Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for RRP9

Gene Name Gene ID Reads Annotation
RRP9 ENSGALG00000043359 9747 ribosomal RNA processing 9, U3 small nucleolar RNA binding protein [Source:HGNC Symbol;Acc:HGNC:16829]











Genes with expression patterns similar to RRP9

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. RRP9 ENSGALG00000043359 9747 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 ribosomal RNA processing 9, U3 small nucleolar RNA binding protein [Source:HGNC Symbol;Acc:HGNC:16829]
2. CPSF6 ENSGALG00000019355 7634 1.721 - - - - - - 0.905 0.816 - - cleavage and polyadenylation specific factor 6 [Source:NCBI gene;Acc:417844]
3. MRPS18A ENSGALG00000010296 11039 1.681 - - - - - - 0.844 0.837 - - mitochondrial ribosomal protein S18A [Source:NCBI gene;Acc:421445]
4. PUM1 ENSGALG00000042598 9392 1.642 - - - - - - 0.777 0.865 - - pumilio RNA binding family member 1 [Source:NCBI gene;Acc:419554]
5. SSR3 ENSGALG00000028683 24334 1.639 - - - - - - 0.824 0.815 - - signal sequence receptor subunit 3 [Source:NCBI gene;Acc:425027]
6. MCTS1 ENSGALG00000008517 27514 1.615 - - - - - - 0.909 0.706 - - MCTS1, re-initiation and release factor [Source:NCBI gene;Acc:422363]
7. MZT1 ENSGALG00000016932 9269 1.596 - - - - - - 0.728 0.868 - - mitotic spindle organizing protein 1 [Source:NCBI gene;Acc:418822]
8. VIMENTIN VIMENTIN 33105 1.588 - - - - - - 0.718 0.870 - -
9. CDC45 ENSGALG00000001616 8432 1.585 - - - - - - 0.740 0.845 - - cell division cycle 45 [Source:HGNC Symbol;Acc:HGNC:1739]
10. TCTN3 ENSGALG00000010517 3985 1.579 - - - - - - 0.711 0.868 - - tectonic family member 3 [Source:NCBI gene;Acc:100857412]
11. VPS35 ENSGALG00000004375 8059 1.55 - - - - - - 0.783 0.767 - - VPS35, retromer complex component [Source:NCBI gene;Acc:415750]
12. SAFB2 ENSGALG00000001948 10238 1.442 - - - - - 0.730 0.712 - - - scaffold attachment factor B2, transcript variant X6
13. IGF2BP1 ENSGALG00000041204 6420 0.951 - - - - - - - 0.951 - - insulin like growth factor 2 mRNA binding protein 1 [Source:NCBI gene;Acc:395953]
14. MYO1B ENSGALG00000007712 8755 0.918 - - - - - - - 0.918 - - myosin IB [Source:HGNC Symbol;Acc:HGNC:7596]
15. TOMM20 ENSGALG00000035299 23431 0.896 - - - - - - 0.896 - - - translocase of outer mitochondrial membrane 20 [Source:HGNC Symbol;Acc:HGNC:20947]
16. SRSF6 ENSGALG00000000990 12424 0.885 - - - - - - 0.885 - - - serine and arginine rich splicing factor 6 [Source:NCBI gene;Acc:419116]
17. TPD52L2 ENSGALG00000004683 13624 0.884 - - - - - - 0.884 - - - tumor protein D52 like 2 [Source:NCBI gene;Acc:419257]
18. NXN 20202 0.881 - - - - - - 0.881 - - - nucleoredoxin, transcript variant X1
19. CASP3 ENSGALG00000010638 11572 0.88 - - - - - - 0.880 - - - caspase 3 [Source:NCBI gene;Acc:395476]
20. UQCRC1 ENSGALG00000005789 23201 0.879 - - - - - - 0.879 - - - ubiquinol-cytochrome c reductase core protein 1 [Source:HGNC Symbol;Acc:HGNC:12585]
21. SBNO1 ENSGALG00000003392 6731 0.879 - - - - - - 0.879 - - - strawberry notch homolog 1 [Source:NCBI gene;Acc:427694]
22. PRCC ENSGALG00000040696 9346 0.879 - - - - - - 0.879 - - - proline rich mitotic checkpoint control factor [Source:HGNC Symbol;Acc:HGNC:9343]
23. MRPL54 ENSGALG00000027611 39450 0.877 - - - - - - 0.877 - - - mitochondrial ribosomal protein L54 [Source:HGNC Symbol;Acc:HGNC:16685]
24. WDR61 ENSGALG00000003221 11352 0.877 - - - - - - 0.877 - - - WD repeat domain 61 [Source:NCBI gene;Acc:415359]
25. CENPH ENSGALG00000014788 10601 0.874 - - - - - - 0.874 - - - centromere protein H [Source:NCBI gene;Acc:395316]
26. TLK1 ENSGALG00000009569 5446 0.874 - - - - - - 0.874 - - - tousled like kinase 1 [Source:HGNC Symbol;Acc:HGNC:11841]
27. KCTD10 ENSGALG00000005138 1191 0.872 - - - - - - - 0.872 - - potassium channel tetramerization domain containing 10 [Source:HGNC Symbol;Acc:HGNC:23236]
28. KCNE3 ENSGALG00000022696 561 0.872 - - - - - - - 0.872 - - potassium voltage-gated channel subfamily E regulatory subunit 3 [Source:HGNC Symbol;Acc:HGNC:6243]
29. PPP1R21 ENSGALG00000008937 2343 0.872 - - - - - - - 0.872 - - protein phosphatase 1 regulatory subunit 21 [Source:NCBI gene;Acc:421287]
30. PDCD2 ENSGALG00000011169 3594 0.872 - - - - - - - 0.872 - - programmed cell death 2 [Source:NCBI gene;Acc:421550]
31. PPP2R3C ENSGALG00000010052 637 0.872 - - - - - - - 0.872 - - protein phosphatase 2 regulatory subunit B''gamma [Source:HGNC Symbol;Acc:HGNC:17485]
32. KIAA1598 KIAA1598 989 0.872 - - - - - - - 0.872 - -
33. SLC2A10 ENSGALG00000004498 421 0.872 - - - - - - - 0.872 - - solute carrier family 2 member 10 [Source:HGNC Symbol;Acc:HGNC:13444]
34. SLC25A15 ENSGALG00000017032 6773 0.872 - - - - - - - 0.872 - - solute carrier family 25 member 15 [Source:NCBI gene;Acc:418886]
35. PKIB ENSGALG00000027036 1663 0.872 - - - - - - - 0.872 - - protein kinase (cAMP-dependent, catalytic) inhibitor beta [Source:NCBI gene;Acc:769402]
36. PLA2R1 ENSGALG00000011149 1964 0.871 - - - - - - - 0.871 - - phospholipase A2 receptor 1 [Source:NCBI gene;Acc:404304]
37. KIAA1324L ENSGALG00000030324 1695 0.871 - - - - - - - 0.871 - - KIAA1324 like [Source:HGNC Symbol;Acc:HGNC:21945]
38. EXOC4 ENSGALG00000008477 4684 0.871 - - - - - - - 0.871 - - exocyst complex component 4 [Source:NCBI gene;Acc:416700]
39. CHMP5 ENSGALG00000013160 13347 0.871 - - - - - - 0.871 - - - charged multivesicular body protein 5 [Source:NCBI gene;Acc:420968]
40. SLC35E1 ENSGALG00000003794 2563 0.871 - - - - - - - 0.871 - - solute carrier family 35 member E1 [Source:HGNC Symbol;Acc:HGNC:20803]
41. PRKRIP1 ENSGALG00000001833 5092 0.87 - - - - - - - 0.870 - - PRKR interacting protein 1 [Source:NCBI gene;Acc:417508]
42. URB1 ENSGALG00000015887 5854 0.87 - - - - - - - 0.870 - - URB1 ribosome biogenesis 1 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:17344]
43. LZTFL1 ENSGALG00000033928 3493 0.87 - - - - - - - 0.870 - - leucine zipper transcription factor like 1 [Source:HGNC Symbol;Acc:HGNC:6741]
44. TLK2 ENSGALG00000000410 4690 0.87 - - - - - - - 0.870 - - tousled like kinase 2 [Source:HGNC Symbol;Acc:HGNC:11842]
45. ITGA1 ENSGALG00000014891 11378 0.869 - - - - - - - 0.869 - - integrin subunit alpha 1 [Source:NCBI gene;Acc:395951]
46. ACAD8 ENSGALG00000001557 2562 0.869 - - - - - - - 0.869 - - acyl-CoA dehydrogenase family member 8 [Source:NCBI gene;Acc:419739]
47. FBN2 ENSGALG00000014686 4538 0.869 - - - - - - - 0.869 - - fibrillin 2 [Source:HGNC Symbol;Acc:HGNC:3604]
48. KDM5B ENSGALG00000038948 50645 0.868 - - - - - - 0.868 - - - lysine demethylase 5B [Source:NCBI gene;Acc:421168]
49. CDCA9 ENSGALG00000021225 2244 0.868 - - - - - - - 0.868 - - cell division cycle associated 9 [Source:NCBI gene;Acc:415745]
50. KBTBD2 ENSGALG00000038704 2821 0.867 - - - - - - - 0.867 - - kelch repeat and BTB domain containing 2 [Source:HGNC Symbol;Acc:HGNC:21751]
51. KDELR3 ENSGALG00000032313 4376 0.867 - - - - - - - 0.867 - - KDEL endoplasmic reticulum protein retention receptor 3 [Source:NCBI gene;Acc:418026]
52. ARPC1A ENSGALG00000004693 11583 0.867 - - - - - - 0.867 - - - actin related protein 2/3 complex subunit 1A [Source:NCBI gene;Acc:770269]
53. DGKD ENSGALG00000001730 4456 0.866 - - - - - - - 0.866 - - diacylglycerol kinase delta [Source:HGNC Symbol;Acc:HGNC:2851]
54. COX20 ENSGALG00000027440 5881 0.866 - - - - - - - 0.866 - - COX20, cytochrome c oxidase assembly factor [Source:NCBI gene;Acc:421493]
55. RPL7L1 ENSGALG00000011974 20292 0.865 - - - - - - 0.865 - - - ribosomal protein L7 like 1 [Source:NCBI gene;Acc:422676]
56. PHPT1 ENSGALG00000039061 17343 0.865 - - - - - - 0.865 - - - phosphohistidine phosphatase 1 [Source:NCBI gene;Acc:770750]
57. SPTAN1 ENSGALG00000004719 20251 0.863 - - - - - - - 0.863 - - spectrin alpha, non-erythrocytic 1 [Source:NCBI gene;Acc:374234]
58. AMOTL2 5217 0.861 - - - - - - - 0.861 - - angiomotin like 2, transcript variant X3
59. XPO1 ENSGALG00000029476 9526 0.859 - - - - - - 0.859 - - - exportin 1 [Source:NCBI gene;Acc:421192]
60. ARL4A ENSGALG00000027757 4285 0.859 - - - - - - - 0.859 - - ADP ribosylation factor like GTPase 4A [Source:HGNC Symbol;Acc:HGNC:695]
61. CAP1 ENSGALG00000036294 18598 0.859 - - - - - - 0.859 - - - cyclase associated actin cytoskeleton regulatory protein 1 [Source:HGNC Symbol;Acc:HGNC:20040]
62. RNF219 ENSGALG00000016911 4458 0.859 - - - - - - 0.859 - - - ring finger protein 219 [Source:HGNC Symbol;Acc:HGNC:20308]
63. VATB VATB 13756 0.858 - - - - - - - 0.858 - -
64. SRRM1 ENSGALG00000001283 23820 0.856 - - - - - - 0.856 - - - serine and arginine repetitive matrix 1 [Source:NCBI gene;Acc:428216]
65. PDHA1 ENSGALG00000016430 7070 0.853 - - - - - - 0.853 - - - pyruvate dehydrogenase E1 alpha 1 subunit [Source:NCBI gene;Acc:418610]
66. UCH-L1 UCH-L1 12697 0.852 - - - - - - - 0.852 - -
67. UBE2F ENSGALG00000003812 13874 0.851 - - - - - - 0.851 - - - ubiquitin conjugating enzyme E2 F (putative) [Source:NCBI gene;Acc:424015]
68. RAD21 ENSGALG00000029523 25658 0.851 - - - - - - 0.851 - - - RAD21 cohesin complex component [Source:NCBI gene;Acc:420286]
69. RCHY1 ENSGALG00000023335 12947 0.85 - - - - - - 0.850 - - - ring finger and CHY zinc finger domain containing 1 [Source:NCBI gene;Acc:771726]
70. AMD1 ENSGALG00000039575 8900 0.85 - - - - - - 0.850 - - - adenosylmethionine decarboxylase 1 [Source:NCBI gene;Acc:421755]
71. RAD23B ENSGALG00000015540 10828 0.85 - - - - - - 0.850 - - - RAD23 homolog B, nucleotide excision repair protein [Source:HGNC Symbol;Acc:HGNC:9813]
72. PARN ENSGALG00000003091 6363 0.848 - - - - - - 0.848 - - - poly(A)-specific ribonuclease [Source:NCBI gene;Acc:416423]
73. RPL35 ENSGALG00000035677 252113 0.848 - - - - - - 0.848 - - - ribosomal protein L35 [Source:NCBI gene;Acc:374133]
74. EXO1 ENSGALG00000010748 7572 0.848 - - - - - - 0.848 - - - exonuclease 1 [Source:HGNC Symbol;Acc:HGNC:3511]
75. GLRX3 ENSGALG00000010464 22578 0.847 - - - - - - 0.847 - - - glutaredoxin 3 [Source:NCBI gene;Acc:423968]
76. TIMM17A ENSGALG00000000086 19205 0.846 - - - - - - 0.846 - - - translocase of inner mitochondrial membrane 17 homolog A (yeast) [Source:NCBI gene;Acc:421147]
77. CHMP1A ENSGALG00000006161 4195 0.846 - - - - - - - 0.846 - - charged multivesicular body protein 1A [Source:NCBI gene;Acc:415841]
78. CPSF2 ENSGALG00000010783 5236 0.844 - - - - - - 0.844 - - - cleavage and polyadenylation specific factor 2 [Source:NCBI gene;Acc:423416]
79. GNL3 ENSGALG00000001613 10911 0.844 - - - - - - 0.844 - - - G protein nucleolar 3 [Source:HGNC Symbol;Acc:HGNC:29931]
80. ENSGALG00000004132 ENSGALG00000004132 9287 0.844 - - - - - - - 0.844 - -
81. ASF1A ENSGALG00000014887 11319 0.842 - - - - - - 0.842 - - - anti-silencing function 1A histone chaperone [Source:NCBI gene;Acc:723780]
82. AATF ENSGALG00000005420 6501 0.842 - - - - - - - 0.842 - - apoptosis antagonizing transcription factor [Source:NCBI gene;Acc:417653]
83. UFD1L 12964 0.842 - - - - - - 0.842 - - - ubiquitin fusion degradation 1 like (yeast)
84. PITPNB ENSGALG00000005654 21578 0.84 - - - - - - - 0.840 - - phosphatidylinositol transfer protein beta [Source:NCBI gene;Acc:416912]
85. KLF10 ENSGALG00000037913 3529 0.84 - - - - - - - 0.840 - - Kruppel like factor 10 [Source:HGNC Symbol;Acc:HGNC:11810]
86. UBQLN1 ENSGALG00000012585 5158 0.84 - - - - - - 0.840 - - - ubiquilin 1 [Source:HGNC Symbol;Acc:HGNC:12508]
87. SMU1 ENSGALG00000002014 8136 0.84 - - - - - - 0.840 - - - SMU1, DNA replication regulator and spliceosomal factor [Source:NCBI gene;Acc:427377]
88. GMNN ENSGALG00000013626 15838 0.839 - - - - - - 0.839 - - - geminin, DNA replication inhibitor [Source:NCBI gene;Acc:421004]
89. PHAX ENSGALG00000014691 8114 0.839 - - - - - - 0.839 - - - phosphorylated adaptor for RNA export [Source:NCBI gene;Acc:427124]
90. GPATCH2 ENSGALG00000009627 4061 0.838 - - - - - - - 0.838 - - G-patch domain containing 2 [Source:NCBI gene;Acc:421355]
91. RAE1 ENSGALG00000007653 8930 0.838 - - - - - - - 0.838 - - ribonucleic acid export 1 [Source:NCBI gene;Acc:419324]
92. TRIP12 ENSGALG00000002929 11713 0.837 - - - - - - 0.837 - - - thyroid hormone receptor interactor 12 [Source:HGNC Symbol;Acc:HGNC:12306]
93. SNRNP40 ENSGALG00000000615 32298 0.836 - - - - - - 0.836 - - - small nuclear ribonucleoprotein U5 subunit 40 [Source:NCBI gene;Acc:419556]
94. LOC776067 ENSGALG00000016808 9164 0.835 - - - - - - 0.835 - - - E3 SUMO-protein ligase RanBP2-like, transcript variant X50
95. PTP4A2 ENSGALG00000003265 24826 0.834 - - - - - - 0.834 - - - protein tyrosine phosphatase type IVA, member 2 [Source:HGNC Symbol;Acc:HGNC:9635]
96. SEC22B ENSGALG00000039704 16080 0.834 - - - - - - 0.834 - - - SEC22 homolog B, vesicle trafficking protein [Source:NCBI gene;Acc:424377]
97. GLRX5 ENSGALG00000011079 28943 0.833 - - - - - - 0.833 - - - glutaredoxin 5 [Source:NCBI gene;Acc:423440]
98. ZFR ENSGALG00000003235 8466 0.833 - - - - - - 0.833 - - - zinc finger RNA binding protein, transcript variant X3
99. TMPO ENSGALG00000011504 14454 0.833 - - - - - - 0.833 - - - thymopoietin [Source:NCBI gene;Acc:417923]
100. DYNC1H1 ENSGALG00000011330 16400 0.832 - - - - - - 0.832 - - - dynein cytoplasmic 1 heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:2961]

There are 445 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA