
92. Zic4 ENSMUSG00000036972 1968 0.776 - - - - - 0.776 zinc finger protein of the cerebellum 4 [Source:MGI Symbol;Acc:MGI:107201]
93. Nhlh2 ENSMUSG00000048540 1310 0.775 - - - - - 0.775 nescient helix loop helix 2 [Source:MGI Symbol;Acc:MGI:97324]
94. Lrrc4 ENSMUSG00000049939 109 0.77 0.770 - - - - - leucine rich repeat containing 4 [Source:MGI Symbol;Acc:MGI:2182081]
95. Wnt3a ENSMUSG00000009900 70 0.768 - - - - - 0.768 wingless-type MMTV integration site family, member 3A [Source:MGI Symbol;Acc:MGI:98956]
96. Draxin ENSMUSG00000029005 726 0.766 0.766 - - - - - dorsal inhibitory axon guidance protein [Source:MGI Symbol;Acc:MGI:1917683]
97. Pax6 ENSMUSG00000027168 2751 0.766 0.766 - - - - - paired box 6 [Source:MGI Symbol;Acc:MGI:97490]
98. Ascl4 ENSMUSG00000085111 8 0.765 - - - - 0.765 - achaete-scute family bHLH transcription factor 4 [Source:MGI Symbol;Acc:MGI:1914591]
99. Hoxd1 ENSMUSG00000042448 332 0.765 - - - - - 0.765 homeobox D1 [Source:MGI Symbol;Acc:MGI:96201]
100. Dll3 ENSMUSG00000003436 1086 0.764 - - - - - 0.764 delta like canonical Notch ligand 3 [Source:MGI Symbol;Acc:MGI:1096877]

There are 68 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA