Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for RRN3

Gene Name Gene ID Reads Annotation
RRN3 ENSGALG00000041989 3934 RRN3 homolog, RNA polymerase I transcription factor [Source:NCBI gene;Acc:416414]











Genes with expression patterns similar to RRN3

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. RRN3 ENSGALG00000041989 3934 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 RRN3 homolog, RNA polymerase I transcription factor [Source:NCBI gene;Acc:416414]
2. PIK3IP1 ENSGALG00000006942 8388 2.372 - - 0.726 - - - - 0.851 - 0.795 phosphoinositide-3-kinase interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:24942]
3. GCLM ENSGALG00000005782 15789 1.899 - - - - - - 0.945 0.954 - - glutamate-cysteine ligase modifier subunit [Source:NCBI gene;Acc:424492]
4. GCC2 ENSGALG00000016806 1085 1.872 - - 0.891 - - - 0.981 - - - GRIP and coiled-coil domain containing 2 [Source:HGNC Symbol;Acc:HGNC:23218]
5. LMNB2 ENSGALG00000000470 4364 1.861 - - 0.888 - - - 0.973 - - - lamin B2 [Source:NCBI gene;Acc:396222]
6. SQLE ENSGALG00000036915 4172 1.844 - - 0.875 - - - - 0.969 - - squalene epoxidase [Source:NCBI gene;Acc:420335]
7. DUSP19 ENSGALG00000043268 5543 1.825 - - 0.923 - - - 0.902 - - - dual specificity phosphatase 19 [Source:HGNC Symbol;Acc:HGNC:18894]
8. GTF2E1 ENSGALG00000042320 7712 1.805 - - 0.938 - - - 0.867 - - - general transcription factor IIE subunit 1 [Source:HGNC Symbol;Acc:HGNC:4650]
9. THOC2 ENSGALG00000008507 9501 1.794 - - 0.834 - - - 0.960 - - - THO complex 2 [Source:HGNC Symbol;Acc:HGNC:19073]
10. TM9SF3 ENSGALG00000005534 15290 1.773 - - 0.809 - - - 0.964 - - - transmembrane 9 superfamily member 3
11. MRPS11 ENSGALG00000006777 16009 1.759 - - 0.843 - - - 0.916 - - - mitochondrial ribosomal protein S11 [Source:NCBI gene;Acc:415498]
12. HBXIP HBXIP 8637 1.742 - - 0.743 - - - - 0.999 - -
13. TUBGCP3 ENSGALG00000016836 332 1.718 - - 0.958 - - - - - - 0.760 tubulin gamma complex associated protein 3 [Source:HGNC Symbol;Acc:HGNC:18598]
14. AKAP10 ENSGALG00000004679 103 1.716 - - 0.973 - - - - - - 0.743 A-kinase anchoring protein 10 [Source:HGNC Symbol;Acc:HGNC:368]
15. RAD54L2 ENSGALG00000003243 187 1.707 - - 0.973 - - - - - - 0.734 RAD54-like 2 (S. cerevisiae) [Source:NCBI gene;Acc:415933]
16. TRUB1 ENSGALG00000009091 1005 1.686 - - 0.864 - - - - - - 0.822 TruB pseudouridine synthase family member 1 [Source:HGNC Symbol;Acc:HGNC:16060]
17. RTN4 ENSGALG00000029261 45730 1.677 - - 0.913 - - - - 0.764 - - reticulon 4 [Source:NCBI gene;Acc:378790]
18. SNRPF ENSGALG00000011409 23557 1.65 - - - - - - 0.883 0.767 - - small nuclear ribonucleoprotein polypeptide F [Source:NCBI gene;Acc:417916]
19. SELK SELK 15022 1.63 - - 0.907 - - - 0.723 - - -
20. DERL2 ENSGALG00000041844 4509 1.579 - - 0.856 - - - 0.723 - - - derlin 2 [Source:HGNC Symbol;Acc:HGNC:17943]
21. PPP2CA ENSGALG00000006462 26306 1.531 - - 0.793 - - - - - 0.738 - protein phosphatase 2 catalytic subunit alpha [Source:NCBI gene;Acc:416318]
22. TCOF1 ENSGALG00000005535 24554 1.497 - - 0.756 - - - - 0.741 - - treacle ribosome biogenesis factor 1 [Source:NCBI gene;Acc:416276]
23. SUMO2 ENSGALG00000007971 46283 1.435 - - 0.720 - - - - 0.715 - - small ubiquitin-like modifier 2 [Source:NCBI gene;Acc:770125]
24. RNF113A ENSGALG00000000538 3985 0.999 - - - - - - - 0.999 - - ring finger protein 113A [Source:NCBI gene;Acc:419956]
25. CARKD CARKD 2914 0.999 - - - - - - - 0.999 - -
26. GGA3 ENSGALG00000007992 3566 0.999 - - - - - - - 0.999 - - golgi associated, gamma adaptin ear containing, ARF binding protein 3 [Source:NCBI gene;Acc:422121]
27. TMTC2 ENSGALG00000010975 7040 0.999 - - - - - - - 0.999 - - transmembrane and tetratricopeptide repeat containing 2 [Source:HGNC Symbol;Acc:HGNC:25440]
28. MADD ENSGALG00000008181 2273 0.999 - - - - - - - 0.999 - - MAP kinase activating death domain [Source:HGNC Symbol;Acc:HGNC:6766]
29. FXN ENSGALG00000015108 1867 0.999 - - - - - - - 0.999 - - frataxin [Source:HGNC Symbol;Acc:HGNC:3951]
30. JKAMP ENSGALG00000012009 5781 0.999 - - - - - - - 0.999 - - JNK1/MAPK8-associated membrane protein [Source:NCBI gene;Acc:423530]
31. KIAA0895L 1739 0.999 - - - - - - - 0.999 - - KIAA0895 like, transcript variant X4
32. SCLT1 2397 0.999 - - - - - - - 0.999 - - sodium channel and clathrin linker 1, transcript variant X6
33. ENSGALG00000010034 ENSGALG00000010034 3293 0.999 - - - - - - - 0.999 - -
34. NPFF1 NPFF1 3177 0.999 - - - - - - - 0.999 - -
35. PDCD2L 4843 0.999 - - - - - - - 0.999 - - programmed cell death 2-like
36. UBALD1 ENSGALG00000007619 8536 0.998 - - - - - - - 0.998 - - UBA like domain containing 1 [Source:HGNC Symbol;Acc:HGNC:29576]
37. YTHDC2 2266 0.998 - - - - - - - 0.998 - - YTH domain containing 2, transcript variant X3
38. FAM125B FAM125B 2953 0.998 - - - - - - - 0.998 - -
39. ATL1 ENSGALG00000012339 3789 0.998 - - - - - - - 0.998 - - atlastin GTPase 1 [Source:HGNC Symbol;Acc:HGNC:11231]
40. CHMP5 ENSGALG00000013160 13347 0.997 - - - - - - - 0.997 - - charged multivesicular body protein 5 [Source:NCBI gene;Acc:420968]
41. RIC8A ENSGALG00000004191 6094 0.997 - - - - - - - 0.997 - - RIC8 guanine nucleotide exchange factor A [Source:NCBI gene;Acc:422987]
42. EIF3D ENSGALG00000012529 40887 0.997 - - - - - - - 0.997 - - eukaryotic translation initiation factor 3 subunit D [Source:HGNC Symbol;Acc:HGNC:3278]
43. RBFA ENSGALG00000036067 6542 0.997 - - - - - - - 0.997 - - ribosome binding factor A (putative) [Source:NCBI gene;Acc:420806]
44. DDX24 ENSGALG00000010884 5485 0.997 - - - - - - - 0.997 - - DEAD-box helicase 24 [Source:HGNC Symbol;Acc:HGNC:13266]
45. PGM1 ENSGALG00000011016 3391 0.996 - - - - - - - 0.996 - - phosphoglucomutase 1 [Source:NCBI gene;Acc:424691]
46. CHTOP ENSGALG00000042129 24112 0.992 - - - - - - - 0.992 - - chromatin target of PRMT1 [Source:HGNC Symbol;Acc:HGNC:24511]
47. CASP3 ENSGALG00000010638 11572 0.991 - - - - - - - 0.991 - - caspase 3 [Source:NCBI gene;Acc:395476]
48. ARHGAP11A ENSGALG00000009731 6817 0.989 - - - - - - - 0.989 - - Rho GTPase activating protein 11A [Source:NCBI gene;Acc:423289]
49. NECAP1 ENSGALG00000037656 5181 0.989 - - - - - - - 0.989 - - NECAP endocytosis associated 1 [Source:HGNC Symbol;Acc:HGNC:24539]
50. IRAK2 ENSGALG00000008407 5934 0.989 - - - - - - 0.989 - - - interleukin 1 receptor associated kinase 2 [Source:NCBI gene;Acc:416118]
51. PNO1 ENSGALG00000009093 11153 0.989 - - - - - - 0.989 - - - partner of NOB1 homolog [Source:NCBI gene;Acc:769547]
52. NDUFB8 ENSGALG00000005704 5781 0.988 - - - - - - 0.988 - - - NADH:ubiquinone oxidoreductase subunit B8 [Source:NCBI gene;Acc:423763]
53. ABCD3 ENSGALG00000005647 4844 0.987 - - - - - - 0.987 - - - ATP binding cassette subfamily D member 3 [Source:NCBI gene;Acc:424487]
54. MMADHC ENSGALG00000012473 9026 0.987 - - - - - - - 0.987 - - methylmalonic aciduria and homocystinuria, cblD type [Source:NCBI gene;Acc:424311]
55. LEPROTL1 ENSGALG00000024482 4251 0.987 - - - - - - 0.987 - - - leptin receptor overlapping transcript-like 1
56. CLCN3 ENSGALG00000009674 3704 0.986 - - - - - - 0.986 - - - chloride voltage-gated channel 3 [Source:HGNC Symbol;Acc:HGNC:2021]
57. AK6 ENSGALG00000020534 4791 0.985 - - - - - - 0.985 - - - adenylate kinase 6 [Source:NCBI gene;Acc:425215]
58. CAMKK2 ENSGALG00000040131 2795 0.985 - - - - - - 0.985 - - - calcium/calmodulin dependent protein kinase kinase 2, transcript variant X9
59. NPHP3 ENSGALG00000034586 1465 0.985 - - - - - - 0.985 - - - nephrocystin 3, transcript variant X1
60. KLHL29 ENSGALG00000016495 582 0.983 - - - - - - 0.983 - - - kelch like family member 29 [Source:HGNC Symbol;Acc:HGNC:29404]
61. DNAJA3 ENSGALG00000007821 3963 0.983 - - - - - - 0.983 - - - DnaJ heat shock protein family (Hsp40) member A3 [Source:HGNC Symbol;Acc:HGNC:11808]
62. ATN1 ENSGALG00000014554 3270 0.983 - - - - - - 0.983 - - - atrophin 1 [Source:HGNC Symbol;Acc:HGNC:3033]
63. POLR3E ENSGALG00000007008 4010 0.983 - - - - - - 0.983 - - - RNA polymerase III subunit E [Source:HGNC Symbol;Acc:HGNC:30347]
64. ENSGALG00000002923 ENSGALG00000002923 2233 0.983 - - - - - - 0.983 - - -
65. INTS10 ENSGALG00000010130 6320 0.983 - - - - - - 0.983 - - - integrator complex subunit 10 [Source:NCBI gene;Acc:422489]
66. ARHGAP29 ENSGALG00000005683 3622 0.982 - - - - - - 0.982 - - - Rho GTPase activating protein 29 [Source:NCBI gene;Acc:424488]
67. POPDC3 ENSGALG00000027420 700 0.982 - - - - - - 0.982 - - - popeye domain containing 3 [Source:NCBI gene;Acc:395434]
68. CETN2 ENSGALG00000007510 1688 0.982 - - - - - - 0.982 - - - centrin 2 [Source:NCBI gene;Acc:422303]
69. SHQ1 ENSGALG00000007798 1982 0.982 - - - - - - 0.982 - - - SHQ1, H/ACA ribonucleoprotein assembly factor [Source:HGNC Symbol;Acc:HGNC:25543]
70. MYST2 MYST2 8078 0.982 - - - - - - 0.982 - - -
71. BFAR ENSGALG00000003111 1778 0.981 - - - - - - 0.981 - - - bifunctional apoptosis regulator [Source:HGNC Symbol;Acc:HGNC:17613]
72. gga-mir-6643 ENSGALG00000027935 4442 0.981 - - - - - - 0.981 - - - gga-mir-6643 [Source:miRBase;Acc:MI0022462]
73. HACE1 ENSGALG00000015415 1194 0.981 - - - - - - 0.981 - - - HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 [Source:NCBI gene;Acc:421788]
74. METTL11A METTL11A 11876 0.98 - - - - - - 0.980 - - -
75. MOB2 ENSGALG00000030499 3658 0.979 - - - - - - 0.979 - - - MOB kinase activator 2 [Source:HGNC Symbol;Acc:HGNC:24904]
76. UBAC1 ENSGALG00000042564 598 0.979 - - - - - - 0.979 - - - UBA domain containing 1 [Source:NCBI gene;Acc:427754]
77. SLC1A1 ENSGALG00000010187 637 0.979 - - - - - - 0.979 - - - solute carrier family 1 member 1 [Source:HGNC Symbol;Acc:HGNC:10939]
78. CLEC16A ENSGALG00000007167 66 0.979 - - 0.979 - - - - - - - C-type lectin domain containing 16A [Source:HGNC Symbol;Acc:HGNC:29013]
79. AKAP7 ENSGALG00000029794 3287 0.979 - - - - - - 0.979 - - - A-kinase anchoring protein 7 [Source:HGNC Symbol;Acc:HGNC:377]
80. SDCCAG8 ENSGALG00000010713 311 0.979 - - - - - - 0.979 - - - serologically defined colon cancer antigen 8, transcript variant X5
81. AP2B1 ENSGALG00000042125 13229 0.978 - - - - - - 0.978 - - - adaptor related protein complex 2 subunit beta 1 [Source:HGNC Symbol;Acc:HGNC:563]
82. MTFMT ENSGALG00000007353 805 0.978 - - - - - - 0.978 - - - mitochondrial methionyl-tRNA formyltransferase [Source:HGNC Symbol;Acc:HGNC:29666]
83. ITM2B ENSGALG00000016996 1112 0.978 - - 0.978 - - - - - - - integral membrane protein 2B [Source:NCBI gene;Acc:395969]
84. SZT2 ENSGALG00000028561 255 0.978 - - 0.978 - - - - - - - seizure threshold 2 homolog (mouse) [Source:NCBI gene;Acc:424566]
85. NXPE3 ENSGALG00000015344 111 0.978 - - 0.978 - - - - - - - neurexophilin and PC-esterase domain family member 3 [Source:HGNC Symbol;Acc:HGNC:28238]
86. DNA2 ENSGALG00000004037 5426 0.978 - - - - - - 0.978 - - - DNA replication helicase/nuclease 2 [Source:NCBI gene;Acc:423688]
87. PTDSS2 ENSGALG00000004300 682 0.978 - - 0.978 - - - - - - - phosphatidylserine synthase 2 [Source:NCBI gene;Acc:422997]
88. TBCCD1 ENSGALG00000006566 2696 0.978 - - - - - - 0.978 - - - TBCC domain containing 1 [Source:NCBI gene;Acc:424869]
89. SREBF2 ENSGALG00000041687 4519 0.977 - - - - - - 0.977 - - - sterol regulatory element binding transcription factor 2 [Source:HGNC Symbol;Acc:HGNC:11290]
90. UEVLD ENSGALG00000006342 164 0.977 - - 0.977 - - - - - - - UEV and lactate/malate dehyrogenase domains [Source:NCBI gene;Acc:100858486]
91. BCAS1 ENSGALG00000007796 379 0.977 - - - - - - 0.977 - - - breast carcinoma amplified sequence 1 [Source:HGNC Symbol;Acc:HGNC:974]
92. MED6 ENSGALG00000029743 9414 0.977 - - - - - - 0.977 - - - mediator complex subunit 6 [Source:NCBI gene;Acc:426282]
93. SMARCAD1 ENSGALG00000037339 149 0.976 - - 0.976 - - - - - - - SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 [Source:HGNC Symbol;Acc:HGNC:18398]
94. ENSGALG00000002020 ENSGALG00000002020 183 0.976 - - 0.976 - - - - - - -
95. RILPL2 ENSGALG00000003321 5632 0.976 - - - - - - 0.976 - - - Rab interacting lysosomal protein like 2 [Source:HGNC Symbol;Acc:HGNC:28787]
96. NDUFA2 ENSGALG00000040626 27899 0.976 - - - - - - - 0.976 - - NADH:ubiquinone oxidoreductase subunit A2 [Source:NCBI gene;Acc:768860]
97. ENSGALG00000020103 ENSGALG00000020103 64 0.976 - - 0.976 - - - - - - -
98. BBS5 ENSGALG00000009846 344 0.976 - - 0.976 - - - - - - - Bardet-Biedl syndrome 5 [Source:NCBI gene;Acc:424165]
99. F2R ENSGALG00000014983 106 0.976 - - 0.976 - - - - - - - coagulation factor II thrombin receptor [Source:HGNC Symbol;Acc:HGNC:3537]
100. ITGB4 ENSGALG00000002389 44 0.975 - - 0.975 - - - - - - - integrin subunit beta 4 [Source:HGNC Symbol;Acc:HGNC:6158]

There are 715 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA