Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for RPF2

Gene Name Gene ID Reads Annotation
RPF2 ENSGALG00000037087 12788 ribosome production factor 2 homolog [Source:HGNC Symbol;Acc:HGNC:20870]











Genes with expression patterns similar to RPF2

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. RPF2 ENSGALG00000037087 12788 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 ribosome production factor 2 homolog [Source:HGNC Symbol;Acc:HGNC:20870]
2. PSPC1 ENSGALG00000017142 13036 1.725 - - - - - - 0.875 0.850 - - paraspeckle component 1 [Source:NCBI gene;Acc:418955]
3. CUL3 ENSGALG00000005108 9571 1.651 - - - - - - 0.768 0.883 - - cullin 3 [Source:HGNC Symbol;Acc:HGNC:2553]
4. SMC4 ENSGALG00000009553 15715 1.646 - - - - - - 0.868 - - 0.778 structural maintenance of chromosomes 4 [Source:NCBI gene;Acc:395189]
5. MRPL50 ENSGALG00000015543 11649 1.645 - - - - - - 0.829 - - 0.816 mitochondrial ribosomal protein L50 [Source:NCBI gene;Acc:427307]
6. HNRNPD ENSGALG00000011184 10686 1.631 - - - - - - 0.782 - - 0.849 heterogeneous nuclear ribonucleoprotein D [Source:NCBI gene;Acc:422602]
7. LY6E ENSGALG00000041621 16227 1.628 - - - - - - 0.831 - - 0.797 lymphocyte antigen 6 family member E [Source:NCBI gene;Acc:395550]
8. FANCL ENSGALG00000030022 7423 1.611 - - - - - - 0.823 - - 0.788 FA complementation group L [Source:NCBI gene;Acc:421202]
9. STRADA ENSGALG00000000550 6912 1.604 - - - - - - 0.847 - - 0.757 STE20-related kinase adaptor alpha [Source:NCBI gene;Acc:419957]
10. FBXO5 ENSGALG00000013607 6156 1.59 - - - - - - 0.742 - - 0.848 F-box protein 5 [Source:HGNC Symbol;Acc:HGNC:13584]
11. SPG21 ENSGALG00000007262 8050 1.581 - - - - - - 0.857 - - 0.724 SPG21, maspardin [Source:NCBI gene;Acc:415526]
12. LSM6 ENSGALG00000009985 18582 1.578 - - - - - - 0.814 - - 0.764 LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated [Source:NCBI gene;Acc:422466]
13. MRPS30 ENSGALG00000014874 3416 1.576 - - - - - - 0.787 - - 0.789 mitochondrial ribosomal protein S30 [Source:NCBI gene;Acc:395781]
14. UCHL3 ENSGALG00000016921 16208 1.574 - - - - - - 0.792 - - 0.782 ubiquitin C-terminal hydrolase L3 [Source:NCBI gene;Acc:395626]
15. NRSN1 ENSGALG00000037811 11424 1.571 - - - - - - 0.732 - - 0.839 neurensin 1 [Source:HGNC Symbol;Acc:HGNC:17881]
16. MAN2A1 ENSGALG00000000255 4543 1.571 - - - - - - 0.820 - - 0.751 mannosidase alpha class 2A member 1 [Source:HGNC Symbol;Acc:HGNC:6824]
17. NDUFAF1 ENSGALG00000008587 14779 1.57 - - - - - - 0.701 - - 0.869 NADH:ubiquinone oxidoreductase complex assembly factor 1 [Source:HGNC Symbol;Acc:HGNC:18828]
18. COMMD10 ENSGALG00000002308 7442 1.568 - - - - - - 0.849 0.719 - - COMM domain containing 10 [Source:NCBI gene;Acc:427388]
19. ERBB2IP ERBB2IP 5800 1.559 - - - - - - 0.803 - - 0.756
20. ARL13B ENSGALG00000015412 2968 1.549 - - - - - - 0.761 - - 0.788 ADP ribosylation factor like GTPase 13B [Source:HGNC Symbol;Acc:HGNC:25419]
21. PPFIA1 ENSGALG00000035774 5258 1.548 - - - - - - 0.792 - - 0.756 PTPRF interacting protein alpha 1 [Source:HGNC Symbol;Acc:HGNC:9245]
22. COL5A2 ENSGALG00000031112 18358 1.546 - - - - - - 0.730 - - 0.816 collagen type V alpha 2 chain [Source:HGNC Symbol;Acc:HGNC:2210]
23. GXYLT1 ENSGALG00000009532 5682 1.544 - - - - - - 0.737 - - 0.807 glucoside xylosyltransferase 1 [Source:NCBI gene;Acc:417789]
24. MB21D1 2460 1.543 - - - - - - 0.736 - - 0.807 Mab-21 domain containing 1
25. TXNDC5 ENSGALG00000012784 4678 1.538 - - - - - - 0.727 - - 0.811 thioredoxin domain containing 5 [Source:NCBI gene;Acc:420867]
26. C14orf1 C14orf1 14289 1.536 - - - - - - 0.826 0.710 - -
27. RAD21 ENSGALG00000029523 25658 1.532 - - - - - - 0.781 - - 0.751 RAD21 cohesin complex component [Source:NCBI gene;Acc:420286]
28. TMED7 ENSGALG00000028484 21008 1.531 - - - - - - 0.755 - - 0.776 Gallus gallus transmembrane p24 trafficking protein 7 (TMED7), mRNA. [Source:RefSeq mRNA;Acc:NM_001319030]
29. GGA.31975 GGA.31975 8825 1.53 - - - - - - 0.785 - - 0.745
30. GPBP1 ENSGALG00000014724 5454 1.526 - - - - - - 0.769 - - 0.757 GC-rich promoter binding protein 1 [Source:HGNC Symbol;Acc:HGNC:29520]
31. ATG16L1 ENSGALG00000001619 3562 1.526 - - - - - - 0.757 - - 0.769 autophagy related 16 like 1 [Source:HGNC Symbol;Acc:HGNC:21498]
32. CRCP ENSGALG00000002587 8809 1.517 - - - - - - 0.761 - - 0.756 CGRP receptor component [Source:NCBI gene;Acc:396022]
33. RAD50 ENSGALG00000006794 4308 1.516 - - - - - - 0.754 - - 0.762 RAD50 double strand break repair protein, transcript variant X4
34. WFDC1 ENSGALG00000005503 6152 1.514 - - - - - - 0.772 - - 0.742 WAP four-disulfide core domain 1 [Source:NCBI gene;Acc:395238]
35. EXOC8 ENSGALG00000043280 3596 1.508 - - - - - - 0.797 0.711 - - exocyst complex component 8 [Source:NCBI gene;Acc:421531]
36. CWC27 ENSGALG00000014747 8389 1.506 - - - - - - 0.741 - - 0.765 CWC27 spliceosome associated protein homolog [Source:HGNC Symbol;Acc:HGNC:10664]
37. CHMP5 ENSGALG00000013160 13347 1.503 - - - - - - 0.702 - - 0.801 charged multivesicular body protein 5 [Source:NCBI gene;Acc:420968]
38. UBL3 ENSGALG00000017084 7417 1.499 - - - - - - 0.719 - - 0.780 ubiquitin like 3 [Source:NCBI gene;Acc:418921]
39. POLR2B ENSGALG00000011387 4864 1.496 - - - - - - 0.720 - - 0.776 RNA polymerase II subunit B [Source:NCBI gene;Acc:422621]
40. ERP44 ENSGALG00000013452 5352 1.495 - - - - - - - 0.718 - 0.777 endoplasmic reticulum protein 44 [Source:HGNC Symbol;Acc:HGNC:18311]
41. LOC426385 ENSGALG00000026301 2703 1.494 - - - - - - 0.757 - - 0.737 serine/threonine kinase 35-like, transcript variant X2
42. GTF2F2 ENSGALG00000016974 7524 1.492 - - - - - - 0.772 - - 0.720 general transcription factor IIF subunit 2 [Source:HGNC Symbol;Acc:HGNC:4653]
43. FOCAD ENSGALG00000015071 3677 1.49 - - - - - - - 0.715 - 0.775 focadhesin [Source:NCBI gene;Acc:427233]
44. CTSO ENSGALG00000009373 4186 1.488 - - - - - - 0.711 - - 0.777 cathepsin O [Source:NCBI gene;Acc:422410]
45. GORASP1 ENSGALG00000006033 4033 1.488 - - - - - - 0.722 - - 0.766 golgi reassembly stacking protein 1 [Source:NCBI gene;Acc:420426]
46. ACO2 ENSGALG00000011950 30387 1.486 - - - - - - 0.702 - - 0.784 aconitase 2 [Source:NCBI gene;Acc:374009]
47. COX5A ENSGALG00000014121 55281 1.486 - - - - - - 0.761 - - 0.725 cytochrome c oxidase subunit 5A [Source:HGNC Symbol;Acc:HGNC:2267]
48. MRPS31 ENSGALG00000017033 9287 1.483 - - - - - - 0.711 - - 0.772 mitochondrial ribosomal protein S31 [Source:HGNC Symbol;Acc:HGNC:16632]
49. MED24 ENSGALG00000013506 5403 1.479 - - - - - - 0.749 - - 0.730 mediator complex subunit 24 [Source:NCBI gene;Acc:426134]
50. YIPF3 ENSGALG00000041037 6126 1.478 - - - - - - 0.750 - - 0.728 Yip1 domain family member 3 [Source:NCBI gene;Acc:421453]
51. RAB10 ENSGALG00000016535 5272 1.477 - - - - - - 0.753 - - 0.724 RAB10, member RAS oncogene family [Source:NCBI gene;Acc:421994]
52. QDPR ENSGALG00000030070 6953 1.475 - - - - - - 0.756 - - 0.719 quinoid dihydropteridine reductase [Source:NCBI gene;Acc:426335]
53. gga-mir-6587 ENSGALG00000026386 9441 1.467 - - - - - - 0.717 - - 0.750 gga-mir-6587 [Source:miRBase;Acc:MI0022407]
54. CLIC4 ENSGALG00000001262 11497 1.466 - - - - - - 0.716 - - 0.750 chloride intracellular channel 4 [Source:HGNC Symbol;Acc:HGNC:13518]
55. TBL1XR1 ENSGALG00000039182 16983 1.466 - - - - - - 0.746 - - 0.720 transducin beta like 1 X-linked receptor 1 [Source:NCBI gene;Acc:426284]
56. WDR53 ENSGALG00000006395 4938 1.464 - - - - - - 0.730 - - 0.734 WD repeat domain 53 [Source:HGNC Symbol;Acc:HGNC:28786]
57. AGPS ENSGALG00000009236 2250 1.451 - - - - - - 0.711 - - 0.740 alkylglycerone phosphate synthase [Source:HGNC Symbol;Acc:HGNC:327]
58. PSMC3IP ENSGALG00000019741 5428 1.449 - - - - - - 0.730 0.719 - - PSMC3 interacting protein [Source:HGNC Symbol;Acc:HGNC:17928]
59. DDX54 ENSGALG00000007490 8729 1.449 - - - - - - - 0.715 - 0.734 DEAD-box helicase 54 [Source:HGNC Symbol;Acc:HGNC:20084]
60. NEO1 ENSGALG00000001774 10165 1.447 - - - - - - 0.718 - - 0.729 neogenin 1 [Source:HGNC Symbol;Acc:HGNC:7754]
61. POLR1B ENSGALG00000032273 3845 1.446 - - - - - - 0.742 - - 0.704 RNA polymerase I subunit B [Source:HGNC Symbol;Acc:HGNC:20454]
62. DRG1 ENSGALG00000006921 10791 1.436 - - - - - - 0.723 0.713 - - developmentally regulated GTP binding protein 1 [Source:NCBI gene;Acc:416962]
63. PCNP ENSGALG00000015330 15750 1.429 - - - - - - 0.727 - - 0.702 PEST proteolytic signal containing nuclear protein [Source:NCBI gene;Acc:418398]
64. ASF1A ENSGALG00000014887 11319 1.429 - - - - - - 0.725 - - 0.704 anti-silencing function 1A histone chaperone [Source:NCBI gene;Acc:723780]
65. SDF2L1 ENSGALG00000031982 6084 1.421 - - - - - - 0.707 - - 0.714 stromal cell derived factor 2 like 1 [Source:HGNC Symbol;Acc:HGNC:10676]
66. ZDHHC14 ENSGALG00000013695 2648 1.416 - - - - - - - 0.702 - 0.714 zinc finger DHHC-type containing 14 [Source:HGNC Symbol;Acc:HGNC:20341]
67. ADAT1 ENSGALG00000000908 1484 1.415 - - - - - - 0.700 0.715 - - adenosine deaminase, tRNA specific 1 [Source:NCBI gene;Acc:415886]
68. USP10 ENSGALG00000005674 7768 0.927 - - - - - - - - - 0.927 ubiquitin specific peptidase 10 [Source:NCBI gene;Acc:415817]
69. NOC4L ENSGALG00000002272 9644 0.912 - - - - - - 0.912 - - - nucleolar complex associated 4 homolog [Source:NCBI gene;Acc:416798]
70. YWHAZ ENSGALG00000031387 84985 0.911 - - - - - - 0.911 - - - tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta [Source:NCBI gene;Acc:425619]
71. RBBP4 ENSGALG00000003522 72455 0.908 - - - - - - 0.908 - - - RB binding protein 4, chromatin remodeling factor [Source:NCBI gene;Acc:395658]
72. LSM5 ENSGALG00000041625 22307 0.899 - - - - - - 0.899 - - - LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated [Source:NCBI gene;Acc:420751]
73. EAPP ENSGALG00000010007 5080 0.898 - - - - - - - - - 0.898 E2F associated phosphoprotein [Source:NCBI gene;Acc:423319]
74. TRAPPC2 ENSGALG00000016578 8749 0.896 - - - - - - 0.896 - - - trafficking protein particle complex 2 [Source:NCBI gene;Acc:418634]
75. MAP3K7 ENSGALG00000015596 15164 0.895 - - - - - - 0.895 - - - mitogen-activated protein kinase kinase kinase 7 [Source:HGNC Symbol;Acc:HGNC:6859]
76. KIAA1551 ENSGALG00000045168 3435 0.894 - - - - - - - - - 0.894 KIAA1551, transcript variant X1
77. KIDINS220 ENSGALG00000016409 854 0.893 - - - - - - - - - 0.893 kinase D interacting substrate 220 [Source:HGNC Symbol;Acc:HGNC:29508]
78. TCF25 ENSGALG00000000129 7587 0.89 - - - - - - - - - 0.890 transcription factor 25 [Source:HGNC Symbol;Acc:HGNC:29181]
79. RER1 ENSGALG00000021683 9074 0.889 - - - - - - - - - 0.889 retention in endoplasmic reticulum sorting receptor 1 [Source:NCBI gene;Acc:419397]
80. METAP2 ENSGALG00000011377 16311 0.889 - - - - - - 0.889 - - - methionyl aminopeptidase 2 [Source:NCBI gene;Acc:417912]
81. ZNF593 ENSGALG00000000542 79105 0.887 - - - - - - 0.887 - - - zinc finger protein 593 [Source:NCBI gene;Acc:419549]
82. WDR43 ENSGALG00000032529 12235 0.886 - - - - - - 0.886 - - - WD repeat domain 43 [Source:NCBI gene;Acc:421295]
83. WRNIP1 ENSGALG00000012856 1954 0.886 - - - - - - - - - 0.886 Werner helicase interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:20876]
84. COMMD4 ENSGALG00000001572 31664 0.885 - - - - - - 0.885 - - - COMM domain containing 4 [Source:NCBI gene;Acc:770048]
85. THOP1 ENSGALG00000041934 10122 0.885 - - - - - - 0.885 - - - thimet oligopeptidase 1 [Source:HGNC Symbol;Acc:HGNC:11793]
86. TMEM70 ENSGALG00000033568 10720 0.884 - - - - - - 0.884 - - - transmembrane protein 70 [Source:NCBI gene;Acc:420188]
87. GLRX3 ENSGALG00000010464 22578 0.884 - - - - - - 0.884 - - - glutaredoxin 3 [Source:NCBI gene;Acc:423968]
88. CZH9ORF80 CZH9ORF80 12760 0.883 - - - - - - 0.883 - - -
89. HELLS ENSGALG00000005451 7094 0.883 - - - - - - - - - 0.883 helicase, lymphoid specific [Source:HGNC Symbol;Acc:HGNC:4861]
90. SKAP2 ENSGALG00000030081 13746 0.882 - - - - - - 0.882 - - - src kinase associated phosphoprotein 2 [Source:HGNC Symbol;Acc:HGNC:15687]
91. USMG5 ENSGALG00000034645 33263 0.881 - - - - - - - - - 0.881 up-regulated during skeletal muscle growth 5 homolog (mouse) [Source:NCBI gene;Acc:423873]
92. COX17 ENSGALG00000014981 5646 0.88 - - - - - - - - - 0.880 COX17, cytochrome c oxidase copper chaperone [Source:NCBI gene;Acc:770190]
93. SLC39A6 ENSGALG00000013209 1754 0.88 - - - - - - - - - 0.880 solute carrier family 39 member 6 [Source:HGNC Symbol;Acc:HGNC:18607]
94. VBP1 VBP1 14482 0.879 - - - - - - 0.879 - - -
95. C1orf198 ENSGALG00000026600 5651 0.879 - - - - - - - - - 0.879 chromosome 1 open reading frame 198 [Source:HGNC Symbol;Acc:HGNC:25900]
96. EIF4A2 ENSGALG00000008684 58507 0.878 - - - - - - 0.878 - - - eukaryotic translation initiation factor 4A2 [Source:NCBI gene;Acc:395232]
97. LOC770492 ENSGALG00000027778 695 0.876 - - - - - - - - - 0.876 ras-related and estrogen-regulated growth inhibitor-like
98. MFSD1 ENSGALG00000009593 3116 0.875 - - - - - - - - - 0.875 major facilitator superfamily domain containing 1 [Source:NCBI gene;Acc:425017]
99. TMEM184C ENSGALG00000010019 7856 0.874 - - - - - - 0.874 - - - transmembrane protein 184C [Source:NCBI gene;Acc:422469]
100. MYO5A ENSGALG00000031987 2469 0.873 - - - - - - - - - 0.873 myosin VA [Source:NCBI gene;Acc:396237]

There are 1117 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA