Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for RTN4

Gene Name Gene ID Reads Annotation
RTN4 ENSGALG00000029261 45730 reticulon 4 [Source:NCBI gene;Acc:378790]











Genes with expression patterns similar to RTN4

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. RTN4 ENSGALG00000029261 45730 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 reticulon 4 [Source:NCBI gene;Acc:378790]
2. RRN3 ENSGALG00000041989 3934 1.677 - - 0.913 - - - - 0.764 - - RRN3 homolog, RNA polymerase I transcription factor [Source:NCBI gene;Acc:416414]
3. RALGDS ENSGALG00000003412 4478 1.585 - - 0.884 - - - 0.701 - - - ral guanine nucleotide dissociation stimulator, transcript variant X10
4. SQLE ENSGALG00000036915 4172 1.556 - - 0.835 - - - - 0.721 - - squalene epoxidase [Source:NCBI gene;Acc:420335]
5. HBXIP HBXIP 8637 1.502 - - 0.740 - - - - 0.762 - -
6. HDAC2 ENSGALG00000014991 23458 0.996 - - - - - - 0.996 - - - histone deacetylase 2 [Source:NCBI gene;Acc:395635]
7. MRPS18C ENSGALG00000023191 6293 0.987 - - - - - - 0.987 - - - mitochondrial ribosomal protein S18C [Source:NCBI gene;Acc:770813]
8. GGT7 ENSGALG00000001062 476 0.944 - - 0.944 - - - - - - - gamma-glutamyltransferase 7 [Source:HGNC Symbol;Acc:HGNC:4259]
9. PCDH17 ENSGALG00000016941 1006 0.938 - - 0.938 - - - - - - - protocadherin 17 [Source:HGNC Symbol;Acc:HGNC:14267]
10. WDR92 ENSGALG00000008760 3934 0.936 - - 0.936 - - - - - - - WD repeat domain 92 [Source:NCBI gene;Acc:769534]
11. MIB1 ENSGALG00000014974 3583 0.934 - - 0.934 - - - - - - - mindbomb E3 ubiquitin protein ligase 1 [Source:HGNC Symbol;Acc:HGNC:21086]
12. PCYT1B 190 0.933 - - 0.933 - - - - - - - phosphate cytidylyltransferase 1, choline, beta, transcript variant X4
13. CLEC16A ENSGALG00000007167 66 0.932 - - 0.932 - - - - - - - C-type lectin domain containing 16A [Source:HGNC Symbol;Acc:HGNC:29013]
14. SMARCAD1 ENSGALG00000037339 149 0.929 - - 0.929 - - - - - - - SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 [Source:HGNC Symbol;Acc:HGNC:18398]
15. BBS5 ENSGALG00000009846 344 0.929 - - 0.929 - - - - - - - Bardet-Biedl syndrome 5 [Source:NCBI gene;Acc:424165]
16. GFER ENSGALG00000005579 1367 0.928 - - 0.928 - - - - - - - growth factor, augmenter of liver regeneration [Source:HGNC Symbol;Acc:HGNC:4236]
17. ENSGALG00000020103 ENSGALG00000020103 64 0.928 - - 0.928 - - - - - - -
18. TCTN2 ENSGALG00000023683 3596 0.927 - - 0.927 - - - - - - - tectonic family member 2 [Source:HGNC Symbol;Acc:HGNC:25774]
19. LRRC71 ENSGALG00000027351 695 0.927 - - 0.927 - - - - - - - leucine rich repeat containing 71 [Source:HGNC Symbol;Acc:HGNC:26556]
20. ENSGALG00000004703 ENSGALG00000004703 112 0.926 - - 0.926 - - - - - - -
21. ITGB4 ENSGALG00000002389 44 0.926 - - 0.926 - - - - - - - integrin subunit beta 4 [Source:HGNC Symbol;Acc:HGNC:6158]
22. GTF2H2 ENSGALG00000002399 2361 0.926 - - 0.926 - - - - - - - general transcription factor IIH subunit 2, transcript variant X2
23. TDRD6 48 0.926 - - 0.926 - - - - - - - tudor domain containing 6
24. UEVLD ENSGALG00000006342 164 0.926 - - 0.926 - - - - - - - UEV and lactate/malate dehyrogenase domains [Source:NCBI gene;Acc:100858486]
25. GDPD4 ENSGALG00000000690 824 0.926 - - 0.926 - - - - - - - glycerophosphodiester phosphodiesterase domain containing 4 [Source:HGNC Symbol;Acc:HGNC:24849]
26. CHAMP1 ENSGALG00000016813 508 0.926 - - 0.926 - - - - - - - chromosome alignment maintaining phosphoprotein 1 [Source:HGNC Symbol;Acc:HGNC:20311]
27. DBN1 ENSGALG00000033405 216 0.926 - - 0.926 - - - - - - - drebrin 1 [Source:NCBI gene;Acc:396496]
28. MRC2 ENSGALG00000000461 48 0.926 - - 0.926 - - - - - - - mannose receptor C type 2 [Source:HGNC Symbol;Acc:HGNC:16875]
29. SZT2 ENSGALG00000028561 255 0.925 - - 0.925 - - - - - - - seizure threshold 2 homolog (mouse) [Source:NCBI gene;Acc:424566]
30. BBX ENSGALG00000015353 1281 0.925 - - 0.925 - - - - - - - BBX, HMG-box containing [Source:HGNC Symbol;Acc:HGNC:14422]
31. TRIM13 ENSGALG00000017011 92 0.925 - - 0.925 - - - - - - - tripartite motif containing 13 [Source:HGNC Symbol;Acc:HGNC:9976]
32. FBXL5 ENSGALG00000014510 245 0.925 - - 0.925 - - - - - - - F-box and leucine rich repeat protein 5 [Source:HGNC Symbol;Acc:HGNC:13602]
33. F2R ENSGALG00000014983 106 0.925 - - 0.925 - - - - - - - coagulation factor II thrombin receptor [Source:HGNC Symbol;Acc:HGNC:3537]
34. ENSGALG00000028964 ENSGALG00000028964 46 0.925 - - 0.925 - - - - - - -
35. RAD54L2 ENSGALG00000003243 187 0.925 - - 0.925 - - - - - - - RAD54-like 2 (S. cerevisiae) [Source:NCBI gene;Acc:415933]
36. AKAP10 ENSGALG00000004679 103 0.925 - - 0.925 - - - - - - - A-kinase anchoring protein 10 [Source:HGNC Symbol;Acc:HGNC:368]
37. FAM134C 860 0.924 - - 0.924 - - - - - - - family with sequence similarity 134 member C
38. MED12 ENSGALG00000036322 814 0.924 - - 0.924 - - - - - - - mediator complex subunit 12 [Source:HGNC Symbol;Acc:HGNC:11957]
39. RQCD1 RQCD1 110 0.924 - - 0.924 - - - - - - -
40. CDC14B ENSGALG00000012627 110 0.924 - - 0.924 - - - - - - - Gallus gallus cell division cycle 14B (CDC14B), mRNA. [Source:RefSeq mRNA;Acc:NM_001318405]
41. NXPE3 ENSGALG00000015344 111 0.924 - - 0.924 - - - - - - - neurexophilin and PC-esterase domain family member 3 [Source:HGNC Symbol;Acc:HGNC:28238]
42. SGCE ENSGALG00000009670 3070 0.924 - - 0.924 - - - - - - - sarcoglycan epsilon [Source:HGNC Symbol;Acc:HGNC:10808]
43. SLC3A1 ENSGALG00000009973 608 0.923 - - 0.923 - - - - - - - solute carrier family 3 member 1 [Source:HGNC Symbol;Acc:HGNC:11025]
44. ENSGALG00000002020 ENSGALG00000002020 183 0.923 - - 0.923 - - - - - - -
45. L3MBTL3 ENSGALG00000034030 113 0.923 - - 0.923 - - - - - - - L3MBTL3, histone methyl-lysine binding protein [Source:HGNC Symbol;Acc:HGNC:23035]
46. ITM2B ENSGALG00000016996 1112 0.922 - - 0.922 - - - - - - - integral membrane protein 2B [Source:NCBI gene;Acc:395969]
47. PTDSS2 ENSGALG00000004300 682 0.922 - - 0.922 - - - - - - - phosphatidylserine synthase 2 [Source:NCBI gene;Acc:422997]
48. RPS6KB1 ENSGALG00000005198 169 0.921 - - 0.921 - - - - - - - ribosomal protein S6 kinase B1 [Source:NCBI gene;Acc:417637]
49. LRRC42 ENSGALG00000010743 384 0.921 - - 0.921 - - - - - - - leucine rich repeat containing 42 [Source:HGNC Symbol;Acc:HGNC:28792]
50. OSGIN2 ENSGALG00000042840 83 0.92 - - 0.920 - - - - - - - oxidative stress induced growth inhibitor family member 2 [Source:HGNC Symbol;Acc:HGNC:1355]
51. U4 U4 69 0.92 - - 0.920 - - - - - - -
52. PRUNE PRUNE 452 0.917 - - 0.917 - - - - - - -
53. CHGA ENSGALG00000010820 1028 0.916 - - 0.916 - - - - - - - chromogranin A [Source:HGNC Symbol;Acc:HGNC:1929]
54. MLLT3 ENSGALG00000015078 502 0.916 - - 0.916 - - - - - - - MLLT3, super elongation complex subunit [Source:HGNC Symbol;Acc:HGNC:7136]
55. AASDHPPT ENSGALG00000027981 1017 0.916 - - 0.916 - - - - - - - aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase [Source:NCBI gene;Acc:418975]
56. GCC2 ENSGALG00000016806 1085 0.916 - - 0.916 - - - - - - - GRIP and coiled-coil domain containing 2 [Source:HGNC Symbol;Acc:HGNC:23218]
57. ABCC3 ENSGALG00000007522 340 0.915 - - 0.915 - - - - - - - ATP binding cassette subfamily C member 3, transcript variant X5
58. KCTD3 ENSGALG00000009678 335 0.915 - - 0.915 - - - - - - - potassium channel tetramerization domain containing 3 [Source:HGNC Symbol;Acc:HGNC:21305]
59. ABCE1 ENSGALG00000009961 958 0.914 - - 0.914 - - - - - - - ATP binding cassette subfamily E member 1 [Source:NCBI gene;Acc:422462]
60. TTPAL ENSGALG00000004244 2734 0.914 - - 0.914 - - - - - - - alpha tocopherol transfer protein like [Source:NCBI gene;Acc:419197]
61. CHALK5 CHALK5 1351 0.913 - - 0.913 - - - - - - -
62. ATF7IP ENSGALG00000011814 1571 0.913 - - 0.913 - - - - - - - activating transcription factor 7 interacting protein [Source:NCBI gene;Acc:417966]
63. ATP8B4 ENSGALG00000002326 456 0.912 - - 0.912 - - - - - - - ATPase phospholipid transporting 8B4 (putative), transcript variant X4
64. TMEM242 ENSGALG00000013689 377 0.911 - - 0.911 - - - - - - - transmembrane protein 242 [Source:HGNC Symbol;Acc:HGNC:17206]
65. TUBA4A ENSGALG00000000433 1367 0.911 - - 0.911 - - - - - - - tubulin alpha 4a
66. SMOC2 ENSGALG00000011205 340 0.911 - - 0.911 - - - - - - - SPARC related modular calcium binding 2 [Source:HGNC Symbol;Acc:HGNC:20323]
67. KDM6A ENSGALG00000016217 2302 0.909 - - 0.909 - - - - - - - lysine demethylase 6A, transcript variant X14
68. SELK SELK 15022 0.909 - - 0.909 - - - - - - -
69. PRPF38B ENSGALG00000001972 2009 0.909 - - 0.909 - - - - - - - pre-mRNA processing factor 38B
70. SETD1B ENSGALG00000004324 2897 0.909 - - 0.909 - - - - - - - SET domain containing 1B [Source:NCBI gene;Acc:416851]
71. RFK ENSGALG00000033558 1364 0.908 - - 0.908 - - - - - - - riboflavin kinase, transcript variant X3
72. MED15 ENSGALG00000006430 814 0.908 - - 0.908 - - - - - - - mediator complex subunit 15 [Source:HGNC Symbol;Acc:HGNC:14248]
73. TUBGCP3 ENSGALG00000016836 332 0.908 - - 0.908 - - - - - - - tubulin gamma complex associated protein 3 [Source:HGNC Symbol;Acc:HGNC:18598]
74. BTG1L ENSGALG00000004676 2293 0.907 - - 0.907 - - - - - - - protein BTG1-like
75. ADK ENSGALG00000005057 199 0.907 - - 0.907 - - - - - - - adenosine kinase [Source:NCBI gene;Acc:423735]
76. CENPO ENSGALG00000016609 1699 0.905 - - 0.905 - - - - - - - centromere protein O [Source:NCBI gene;Acc:422014]
77. AMFR ENSGALG00000003107 6560 0.905 - - 0.905 - - - - - - - autocrine motility factor receptor [Source:HGNC Symbol;Acc:HGNC:463]
78. NDUFB1 ENSGALG00000028537 2059 0.904 - - 0.904 - - - - - - - NADH:ubiquinone oxidoreductase subunit B1 [Source:NCBI gene;Acc:423415]
79. RECQL ENSGALG00000013174 1323 0.904 - - 0.904 - - - - - - - RecQ like helicase [Source:NCBI gene;Acc:378910]
80. SLK ENSGALG00000008318 2220 0.903 - - 0.903 - - - - - - - STE20 like kinase [Source:HGNC Symbol;Acc:HGNC:11088]
81. WHSC1 1712 0.903 - - 0.903 - - - - - - - Wolf-Hirschhorn syndrome candidate 1, transcript variant X14
82. CMTM8 ENSGALG00000011484 2826 0.903 - - 0.903 - - - - - - - CKLF like MARVEL transmembrane domain containing 8 [Source:NCBI gene;Acc:420665]
83. AKT3 ENSGALG00000034081 866 0.902 - - 0.902 - - - - - - - AKT serine/threonine kinase 3 [Source:HGNC Symbol;Acc:HGNC:393]
84. CEP104 ENSGALG00000000978 1130 0.902 - - 0.902 - - - - - - - centrosomal protein 104 [Source:HGNC Symbol;Acc:HGNC:24866]
85. SESN1 ENSGALG00000015286 2387 0.901 - - 0.901 - - - - - - - sestrin 1 [Source:HGNC Symbol;Acc:HGNC:21595]
86. DCP1B 1306 0.901 - - 0.901 - - - - - - - decapping mRNA 1B
87. ENSGALG00000008689 ENSGALG00000008689 232 0.901 - - 0.901 - - - - - - -
88. IFT81 ENSGALG00000003854 2534 0.899 - - 0.899 - - - - - - - intraflagellar transport 81 [Source:NCBI gene;Acc:416839]
89. GTF2E1 ENSGALG00000042320 7712 0.899 - - 0.899 - - - - - - - general transcription factor IIE subunit 1 [Source:HGNC Symbol;Acc:HGNC:4650]
90. NGF ENSGALG00000002556 122 0.899 - - 0.899 - - - - - - - nerve growth factor [Source:NCBI gene;Acc:396466]
91. LBR 6686 0.898 - - 0.898 - - - - - - - lamin B receptor, transcript variant X4
92. gga-mir-762 ENSGALG00000025437 24823 0.898 - - 0.898 - - - - - - - gga-mir-762 [Source:miRBase;Acc:MI0008209]
93. WAPAL WAPAL 625 0.897 - - 0.897 - - - - - - -
94. AKTIP ENSGALG00000033378 1991 0.896 - - 0.896 - - - - - - - AKT interacting protein [Source:NCBI gene;Acc:415720]
95. ZNF451 ENSGALG00000016282 3380 0.895 - - 0.895 - - - - - - - zinc finger protein 451 [Source:HGNC Symbol;Acc:HGNC:21091]
96. CA9 ENSGALG00000021340 1431 0.895 - - 0.895 - - - - - - - carbonic anhydrase 9 [Source:HGNC Symbol;Acc:HGNC:1383]
97. N4BP2L2 857 0.895 - - 0.895 - - - - - - - NEDD4 binding protein 2 like 2, transcript variant X7
98. SOBP ENSGALG00000043047 147 0.894 - - 0.894 - - - - - - - sine oculis binding protein homolog [Source:NCBI gene;Acc:421775]
99. DDX6 ENSGALG00000033064 2193 0.893 - - 0.893 - - - - - - - DEAD-box helicase 6 [Source:NCBI gene;Acc:419783]
100. PEMT ENSGALG00000004875 4094 0.893 - - 0.893 - - - - - - - phosphatidylethanolamine N-methyltransferase [Source:NCBI gene;Acc:416508]

There are 422 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA