Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Chicken data search


search
Exact
Search
Limit to:

{{libname.name}} 

Results for RTN1

Gene Name Gene ID Reads Annotation
RTN1 ENSGALG00000012006 2438 reticulon 1 [Source:NCBI gene;Acc:378791]











Genes with expression patterns similar to RTN1

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. RTN1 ENSGALG00000012006 2438 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 reticulon 1 [Source:NCBI gene;Acc:378791]
2. TAGLN3 ENSGALG00000015379 7865 4.092 - - 0.900 0.716 0.892 - - - 0.792 0.792 transgelin 3 [Source:HGNC Symbol;Acc:HGNC:29868]
3. NFASC ENSGALG00000031776 4264 3.986 - - 0.729 0.789 - 0.732 - - 0.857 0.879 neurofascin [Source:NCBI gene;Acc:419824]
4. NEFL ENSGALG00000000314 4883 3.301 - - 0.843 0.703 - - - - 0.814 0.941 neurofilament light [Source:HGNC Symbol;Acc:HGNC:7739]
5. MARCKSL1 ENSGALG00000032335 88728 3.055 - - 0.779 - - 0.760 - - 0.763 0.753 MARCKS like 1 [Source:NCBI gene;Acc:770764]
6. GPM6A ENSGALG00000043480 2133 2.643 - - 0.842 - - - - - 0.912 0.889 glycoprotein M6A [Source:NCBI gene;Acc:422569]
7. NSG1 ENSGALG00000015010 5829 2.631 - - - - - 0.899 - - 0.880 0.852 neuron specific gene family member 1 [Source:NCBI gene;Acc:395251]
8. ELAVL4 ENSGALG00000010533 4978 2.55 - - - 0.783 - - - - 0.861 0.906 ELAV like RNA binding protein 4 [Source:NCBI gene;Acc:395634]
9. STMN2 ENSGALG00000039690 989 2.523 - - - 0.776 - - - - 0.840 0.907 stathmin 2 [Source:NCBI gene;Acc:396095]
10. ASTN1 ENSGALG00000004472 855 2.498 - - - - - 0.774 - - 0.853 0.871 astrotactin 1 [Source:HGNC Symbol;Acc:HGNC:773]
11. SYT4 ENSGALG00000042626 384 2.49 - - 0.722 - - - - - 0.918 0.850 synaptotagmin 4 [Source:HGNC Symbol;Acc:HGNC:11512]
12. NEFM ENSGALG00000000317 6992 2.467 - - - 0.717 - 0.790 - - - 0.960 neurofilament medium [Source:NCBI gene;Acc:396206]
13. MYT1 ENSGALG00000005932 2017 2.463 - - 0.730 - - - - - 0.818 0.915 myelin transcription factor 1 [Source:HGNC Symbol;Acc:HGNC:7622]
14. SCML4 ENSGALG00000015309 499 2.456 - - 0.718 - - - - - 0.859 0.879 Scm polycomb group protein like 4 [Source:HGNC Symbol;Acc:HGNC:21397]
15. MAP2 ENSGALG00000002789 6597 2.419 - - - - - 0.790 - - 0.788 0.841 microtubule associated protein 2, transcript variant X33
16. FABP7 ENSGALG00000038933 6780 2.418 - - - - - 0.828 - - 0.717 0.873 fatty acid binding protein 7 [Source:NCBI gene;Acc:396246]
17. NHLH1 ENSGALG00000025817 1617 2.416 - - 0.892 - - - - - 0.722 0.802 nescient helix-loop-helix 1 [Source:NCBI gene;Acc:373910]
18. DENND5B 4077 2.408 - - 0.721 - - 0.887 - - - 0.800 DENN domain containing 5B, transcript variant X1
19. ECEL1 ENSGALG00000030420 670 2.406 - - 0.741 - - - - - 0.795 0.870 endothelin converting enzyme like 1 [Source:HGNC Symbol;Acc:HGNC:3147]
20. TUBB2B ENSGALG00000012821 41535 2.404 - - 0.721 - - - - - 0.899 0.784 tubulin beta 2B class IIb [Source:NCBI gene;Acc:420883]
21. HES5 ENSGALG00000001141 6514 2.397 - - 0.786 - 0.783 0.828 - - - - hes family bHLH transcription factor 5 [Source:NCBI gene;Acc:419392]
22. UCH-L1 UCH-L1 12697 2.392 - - - - 0.714 - - - 0.894 0.784
23. SLC10A4 ENSGALG00000033908 300 2.374 - - 0.706 - - - - - 0.839 0.829 solute carrier family 10 member 4 [Source:HGNC Symbol;Acc:HGNC:22980]
24. GABRA3 ENSGALG00000007269 985 2.367 - - - - 0.814 0.770 - - 0.783 - gamma-aminobutyric acid type A receptor alpha3 subunit [Source:HGNC Symbol;Acc:HGNC:4077]
25. PLPPR1 ENSGALG00000015542 3179 2.358 - - 0.732 - - - - - 0.738 0.888 phospholipid phosphatase related 1 [Source:HGNC Symbol;Acc:HGNC:25993]
26. CRMP1B CRMP1B 18633 2.358 - - 0.820 - - - - - 0.758 0.780
27. ZIC1 ENSGALG00000040532 6543 2.357 - - 0.800 - - 0.851 - - 0.706 - Zic family member 1 [Source:NCBI gene;Acc:374103]
28. CRABP-I ENSGALG00000003193 67258 2.321 - - 0.794 - 0.714 0.813 - - - - cellular retinoic acid binding protein 1 [Source:NCBI gene;Acc:374211]
29. CXCR4 ENSGALG00000012357 1320 2.305 - - - - - 0.778 0.813 - - 0.714 C-X-C motif chemokine receptor 4 [Source:NCBI gene;Acc:395324]
30. MNR2 ENSGALG00000011349 3340 2.26 - - 0.734 - - - - - 0.767 0.759 homeodomain protein
31. ISL1 ENSGALG00000014884 7666 1.784 - - - - - - - - 0.846 0.938 ISL LIM homeobox 1 [Source:NCBI gene;Acc:396383]
32. EF1A EF1A 2378 1.778 - - - - - - - - 0.887 0.891
33. SIAT8C SIAT8C 178 1.747 - - - - - - - - 0.859 0.888
34. GRM3 ENSGALG00000006576 474 1.739 - - - - - - - - 0.829 0.910 glutamate metabotropic receptor 3 [Source:HGNC Symbol;Acc:HGNC:4595]
35. GAP43 ENSGALG00000015089 505 1.712 - - - - - - - - 0.844 0.868 growth associated protein 43 [Source:NCBI gene;Acc:427955]
36. INA ENSGALG00000028238 208 1.708 - - - - - - - - 0.903 0.805 internexin neuronal intermediate filament protein alpha
37. MYT1L ENSGALG00000016384 147 1.69 - - - - - 0.803 - - - 0.887 myelin transcription factor 1 like [Source:HGNC Symbol;Acc:HGNC:7623]
38. STMN1 ENSGALG00000001475 225354 1.68 - - - - - - - - 0.816 0.864 stathmin 1 [Source:NCBI gene;Acc:396057]
39. SNAP25 ENSGALG00000009003 222 1.673 - - - - - - - - 0.751 0.922 synaptosome associated protein 25 [Source:NCBI gene;Acc:396444]
40. RUSC2 ENSGALG00000002371 272 1.672 - - - - - - - - 0.891 0.781 RUN and SH3 domain containing 2 [Source:HGNC Symbol;Acc:HGNC:23625]
41. CERCAM ENSGALG00000004986 5158 1.656 - - 0.795 - - 0.861 - - - - cerebral endothelial cell adhesion molecule [Source:HGNC Symbol;Acc:HGNC:23723]
42. EFCAB6 ENSGALG00000014188 139 1.655 - - - - - - - - 0.839 0.816 EF-hand calcium binding domain 6, transcript variant X3
43. HMP19 ENSGALG00000028602 1604 1.645 - - 0.839 - - - - - - 0.806 Gallus gallus HMP19 protein (HMP19), mRNA. [Source:RefSeq mRNA;Acc:NM_001326465]
44. MAP1B ENSGALG00000014999 6288 1.643 - - - - - - - - 0.723 0.920 microtubule associated protein 1B
45. HMGCS1 ENSGALG00000014862 2846 1.635 - - - - - - - - 0.905 0.730 3-hydroxy-3-methylglutaryl-CoA synthase 1 [Source:NCBI gene;Acc:396379]
46. SMPD3 ENSGALG00000034950 4335 1.63 - - - - 0.806 0.824 - - - - sphingomyelin phosphodiesterase 3 [Source:HGNC Symbol;Acc:HGNC:14240]
47. SLC5A7 ENSGALG00000016804 93 1.623 - - - - - - - - 0.843 0.780 solute carrier family 5 member 7 [Source:NCBI gene;Acc:414870]
48. MNX1 ENSGALG00000041154 244 1.592 - - - - - - - - 0.808 0.784 motor neuron and pancreas homeobox 1 [Source:NCBI gene;Acc:395768]
49. BAI1 BAI1 235 1.579 - - - - - - - - 0.769 0.810
50. LFNG ENSGALG00000038515 5178 1.573 - - 0.753 - - 0.820 - - - - LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase [Source:NCBI gene;Acc:395790]
51. TMSB10 TMSB10 518 1.571 - - 0.865 - - - - - - 0.706
52. FZD3 ENSGALG00000042308 3356 1.564 - - - - - 0.818 - - 0.746 - frizzled class receptor 3 [Source:NCBI gene;Acc:395572]
53. WSCD2 ENSGALG00000004849 477 1.562 - - 0.785 - - - - - - 0.777 WSC domain containing 2 [Source:HGNC Symbol;Acc:HGNC:29117]
54. HOXB-7 HOXB-7 2066 1.56 - - 0.743 - 0.817 - - - - -
55. SNAP91 ENSGALG00000015846 148 1.559 - - - - - - - - 0.723 0.836 synaptosome associated protein 91 [Source:NCBI gene;Acc:428635]
56. GDI2 ENSGALG00000008169 67151 1.546 - - - - - - - - 0.804 0.742 GDP dissociation inhibitor 2 [Source:NCBI gene;Acc:395854]
57. GNG10 ENSGALG00000015683 6905 1.52 - - - - 0.716 0.804 - - - - G protein subunit gamma 10 [Source:NCBI gene;Acc:769603]
58. ZBTB18 ENSGALG00000010705 3433 1.519 - - 0.707 - - - - - - 0.812 zinc finger and BTB domain containing 18 [Source:HGNC Symbol;Acc:HGNC:13030]
59. SHISA3 ENSGALG00000026042 1108 1.518 - - 0.753 0.765 - - - - - - shisa family member 3 [Source:HGNC Symbol;Acc:HGNC:25159]
60. GNG2 ENSGALG00000027629 9404 1.506 - - - - - - - - 0.726 0.780 G protein subunit gamma 2 [Source:NCBI gene;Acc:423581]
61. ZIC3 ENSGALG00000031144 863 1.496 - - - - - 0.788 - 0.708 - - Zic family member 3 [Source:HGNC Symbol;Acc:HGNC:12874]
62. TBC1D30 ENSGALG00000009859 994 1.493 - - - - - - - - 0.727 0.766 TBC1 domain family member 30 [Source:HGNC Symbol;Acc:HGNC:29164]
63. RGMA ENSGALG00000039173 12874 1.491 - - - - - - - - 0.740 0.751 repulsive guidance molecule family member a [Source:NCBI gene;Acc:395214]
64. CSPG5 ENSGALG00000032184 991 1.476 - - 0.759 - 0.717 - - - - - chondroitin sulfate proteoglycan 5 [Source:NCBI gene;Acc:395466]
65. PROCA1 668 1.471 - - 0.770 0.701 - - - - - - protein interacting with cyclin A1
66. KIAA0408 ENSGALG00000030211 934 1.462 - - 0.741 - - - - - - 0.721 KIAA0408 [Source:HGNC Symbol;Acc:HGNC:21636]
67. GADD45_1 GADD45_1 1433 1.457 - - - - - 0.702 - - - 0.755
68. NOVA1 ENSGALG00000009850 7584 1.457 - - - - - - - - 0.717 0.740 uncharacterized LOC423300 [Source:NCBI gene;Acc:423300]
69. RASSF2 ENSGALG00000030432 4822 1.452 - - 0.705 - - 0.747 - - - - Ras association domain family member 2 [Source:NCBI gene;Acc:419521]
70. DACH1 ENSGALG00000037015 5648 1.445 - - - - - 0.717 - - - 0.728 dachshund family transcription factor 1 [Source:NCBI gene;Acc:373935]
71. LOC419390 ENSGALG00000001136 607 1.44 - - 0.716 - - 0.724 - - - - hairy and enhancer of split 5-like, transcript variant X1
72. MAP6 ENSGALG00000007441 585 1.421 - - - - - - - - 0.710 0.711 microtubule associated protein 6 [Source:NCBI gene;Acc:395753]
73. SRGAP3 ENSGALG00000008378 4331 0.897 - - - - - 0.897 - - - - SLIT-ROBO Rho GTPase activating protein 3 [Source:NCBI gene;Acc:416115]
74. LIPG ENSGALG00000043734 2490 0.896 - - - - - 0.896 - - - - lipase G, endothelial type [Source:HGNC Symbol;Acc:HGNC:6623]
75. Sep-03 Sep-03 109 0.869 - - - - - - - - - 0.869
76. DPYSL4 ENSGALG00000010490 3431 0.866 - - - - - - - - 0.866 - dihydropyrimidinase like 4 [Source:HGNC Symbol;Acc:HGNC:3016]
77. FABP5 ENSGALG00000041344 3984 0.865 - - - - - - - - - 0.865 fatty acid binding protein 5 [Source:NCBI gene;Acc:420197]
78. SLC7A11 ENSGALG00000009758 104 0.857 - - - - - 0.857 - - - - solute carrier family 7 member 11 [Source:HGNC Symbol;Acc:HGNC:11059]
79. DLL1 ENSGALG00000011182 1613 0.857 - - - - - 0.857 - - - - delta like canonical Notch ligand 1 [Source:NCBI gene;Acc:395820]
80. CACNG2 ENSGALG00000031977 196 0.852 - - - - - - - - 0.852 - calcium voltage-gated channel auxiliary subunit gamma 2 [Source:HGNC Symbol;Acc:HGNC:1406]
81. CDH12 ENSGALG00000012941 223 0.85 - - - - - - - - - 0.850 cadherin 12, transcript variant X8
82. PCDHA11 58 0.847 - - - - - - - - - 0.847 protocadherin alpha 11
83. C17orf75 ENSGALG00000003434 4262 0.846 - - - - - 0.846 - - - - chromosome 17 open reading frame 75 [Source:HGNC Symbol;Acc:HGNC:30173]
84. WNT4 ENSGALG00000041708 1277 0.836 - - - - - 0.836 - - - - Wnt family member 4 [Source:NCBI gene;Acc:395561]
85. ENSGALG00000027373 ENSGALG00000027373 2129 0.834 - - - - 0.834 - - - - -
86. UTS2D UTS2D 2246 0.834 - - - - - - - - - 0.834
87. HOXA7 ENSGALG00000026989 6746 0.832 - - - - - - - - 0.832 - homeobox A7 [Source:NCBI gene;Acc:395290]
88. ELOVL4 ENSGALG00000015876 853 0.829 - - - - - - - - 0.829 - ELOVL fatty acid elongase 4 [Source:NCBI gene;Acc:421850]
89. NPAS3 ENSGALG00000029022 1950 0.828 - - - - - 0.828 - - - - neuronal PAS domain protein 3 [Source:HGNC Symbol;Acc:HGNC:19311]
90. LRRN2 ENSGALG00000000639 73 0.827 - - - - - - - - 0.827 - leucine rich repeat neuronal 2 [Source:HGNC Symbol;Acc:HGNC:16914]
91. SLC35F1 ENSGALG00000029011 14728 0.823 - - - - - 0.823 - - - - solute carrier family 35 member F1 [Source:HGNC Symbol;Acc:HGNC:21483]
92. STMN3 ENSGALG00000006130 151 0.821 - - - - - - - - 0.821 - stathmin 3 [Source:NCBI gene;Acc:419263]
93. EN1 ENSGALG00000042389 3051 0.819 - - - - - - - - - 0.819 engrailed homeobox 1 [Source:HGNC Symbol;Acc:HGNC:3342]
94. EML1 1941 0.813 - - - - - - - - - 0.813 echinoderm microtubule associated protein like 1, transcript variant X11
95. SPIRE2 ENSGALG00000000521 26 0.811 - - - - - 0.811 - - - - spire type actin nucleation factor 2 [Source:HGNC Symbol;Acc:HGNC:30623]
96. MURC 3759 0.81 - - - - - - - - - 0.810 muscle related coiled-coil protein
97. TRABD2A ENSGALG00000026395 704 0.81 - - - - - 0.810 - - - - TraB domain containing 2A, transcript variant X3
98. GHOX-7 GHOX-7 2555 0.808 - - - - - 0.808 - - - -
99. MYL4 ENSGALG00000000585 16982 0.807 - - - - - 0.807 - - - - myosin, light chain 4, alkali; atrial, embryonic [Source:NCBI gene;Acc:396472]
100. CLVS2 ENSGALG00000014853 22 0.806 - - - - - - - - - 0.806 clavesin 2 [Source:HGNC Symbol;Acc:HGNC:23046]

There are 151 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA