Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for RTF1

Gene Name Gene ID Reads Annotation
RTF1 ENSGALG00000008595 31933 RTF1 homolog, Paf1/RNA polymerase II complex component [Source:HGNC Symbol;Acc:HGNC:28996]











Genes with expression patterns similar to RTF1

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. RTF1 ENSGALG00000008595 31933 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 RTF1 homolog, Paf1/RNA polymerase II complex component [Source:HGNC Symbol;Acc:HGNC:28996]
2. EEF2 ENSGALG00000033884 62036 1.685 0.723 - - - - - 0.962 - - - eukaryotic translation elongation factor 2 [Source:NCBI gene;Acc:396325]
3. CADM1 ENSGALG00000014582 32973 1.421 - - - - - - - 0.709 0.712 - cell adhesion molecule 1 [Source:HGNC Symbol;Acc:HGNC:5951]
4. MEIS1 ENSGALG00000041626 3865 0.999 - - - - - - 0.999 - - - Meis homeobox 1 [Source:NCBI gene;Acc:395589]
5. AIFM1 ENSGALG00000004003 10451 0.999 - - - - - - 0.999 - - - apoptosis inducing factor mitochondria associated 1 [Source:NCBI gene;Acc:428688]
6. TYW3 ENSGALG00000032549 4869 0.999 - - - - - - 0.999 - - - tRNA-yW synthesizing protein 3 homolog [Source:NCBI gene;Acc:424720]
7. STAM ENSGALG00000035287 7649 0.999 - - - - - - 0.999 - - - signal transducing adaptor molecule [Source:HGNC Symbol;Acc:HGNC:11357]
8. ACADSB ENSGALG00000041417 7710 0.999 - - - - - - 0.999 - - - acyl-CoA dehydrogenase short/branched chain [Source:NCBI gene;Acc:423947]
9. KDM2B ENSGALG00000004225 11513 0.998 - - - - - - 0.998 - - - lysine demethylase 2B [Source:HGNC Symbol;Acc:HGNC:13610]
10. CFC1 ENSGALG00000012623 3164 0.998 - - - - - - 0.998 - - - cripto, FRL-1, cryptic family 1 [Source:NCBI gene;Acc:395437]
11. N6AMT2 N6AMT2 4703 0.998 - - - - - - 0.998 - - -
12. CUX1_1 ENSGALG00000021636 3705 0.998 - - - - - - 0.998 - - - cut like homeobox 1 [Source:NCBI gene;Acc:101749861]
13. COPS5 ENSGALG00000030843 11942 0.998 - - - - - - 0.998 - - - COP9 signalosome subunit 5 [Source:NCBI gene;Acc:426579]
14. NUBP2 ENSGALG00000002316 3643 0.998 - - - - - - 0.998 - - - nucleotide binding protein 2 [Source:NCBI gene;Acc:416402]
15. MYLK ENSGALG00000011708 10434 0.998 - - - - - - 0.998 - - - Gallus gallus myosin light chain kinase (MYLK), transcript variant 1, mRNA. [Source:RefSeq mRNA;Acc:NM_001322361]
16. ATP2B4 ENSGALG00000003601 3746 0.998 - - - - - - 0.998 - - - ATPase plasma membrane Ca2+ transporting 4 [Source:HGNC Symbol;Acc:HGNC:817]
17. ZFAND1 ENSGALG00000042794 2849 0.998 - - - - - - 0.998 - - - zinc finger AN1-type containing 1 [Source:HGNC Symbol;Acc:HGNC:25858]
18. PLEKHH2 ENSGALG00000009947 6384 0.998 - - - - - - 0.998 - - - pleckstrin homology, MyTH4 and FERM domain containing H2 [Source:HGNC Symbol;Acc:HGNC:30506]
19. SEC11C ENSGALG00000031663 4266 0.997 - - - - - - 0.997 - - - SEC11 homolog C, signal peptidase complex subunit [Source:HGNC Symbol;Acc:HGNC:23400]
20. DAP ENSGALG00000013002 6815 0.997 - - - - - - 0.997 - - - death associated protein [Source:NCBI gene;Acc:420923]
21. PRKCI ENSGALG00000009364 11574 0.995 - - - - - - 0.995 - - - protein kinase C iota [Source:NCBI gene;Acc:424991]
22. MPHOSPH6 ENSGALG00000031983 17073 0.995 - - - - - - 0.995 - - - M-phase phosphoprotein 6 [Source:NCBI gene;Acc:415811]
23. EIF3H ENSGALG00000040522 39919 0.994 - - - - - - 0.994 - - - eukaryotic translation initiation factor 3 subunit H [Source:NCBI gene;Acc:420288]
24. KIAA1143 ENSGALG00000035952 6735 0.991 - - - - - - 0.991 - - - KIAA1143 [Source:NCBI gene;Acc:420709]
25. MYH10 ENSGALG00000001183 26889 0.991 - - - - - - 0.991 - - - myosin, heavy chain 10, non-muscle [Source:NCBI gene;Acc:396465]
26. TTR ENSGALG00000015143 9764 0.991 - - - - - - 0.991 - - - transthyretin [Source:NCBI gene;Acc:396277]
27. S100A11 ENSGALG00000036711 23454 0.986 - - - - - - 0.986 - - - S100 calcium binding protein A11 [Source:NCBI gene;Acc:396075]
28. YWHAH ENSGALG00000006743 29828 0.979 - - - - - - 0.979 - - - tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein eta [Source:NCBI gene;Acc:416955]
29. HP1BP3 ENSGALG00000010079 33723 0.976 - - - - - - 0.976 - - - heterochromatin protein 1 binding protein 3 [Source:NCBI gene;Acc:425543]
30. RPL23A ENSGALG00000003966 369097 0.973 - - - - - - 0.973 - - - ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
31. CCNB2 ENSGALG00000004161 50324 0.972 - - - - - - 0.972 - - - cyclin B2 [Source:NCBI gene;Acc:415400]
32. RPL30 ENSGALG00000029897 58241 0.961 - - - - - - 0.961 - - - ribosomal protein L30 [Source:NCBI gene;Acc:425416]
33. PHB2 ENSGALG00000014567 104774 0.946 - - - - - - 0.946 - - - prohibitin 2 [Source:NCBI gene;Acc:771124]
34. NDUFA5 ENSGALG00000008821 22926 0.941 - - - - - - 0.941 - - - NADH:ubiquinone oxidoreductase subunit A5 [Source:NCBI gene;Acc:417753]
35. UBB ENSGALG00000004509 139598 0.92 - - - - - - 0.920 - - - Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
36. CHCHD2 ENSGALG00000002495 99536 0.919 - - - - - - 0.919 - - - coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:NCBI gene;Acc:417544]
37. RGP1 ENSGALG00000002394 5937 0.894 - - - - - - 0.894 - - - RGP1 homolog, RAB6A GEF complex partner 1 [Source:NCBI gene;Acc:431658]
38. RBX1 ENSGALG00000011993 26090 0.89 - - - - - - 0.890 - - - ring-box 1 [Source:NCBI gene;Acc:418001]
39. MAPK6 ENSGALG00000031448 28384 0.887 - - - - - - 0.887 - - - mitogen-activated protein kinase 6 [Source:NCBI gene;Acc:415419]
40. HNRNPAB ENSGALG00000014381 41009 0.887 - - - - - - 0.887 - - - heterogeneous nuclear ribonucleoprotein A/B [Source:NCBI gene;Acc:396268]
41. MRPS34 ENSGALG00000001792 14262 0.862 - - - - - - - 0.862 - - mitochondrial ribosomal protein S34 [Source:NCBI gene;Acc:426987]
42. ALCAM ENSGALG00000015348 14283 0.848 - - - - - - - 0.848 - - activated leukocyte cell adhesion molecule [Source:NCBI gene;Acc:396092]
43. HSP90AA1 ENSGALG00000033212 55740 0.845 - - - - - - 0.845 - - - heat shock protein 90 alpha family class A member 1 [Source:NCBI gene;Acc:423463]
44. THOC2 ENSGALG00000008507 9501 0.823 0.823 - - - - - - - - - THO complex 2 [Source:HGNC Symbol;Acc:HGNC:19073]
45. ULK2 ENSGALG00000004727 10729 0.821 - - - - - - - 0.821 - - unc-51 like autophagy activating kinase 2 [Source:HGNC Symbol;Acc:HGNC:13480]
46. LY6E ENSGALG00000041621 16227 0.815 - - - - - - - 0.815 - - lymphocyte antigen 6 family member E [Source:NCBI gene;Acc:395550]
47. ARPC2 ENSGALG00000011452 7338 0.812 - - - - - - - 0.812 - - actin related protein 2/3 complex subunit 2 [Source:HGNC Symbol;Acc:HGNC:705]
48. ZNF644 ENSGALG00000034253 28348 0.807 0.807 - - - - - - - - - zinc finger protein 644 [Source:HGNC Symbol;Acc:HGNC:29222]
49. PUM2 ENSGALG00000016481 23625 0.803 - - - - - - 0.803 - - - pumilio RNA binding family member 2 [Source:NCBI gene;Acc:421961]
50. ATRX ENSGALG00000007843 34172 0.802 0.802 - - - - - - - - - ATRX, chromatin remodeler [Source:HGNC Symbol;Acc:HGNC:886]
51. RBBP6 ENSGALG00000006043 9708 0.802 0.802 - - - - - - - - - RB binding protein 6, ubiquitin ligase [Source:HGNC Symbol;Acc:HGNC:9889]
52. DNAJC10 ENSGALG00000008862 3114 0.796 0.796 - - - - - - - - - DnaJ heat shock protein family (Hsp40) member C10 [Source:HGNC Symbol;Acc:HGNC:24637]
53. PSMD1 ENSGALG00000007664 7609 0.791 0.791 - - - - - - - - - proteasome 26S subunit, non-ATPase 1 [Source:NCBI gene;Acc:424926]
54. GFOD2 ENSGALG00000001201 5242 0.786 - - - - - - - 0.786 - - glucose-fructose oxidoreductase domain containing 2 [Source:NCBI gene;Acc:415642]
55. EIF5B ENSGALG00000016764 30681 0.783 0.783 - - - - - - - - - eukaryotic translation initiation factor 5B [Source:NCBI gene;Acc:395514]
56. SRSF11 ENSGALG00000011305 10435 0.782 0.782 - - - - - - - - - serine and arginine rich splicing factor 11 [Source:NCBI gene;Acc:424714]
57. ETV5 ENSGALG00000005768 9679 0.782 - - - - - - - 0.782 - - ETS variant 5 [Source:NCBI gene;Acc:395749]
58. ANKRD11 ENSGALG00000006222 12327 0.779 0.779 - - - - - - - - - ankyrin repeat domain 11, transcript variant X2
59. NUCKS1 ENSGALG00000000708 80882 0.778 0.778 - - - - - - - - - nuclear casein kinase and cyclin dependent kinase substrate 1 [Source:NCBI gene;Acc:404775]
60. COX16 ENSGALG00000020449 5959 0.775 - - - - - - - 0.775 - - cytochrome c oxidase assembly factor COX16 [Source:NCBI gene;Acc:423257]
61. HMGN5 ENSGALG00000007131 171006 0.774 0.774 - - - - - - - - - high mobility group nucleosome binding domain 5, transcript variant X1
62. SP3 ENSGALG00000031796 8997 0.77 0.770 - - - - - - - - - Sp3 transcription factor [Source:NCBI gene;Acc:395302]
63. MAP1B ENSGALG00000014999 6288 0.767 0.767 - - - - - - - - - microtubule associated protein 1B
64. PTGFRN ENSGALG00000015464 14584 0.766 0.766 - - - - - - - - - prostaglandin F2 receptor inhibitor [Source:HGNC Symbol;Acc:HGNC:9601]
65. DERL2 ENSGALG00000041844 4509 0.765 - - - - - - - 0.765 - - derlin 2 [Source:HGNC Symbol;Acc:HGNC:17943]
66. DDX46 ENSGALG00000006404 8765 0.759 0.759 - - - - - - - - - DEAD-box helicase 46 [Source:HGNC Symbol;Acc:HGNC:18681]
67. RDM1 ENSGALG00000000243 3388 0.756 - - - - - - - - 0.756 - RAD52 motif containing 1 [Source:NCBI gene;Acc:395228]
68. SURF6 ENSGALG00000038413 11178 0.753 0.753 - - - - - - - - - surfeit 6 [Source:NCBI gene;Acc:417160]
69. XRN2 ENSGALG00000008372 22164 0.753 - - - - - - - 0.753 - - 5'-3' exoribonuclease 2 [Source:NCBI gene;Acc:421236]
70. CAPZA1 ENSGALG00000001547 24242 0.753 0.753 - - - - - - - - - capping actin protein of muscle Z-line alpha subunit 1 [Source:NCBI gene;Acc:396521]
71. HMGB1 ENSGALG00000042875 83509 0.752 0.752 - - - - - - - - - high mobility group box 1 [Source:NCBI gene;Acc:395724]
72. PUM1 ENSGALG00000042598 9392 0.747 0.747 - - - - - - - - - pumilio RNA binding family member 1 [Source:NCBI gene;Acc:419554]
73. USP10 ENSGALG00000005674 7768 0.743 0.743 - - - - - - - - - ubiquitin specific peptidase 10 [Source:NCBI gene;Acc:415817]
74. NAP1L1 ENSGALG00000010238 14506 0.742 0.742 - - - - - - - - - nucleosome assembly protein 1 like 1 [Source:HGNC Symbol;Acc:HGNC:7637]
75. RALBP1 ENSGALG00000008405 13780 0.742 - - - - - - - - 0.742 - ralA binding protein 1 [Source:NCBI gene;Acc:429466]
76. VCAN ENSGALG00000015624 11489 0.739 0.739 - - - - - - - - - versican [Source:NCBI gene;Acc:395565]
77. PARP1 ENSGALG00000009228 39433 0.739 0.739 - - - - - - - - - poly (ADP-ribose) polymerase 1 [Source:NCBI gene;Acc:396199]
78. MDN1 ENSGALG00000015733 2352 0.739 - - 0.739 - - - - - - - midasin AAA ATPase 1, transcript variant X1
79. GALNT7 ENSGALG00000010744 8645 0.737 0.737 - - - - - - - - - polypeptide N-acetylgalactosaminyltransferase 7 [Source:HGNC Symbol;Acc:HGNC:4129]
80. ESF1 ENSGALG00000034768 8610 0.734 0.734 - - - - - - - - - ESF1 nucleolar pre-rRNA processing protein homolog [Source:NCBI gene;Acc:428551]
81. PSMA7 ENSGALG00000030411 42436 0.734 0.734 - - - - - - - - - proteasome subunit alpha 7 [Source:NCBI gene;Acc:395318]
82. PPIG ENSGALG00000009839 24114 0.732 0.732 - - - - - - - - - peptidylprolyl isomerase G [Source:HGNC Symbol;Acc:HGNC:14650]
83. SEPT9 ENSGALG00000040244 6570 0.731 0.731 - - - - - - - - - septin 9 [Source:NCBI gene;Acc:417347]
84. ZCCHC17 ENSGALG00000000618 5163 0.731 - - - - - - - - 0.731 - zinc finger CCHC-type containing 17 [Source:NCBI gene;Acc:404295]
85. RDX ENSGALG00000017153 6734 0.729 0.729 - - - - - - - - - radixin [Source:NCBI gene;Acc:395511]
86. APP ENSGALG00000015770 9438 0.729 0.729 - - - - - - - - - amyloid beta (A4) precursor protein [Source:NCBI gene;Acc:374198]
87. WBSCR27 3511 0.728 - - - - - - - - 0.728 - Williams Beuren syndrome chromosome region 27
88. CTBPL ENSGALG00000007642 14238 0.727 - - - - - - - - 0.727 - C-terminal binding protein-like [Source:NCBI gene;Acc:416354]
89. H3-IX_1 H3-IX_1 54392 0.727 0.727 - - - - - - - - -
90. GLG1 ENSGALG00000039818 6221 0.727 0.727 - - - - - - - - - golgi glycoprotein 1 [Source:NCBI gene;Acc:396492]
91. EIF4G3 ENSGALG00000010084 5881 0.725 0.725 - - - - - - - - - eukaryotic translation initiation factor 4 gamma 3 [Source:HGNC Symbol;Acc:HGNC:3298]
92. RAB1A ENSGALG00000031582 6929 0.724 0.724 - - - - - - - - - RAB1A, member RAS oncogene family [Source:NCBI gene;Acc:421273]
93. CDC42SE1 ENSGALG00000028119 14813 0.723 - - - - - - - 0.723 - - CDC42 small effector 1 [Source:HGNC Symbol;Acc:HGNC:17719]
94. PEX3 ENSGALG00000013777 3158 0.715 - - - - - - - - 0.715 - peroxisomal biogenesis factor 3
95. TOP2A ENSGALG00000003922 7726 0.715 0.715 - - - - - - - - - topoisomerase (DNA) II alpha [Source:NCBI gene;Acc:395570]
96. KNOP1 ENSGALG00000002042 6251 0.714 0.714 - - - - - - - - - lysine-rich nucleolar protein 1, transcript variant X1
97. ARID4A ENSGALG00000012037 8554 0.713 0.713 - - - - - - - - - AT-rich interaction domain 4A [Source:NCBI gene;Acc:423541]
98. NHP2L1 NHP2L1 12124 0.713 0.713 - - - - - - - - -
99. SMAP1 ENSGALG00000015959 4665 0.713 - - 0.713 - - - - - - - small ArfGAP 1 [Source:HGNC Symbol;Acc:HGNC:19651]
100. SERBP1 ENSGALG00000011229 30489 0.712 0.712 - - - - - - - - - SERPINE1 mRNA binding protein 1 [Source:NCBI gene;Acc:424706]

There are 23 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA