Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for RTCB

Gene Name Gene ID Reads Annotation
RTCB ENSGALG00000012611 14360 RNA 2',3'-cyclic phosphate and 5'-OH ligase [Source:HGNC Symbol;Acc:HGNC:26935]











Genes with expression patterns similar to RTCB

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. RTCB ENSGALG00000012611 14360 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 RNA 2',3'-cyclic phosphate and 5'-OH ligase [Source:HGNC Symbol;Acc:HGNC:26935]
2. CDC45 ENSGALG00000001616 8432 1.57 - - - - - - 0.792 0.778 - - cell division cycle 45 [Source:HGNC Symbol;Acc:HGNC:1739]
3. AP4E1 2726 1.545 - - - - - - 0.745 - 0.800 - adaptor related protein complex 4 epsilon 1 subunit, transcript variant X2
4. VATB VATB 13756 1.525 - - - - - - 0.736 0.789 - -
5. TLK2 ENSGALG00000000410 4690 1.515 - - - - - - 0.713 0.802 - - tousled like kinase 2 [Source:HGNC Symbol;Acc:HGNC:11842]
6. KBTBD2 ENSGALG00000038704 2821 1.51 - - - - - - 0.725 0.785 - - kelch repeat and BTB domain containing 2 [Source:HGNC Symbol;Acc:HGNC:21751]
7. TMEM30A ENSGALG00000015904 8533 1.501 - - - - - - 0.789 0.712 - - transmembrane protein 30A [Source:NCBI gene;Acc:421861]
8. ENSGALG00000004132 ENSGALG00000004132 9287 1.501 - - - - - - 0.725 0.776 - -
9. ARL4A ENSGALG00000027757 4285 1.493 - - - - - - 0.703 0.790 - - ADP ribosylation factor like GTPase 4A [Source:HGNC Symbol;Acc:HGNC:695]
10. MZT1 ENSGALG00000016932 9269 1.476 - - - - - - 0.733 0.743 - - mitotic spindle organizing protein 1 [Source:NCBI gene;Acc:418822]
11. TAF7 4725 1.466 - - - - - - 0.766 - - 0.700 TATA-box binding protein associated factor 7, transcript variant X1
12. VPS35 ENSGALG00000004375 8059 1.451 - - - - - - - 0.715 0.736 - VPS35, retromer complex component [Source:NCBI gene;Acc:415750]
13. SIAH2 ENSGALG00000010395 2126 1.439 - - - - - - 0.730 - - 0.709 siah E3 ubiquitin protein ligase 2 [Source:HGNC Symbol;Acc:HGNC:10858]
14. DYNC2H1 ENSGALG00000041814 1770 1.42 - - - - - - 0.719 - 0.701 - dynein cytoplasmic 2 heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:2962]
15. CCT5 ENSGALG00000013041 56190 0.897 - - - - - - - 0.897 - - chaperonin containing TCP1 subunit 5 [Source:NCBI gene;Acc:420930]
16. ANAPC1 ENSGALG00000008254 2519 0.891 - - - - - - 0.891 - - - anaphase promoting complex subunit 1 [Source:HGNC Symbol;Acc:HGNC:19988]
17. PTTG1 17936 0.888 - - - - - - 0.888 - - - pituitary tumor-transforming 1, transcript variant X1
18. CLNS1A ENSGALG00000008574 25675 0.883 - - - - - - 0.883 - - - chloride nucleotide-sensitive channel 1A [Source:HGNC Symbol;Acc:HGNC:2080]
19. RAB11A ENSGALG00000007615 9154 0.877 - - - - - - 0.877 - - - RAB11A, member RAS oncogene family [Source:NCBI gene;Acc:415544]
20. DCAF7 ENSGALG00000000510 8681 0.871 - - - - - - 0.871 - - - DDB1 and CUL4 associated factor 7 [Source:NCBI gene;Acc:771554]
21. NASP ENSGALG00000010255 28423 0.869 - - - - - - 0.869 - - - nuclear autoantigenic sperm protein, transcript variant X3
22. SNRNP27 ENSGALG00000013883 22212 0.866 - - - - - - 0.866 - - - small nuclear ribonucleoprotein U4/U6.U5 subunit 27 [Source:HGNC Symbol;Acc:HGNC:30240]
23. TOR1AIP1 ENSGALG00000029238 5843 0.863 - - - - - - 0.863 - - - torsin 1A interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:29456]
24. GMPPB ENSGALG00000002500 9454 0.861 - - - - - - 0.861 - - - GDP-mannose pyrophosphorylase B [Source:NCBI gene;Acc:415924]
25. OSTC ENSGALG00000010526 19422 0.858 - - - - - - 0.858 - - - oligosaccharyltransferase complex non-catalytic subunit [Source:NCBI gene;Acc:422525]
26. FAM160B1 ENSGALG00000031404 3153 0.852 - - - - - - 0.852 - - - family with sequence similarity 160 member B1 [Source:HGNC Symbol;Acc:HGNC:29320]
27. SDHD ENSGALG00000007878 25129 0.852 - - - - - - 0.852 - - - succinate dehydrogenase complex subunit D [Source:NCBI gene;Acc:419793]
28. XRCC5 ENSGALG00000011492 6802 0.852 - - - - - - 0.852 - - - X-ray repair cross complementing 5 [Source:HGNC Symbol;Acc:HGNC:12833]
29. WDR45B ENSGALG00000001563 5870 0.851 - - - - - - 0.851 - - - WD repeat domain 45B [Source:NCBI gene;Acc:417339]
30. HOXA3 ENSGALG00000027925 4287 0.85 - - - - - - 0.850 - - - homeobox A3 [Source:HGNC Symbol;Acc:HGNC:5104]
31. LLPH ENSGALG00000019358 20976 0.85 - - - - - - 0.850 - - - LLP homolog, long-term synaptic facilitation [Source:NCBI gene;Acc:771027]
32. RRP1B ENSGALG00000035696 12309 0.85 - - - - - - 0.850 - - - ribosomal RNA processing 1B [Source:NCBI gene;Acc:425237]
33. R3HDM1 ENSGALG00000012246 6580 0.849 - - - - - - 0.849 - - - R3H domain containing 1 [Source:HGNC Symbol;Acc:HGNC:9757]
34. FAM63B 3793 0.847 - - - - - - 0.847 - - - family with sequence similarity 63 member B
35. TMEM167A ENSGALG00000027332 13862 0.847 - - - - - - 0.847 - - - transmembrane protein 167A [Source:NCBI gene;Acc:770790]
36. EGLN1 ENSGALG00000041422 11032 0.846 - - - - - - 0.846 - - - egl-9 family hypoxia inducible factor 1 [Source:HGNC Symbol;Acc:HGNC:1232]
37. RABGGTB ENSGALG00000011388 11654 0.845 - - - - - - 0.845 - - - Rab geranylgeranyltransferase subunit beta [Source:HGNC Symbol;Acc:HGNC:9796]
38. CHTF8 ENSGALG00000000632 7230 0.844 - - - - - - 0.844 - - - chromosome transmission fidelity factor 8 [Source:NCBI gene;Acc:769609]
39. ARF4 ENSGALG00000005622 50567 0.844 - - - - - - - - 0.844 - ADP ribosylation factor 4 [Source:HGNC Symbol;Acc:HGNC:655]
40. PIGA ENSGALG00000016559 5010 0.842 - - - - - - 0.842 - - - phosphatidylinositol glycan anchor biosynthesis class A [Source:NCBI gene;Acc:418624]
41. KIAA0020 KIAA0020 14353 0.842 - - - - - - 0.842 - - -
42. METTL14 ENSGALG00000012000 5876 0.842 - - - - - - 0.842 - - - methyltransferase like 14 [Source:NCBI gene;Acc:422684]
43. TMX3 ENSGALG00000013757 6387 0.841 - - - - - - 0.841 - - - Gallus gallus thioredoxin related transmembrane protein 3 (TMX3), transcript variant 1, mRNA. [Source:RefSeq mRNA;Acc:NM_001321606]
44. OCIAD1 ENSGALG00000014081 12065 0.839 - - - - - - 0.839 - - - OCIA domain containing 1 [Source:HGNC Symbol;Acc:HGNC:16074]
45. TFDP1 ENSGALG00000016823 17019 0.839 - - - - - - 0.839 - - - transcription factor Dp-1 [Source:HGNC Symbol;Acc:HGNC:11749]
46. SMC4 ENSGALG00000009553 15715 0.837 - - - - - - 0.837 - - - structural maintenance of chromosomes 4 [Source:NCBI gene;Acc:395189]
47. RSL1D1 ENSGALG00000033690 13638 0.837 - - - - - - 0.837 - - - ribosomal L1 domain containing 1 [Source:NCBI gene;Acc:416416]
48. TTC37 ENSGALG00000014670 5715 0.836 - - - - - - 0.836 - - - tetratricopeptide repeat domain 37 [Source:HGNC Symbol;Acc:HGNC:23639]
49. CCNH ENSGALG00000015641 8051 0.835 - - - - - - 0.835 - - - cyclin H [Source:HGNC Symbol;Acc:HGNC:1594]
50. BIRC6 ENSGALG00000010541 7999 0.834 - - - - - - 0.834 - - - baculoviral IAP repeat containing 6 [Source:HGNC Symbol;Acc:HGNC:13516]
51. FAM98A ENSGALG00000010428 9585 0.832 - - - - - - 0.832 - - - family with sequence similarity 98 member A [Source:NCBI gene;Acc:421458]
52. SP3 ENSGALG00000031796 8997 0.831 - - - - - - 0.831 - - - Sp3 transcription factor [Source:NCBI gene;Acc:395302]
53. MRPL50 ENSGALG00000015543 11649 0.83 - - - - - - 0.830 - - - mitochondrial ribosomal protein L50 [Source:NCBI gene;Acc:427307]
54. TXNL1 ENSGALG00000033862 13899 0.83 - - - - - - 0.830 - - - thioredoxin like 1 [Source:HGNC Symbol;Acc:HGNC:12436]
55. NUP54 ENSGALG00000011506 4945 0.83 - - - - - - 0.830 - - - nucleoporin 54 [Source:HGNC Symbol;Acc:HGNC:17359]
56. LIMD2 ENSGALG00000000529 30617 0.83 - - - - - - 0.830 - - - LIM domain containing 2 [Source:NCBI gene;Acc:419955]
57. MRPL40 ENSGALG00000001587 20893 0.828 - - - - - - 0.828 - - - mitochondrial ribosomal protein L40 [Source:HGNC Symbol;Acc:HGNC:14491]
58. COMMD10 ENSGALG00000002308 7442 0.828 - - - - - - 0.828 - - - COMM domain containing 10 [Source:NCBI gene;Acc:427388]
59. HARS ENSGALG00000035080 11602 0.828 - - - - - - 0.828 - - - histidyl-tRNA synthetase [Source:NCBI gene;Acc:416132]
60. gga-mir-1306 ENSGALG00000025271 1231 0.828 - - - - - - - - 0.828 - gga-mir-1306 [Source:miRBase;Acc:MI0007057]
61. DLD ENSGALG00000007931 11011 0.828 - - - - - - 0.828 - - - dihydrolipoamide dehydrogenase [Source:NCBI gene;Acc:417699]
62. NDUFC2 ENSGALG00000029172 26136 0.828 - - - - - - 0.828 - - - NADH:ubiquinone oxidoreductase subunit C2 [Source:NCBI gene;Acc:404751]
63. IGF2BP1 ENSGALG00000041204 6420 0.827 - - - - - - - 0.827 - - insulin like growth factor 2 mRNA binding protein 1 [Source:NCBI gene;Acc:395953]
64. MRPL53 ENSGALG00000037867 6100 0.825 - - - - - - 0.825 - - - mitochondrial ribosomal protein L53 [Source:NCBI gene;Acc:420196]
65. TMEM184C ENSGALG00000010019 7856 0.825 - - - - - - 0.825 - - - transmembrane protein 184C [Source:NCBI gene;Acc:422469]
66. CASP3 ENSGALG00000010638 11572 0.825 - - - - - - 0.825 - - - caspase 3 [Source:NCBI gene;Acc:395476]
67. SALL4 ENSGALG00000041365 6760 0.824 - - - - - - 0.824 - - - spalt like transcription factor 4 [Source:NCBI gene;Acc:769286]
68. DSP ENSGALG00000012790 17884 0.824 - - - - - - - - 0.824 - desmoplakin [Source:HGNC Symbol;Acc:HGNC:3052]
69. MRGBP ENSGALG00000005531 79 0.823 - - - - - - - - 0.823 - MRG domain binding protein [Source:HGNC Symbol;Acc:HGNC:15866]
70. FCF1 ENSGALG00000010275 24928 0.822 - - - - - - 0.822 - - - FCF1, rRNA-processing protein [Source:HGNC Symbol;Acc:HGNC:20220]
71. DNAL4 ENSGALG00000043451 4469 0.822 - - - - - - 0.822 - - - dynein axonemal light chain 4 [Source:NCBI gene;Acc:418019]
72. C12ORF57 C12ORF57 25906 0.821 - - - - - - 0.821 - - -
73. HSPA4 ENSGALG00000040882 20966 0.82 - - - - - - 0.820 - - - heat shock protein family A (Hsp70) member 4 [Source:HGNC Symbol;Acc:HGNC:5237]
74. RPS28 ENSGALG00000024398 244056 0.82 - - - - - - 0.820 - - - ribosomal protein S28 [Source:NCBI gene;Acc:768930]
75. PAN3 ENSGALG00000017092 5387 0.819 - - - - - - 0.819 - - - poly(A) specific ribonuclease subunit PAN3 [Source:HGNC Symbol;Acc:HGNC:29991]
76. GPC4 ENSGALG00000006080 56498 0.819 - - - - - - 0.819 - - - glypican 4 [Source:HGNC Symbol;Acc:HGNC:4452]
77. KLC1 ENSGALG00000011528 1621 0.819 - - - - - - - - 0.819 - kinesin light chain 1, transcript variant X6
78. MRPL20 ENSGALG00000001542 28764 0.819 - - - - - - 0.819 - - - mitochondrial ribosomal protein L20 [Source:NCBI gene;Acc:770979]
79. SNORD38 SNORD38 537 0.818 - - - - - - - - 0.818 -
80. ST5 6869 0.818 - - - - - - 0.818 - - - suppression of tumorigenicity 5, transcript variant X1
81. LAPTM4A ENSGALG00000016479 15973 0.818 - - - - - - 0.818 - - - lysosomal protein transmembrane 4 alpha [Source:NCBI gene;Acc:421959]
82. ZNF593 ENSGALG00000000542 79105 0.818 - - - - - - 0.818 - - - zinc finger protein 593 [Source:NCBI gene;Acc:419549]
83. EIF3B ENSGALG00000040999 49971 0.818 - - - - - - 0.818 - - - eukaryotic translation initiation factor 3 subunit B [Source:HGNC Symbol;Acc:HGNC:3280]
84. GMPS ENSGALG00000010284 8765 0.818 - - - - - - - - 0.818 - guanine monophosphate synthase [Source:NCBI gene;Acc:425028]
85. TTLL12 ENSGALG00000014167 714 0.817 - - - - - - - - 0.817 - tubulin tyrosine ligase like 12 [Source:NCBI gene;Acc:418227]
86. MYO1B ENSGALG00000007712 8755 0.817 - - - - - - - 0.817 - - myosin IB [Source:HGNC Symbol;Acc:HGNC:7596]
87. MAK16 ENSGALG00000001663 7455 0.817 - - - - - - 0.817 - - - MAK16 homolog [Source:HGNC Symbol;Acc:HGNC:13703]
88. UBE2B ENSGALG00000032664 6069 0.816 - - - - - - 0.816 - - - ubiquitin conjugating enzyme E2 B [Source:HGNC Symbol;Acc:HGNC:12473]
89. DNM1L ENSGALG00000012929 6174 0.816 - - - - - - 0.816 - - - dynamin 1 like [Source:NCBI gene;Acc:418132]
90. CYC CYC 8740 0.816 - - - - - - 0.816 - - -
91. GTLF3B GTLF3B 5079 0.816 - - - - - - 0.816 - - -
92. PREP ENSGALG00000015405 17050 0.816 - - - - - - 0.816 - - - prolyl endopeptidase [Source:NCBI gene;Acc:421785]
93. INCENP ENSGALG00000007537 16617 0.816 - - - - - - 0.816 - - - inner centromere protein [Source:NCBI gene;Acc:396270]
94. PSMB2 ENSGALG00000026421 51885 0.815 - - - - - - 0.815 - - - proteasome subunit beta 2 [Source:HGNC Symbol;Acc:HGNC:9539]
95. FANCL ENSGALG00000030022 7423 0.815 - - - - - - 0.815 - - - FA complementation group L [Source:NCBI gene;Acc:421202]
96. EIF2B3 ENSGALG00000010140 7992 0.814 - - - - - - 0.814 - - - eukaryotic translation initiation factor 2B subunit gamma [Source:NCBI gene;Acc:424587]
97. NCDN ENSGALG00000002408 6180 0.813 - - - - - - 0.813 - - - neurochondrin [Source:NCBI gene;Acc:419633]
98. NARG2 NARG2 2294 0.813 - - - - - - 0.813 - - -
99. TERF2 ENSGALG00000000657 7865 0.813 - - - - - - 0.813 - - - telomeric repeat binding factor 2 [Source:NCBI gene;Acc:395598]
100. BCAP29 ENSGALG00000008009 8519 0.813 - - - - - - 0.813 - - - B cell receptor associated protein 29 [Source:NCBI gene;Acc:417702]

There are 659 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA