Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for RPE

Gene Name Gene ID Reads Annotation
RPE ENSGALG00000002847 7644 ribulose-5-phosphate-3-epimerase, transcript variant X2











Genes with expression patterns similar to RPE

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. RPE ENSGALG00000002847 7644 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 ribulose-5-phosphate-3-epimerase, transcript variant X2
2. FAM207A ENSGALG00000007513 8748 1.663 - - - - - - 0.841 0.822 - - family with sequence similarity 207 member A [Source:HGNC Symbol;Acc:HGNC:15811]
3. PARN ENSGALG00000003091 6363 1.636 - - - - - - 0.916 0.720 - - poly(A)-specific ribonuclease [Source:NCBI gene;Acc:416423]
4. UBE2E1 ENSGALG00000011286 5483 1.59 - - - - - - 0.844 0.746 - - ubiquitin conjugating enzyme E2 E1 [Source:HGNC Symbol;Acc:HGNC:12477]
5. RIT1 ENSGALG00000014647 7174 1.576 - - - - - - 0.854 0.722 - - Ras like without CAAX 1 [Source:NCBI gene;Acc:425068]
6. NIPA2 ENSGALG00000016737 3792 1.568 - - - - - - 0.808 0.760 - - NIPA magnesium transporter 2 [Source:NCBI gene;Acc:418680]
7. URM1 ENSGALG00000004971 17880 1.564 - - - - - - 0.803 0.761 - - ubiquitin related modifier 1 [Source:NCBI gene;Acc:417221]
8. MPRIP ENSGALG00000004798 6700 1.561 - - - - - - 0.826 0.735 - - myosin phosphatase Rho interacting protein [Source:HGNC Symbol;Acc:HGNC:30321]
9. COIL ENSGALG00000003158 7806 1.559 - - - - - - 0.812 0.747 - - coilin [Source:HGNC Symbol;Acc:HGNC:2184]
10. PSMD10 ENSGALG00000008287 11380 1.556 - - - - - - 0.781 0.775 - - proteasome 26S subunit, non-ATPase 10 [Source:NCBI gene;Acc:422351]
11. NUMB ENSGALG00000009300 4220 1.552 - - - - - - 0.795 0.757 - - NUMB, endocytic adaptor protein [Source:NCBI gene;Acc:395639]
12. YME1L1 ENSGALG00000007492 8652 1.534 - - - - - - 0.739 0.795 - - YME1 like 1 ATPase [Source:NCBI gene;Acc:428418]
13. SRSF5 ENSGALG00000009421 8502 1.528 - - - - - - 0.779 0.749 - - serine and arginine rich splicing factor 5 [Source:NCBI gene;Acc:423258]
14. TLK1 ENSGALG00000009569 5446 1.523 - - - - - - 0.760 0.763 - - tousled like kinase 1 [Source:HGNC Symbol;Acc:HGNC:11841]
15. E2F7 ENSGALG00000031340 3430 1.523 - - - - - - 0.800 0.723 - - E2F transcription factor 7 [Source:HGNC Symbol;Acc:HGNC:23820]
16. PEX10 ENSGALG00000001223 5704 1.521 - - - - - - 0.760 0.761 - - peroxisomal biogenesis factor 10 [Source:NCBI gene;Acc:419396]
17. HISTH1 ENSGALG00000011747 16825 1.515 - - - - - - 0.785 0.730 - - histone H1
18. FN3KRP ENSGALG00000028979 4160 1.514 - - - - - - 0.789 0.725 - - fructosamine 3 kinase related protein [Source:NCBI gene;Acc:417336]
19. PHPT1 ENSGALG00000039061 17343 1.498 - - - - - - 0.731 0.767 - - phosphohistidine phosphatase 1 [Source:NCBI gene;Acc:770750]
20. EBAG9 ENSGALG00000036293 10058 1.497 - - - - - - 0.708 0.789 - - estrogen receptor binding site associated, antigen, 9 [Source:NCBI gene;Acc:420276]
21. MORC3 ENSGALG00000036556 2976 1.48 - - - - - - 0.761 0.719 - - MORC family CW-type zinc finger 3 [Source:NCBI gene;Acc:418513]
22. LEPROT ENSGALG00000011047 7132 1.474 - - - - - - 0.761 0.713 - - leptin receptor overlapping transcript [Source:NCBI gene;Acc:424699]
23. Sep-09 Sep-09 4723 1.465 - - - - - - 0.736 0.729 - -
24. CPOX ENSGALG00000015240 5292 1.458 - - - - - - 0.723 0.735 - - coproporphyrinogen oxidase
25. SMG1 ENSGALG00000006829 1875 1.453 - - - - - - 0.740 0.713 - - SMG1, nonsense mediated mRNA decay associated PI3K related kinase [Source:HGNC Symbol;Acc:HGNC:30045]
26. PSAP ENSGALG00000004769 14759 1.441 - - - - - - 0.737 0.704 - - prosaposin [Source:NCBI gene;Acc:395602]
27. ARPP21 ENSGALG00000043240 2403 1.434 - - - - - - 0.720 0.714 - - cAMP regulated phosphoprotein 21 [Source:HGNC Symbol;Acc:HGNC:16968]
28. GPN3 ENSGALG00000003807 6320 1.419 - - - - - - 0.704 0.715 - - GPN-loop GTPase 3 [Source:HGNC Symbol;Acc:HGNC:30186]
29. MED4 ENSGALG00000016995 3309 0.883 - - - - - - 0.883 - - - mediator complex subunit 4 [Source:HGNC Symbol;Acc:HGNC:17903]
30. SLC30A4 ENSGALG00000005703 5696 0.881 - - - - - - 0.881 - - - solute carrier family 30 member 4 [Source:NCBI gene;Acc:415444]
31. DCPS ENSGALG00000031143 10191 0.874 - - - - - - - 0.874 - - decapping enzyme, scavenger [Source:HGNC Symbol;Acc:HGNC:29812]
32. CDC73 ENSGALG00000002469 4586 0.873 - - - - - - 0.873 - - - cell division cycle 73 [Source:NCBI gene;Acc:424356]
33. UBE2V2 ENSGALG00000028133 7044 0.872 - - - - - - 0.872 - - - ubiquitin conjugating enzyme E2 V2 [Source:NCBI gene;Acc:421109]
34. EIF1AY ENSGALG00000016410 6431 0.869 - - - - - - 0.869 - - - eukaryotic translation initiation factor 1A, Y-linked [Source:NCBI gene;Acc:418606]
35. C5H15ORF29 C5H15ORF29 3709 0.868 - - - - - - 0.868 - - -
36. DNPEP ENSGALG00000011318 10623 0.867 - - - - - - 0.867 - - - aspartyl aminopeptidase [Source:NCBI gene;Acc:424200]
37. HTATSF1 ENSGALG00000006410 3526 0.867 - - - - - - 0.867 - - - HIV-1 Tat specific factor 1 [Source:HGNC Symbol;Acc:HGNC:5276]
38. SHROOM2 ENSGALG00000030802 4517 0.858 - - - - - - 0.858 - - - shroom family member 2 [Source:HGNC Symbol;Acc:HGNC:630]
39. PROS1 ENSGALG00000015409 3685 0.85 - - - - - - 0.850 - - - protein S [Source:HGNC Symbol;Acc:HGNC:9456]
40. CDC42SE2 ENSGALG00000027258 4725 0.85 - - - - - - 0.850 - - - CDC42 small effector 2 [Source:NCBI gene;Acc:768825]
41. BMI1 ENSGALG00000041267 6618 0.85 - - - - - - 0.850 - - - BMI1 proto-oncogene, polycomb ring finger [Source:NCBI gene;Acc:493647]
42. MARK3 ENSGALG00000011505 14846 0.848 - - - - - - 0.848 - - - microtubule affinity regulating kinase 3 [Source:HGNC Symbol;Acc:HGNC:6897]
43. PARL ENSGALG00000002315 15943 0.848 - - - - - - 0.848 - - - presenilin associated rhomboid like
44. SUV39H2 ENSGALG00000013920 4360 0.847 - - - - - - 0.847 - - - suppressor of variegation 3-9 homolog 2 [Source:NCBI gene;Acc:426314]
45. EIF3I ENSGALG00000003337 28832 0.846 - - - - - - 0.846 - - - eukaryotic translation initiation factor 3 subunit I [Source:NCBI gene;Acc:419653]
46. ZYX ENSGALG00000014688 8686 0.845 - - - - - - 0.845 - - - zyxin [Source:NCBI gene;Acc:418300]
47. LONP1 ENSGALG00000040492 7133 0.843 - - - - - - 0.843 - - - lon peptidase 1, mitochondrial [Source:HGNC Symbol;Acc:HGNC:9479]
48. WSB2 ENSGALG00000008151 13246 0.842 - - - - - - - 0.842 - - WD repeat and SOCS box containing 2 [Source:HGNC Symbol;Acc:HGNC:19222]
49. PALD1 ENSGALG00000004465 3553 0.842 - - - - - - 0.842 - - - phosphatase domain containing, paladin 1 [Source:NCBI gene;Acc:373898]
50. SRSF6 ENSGALG00000000990 12424 0.841 - - - - - - 0.841 - - - serine and arginine rich splicing factor 6 [Source:NCBI gene;Acc:419116]
51. MRPL10 ENSGALG00000014387 12386 0.84 - - - - - - 0.840 - - - mitochondrial ribosomal protein L10 [Source:HGNC Symbol;Acc:HGNC:14055]
52. NENF ENSGALG00000009821 4826 0.84 - - - - - - - 0.840 - - neudesin neurotrophic factor [Source:HGNC Symbol;Acc:HGNC:30384]
53. DNM1L ENSGALG00000012929 6174 0.838 - - - - - - - 0.838 - - dynamin 1 like [Source:NCBI gene;Acc:418132]
54. PCBP4 ENSGALG00000027695 7937 0.837 - - - - - - - 0.837 - - poly(rC) binding protein 4 [Source:HGNC Symbol;Acc:HGNC:8652]
55. PAPD7 ENSGALG00000013061 2031 0.833 - - - - - - 0.833 - - - poly(A) RNA polymerase D7, non-canonical [Source:NCBI gene;Acc:770425]
56. APITD1 APITD1 11830 0.833 - - - - - - - 0.833 - -
57. CCNK ENSGALG00000011138 6416 0.833 - - - - - - 0.833 - - - cyclin K [Source:NCBI gene;Acc:423446]
58. ABHD17A ENSGALG00000041163 5578 0.832 - - - - - - 0.832 - - - abhydrolase domain containing 17A [Source:HGNC Symbol;Acc:HGNC:28756]
59. PRPF6 ENSGALG00000006001 8572 0.832 - - - - - - - 0.832 - - pre-mRNA processing factor 6 [Source:HGNC Symbol;Acc:HGNC:15860]
60. RPS19BP1 ENSGALG00000029810 5768 0.831 - - - - - - 0.831 - - - ribosomal protein S19 binding protein 1 [Source:NCBI gene;Acc:418011]
61. IK ENSGALG00000037172 12100 0.83 - - - - - - 0.830 - - - IK cytokine, down-regulator of HLA II [Source:NCBI gene;Acc:416133]
62. FXYD6 ENSGALG00000025937 4073 0.83 - - - - - - - 0.830 - - FXYD domain containing ion transport regulator 6 [Source:NCBI gene;Acc:770406]
63. TRIP12 ENSGALG00000002929 11713 0.828 - - - - - - 0.828 - - - thyroid hormone receptor interactor 12 [Source:HGNC Symbol;Acc:HGNC:12306]
64. CMSS1 ENSGALG00000015267 2954 0.827 - - - - - - 0.827 - - - cms1 ribosomal small subunit homolog (yeast) [Source:NCBI gene;Acc:418381]
65. DPYSL3 ENSGALG00000007582 7743 0.827 - - - - - - 0.827 - - - dihydropyrimidinase like 3 [Source:NCBI gene;Acc:395154]
66. ENSGALG00000007514 ENSGALG00000007514 4866 0.823 - - - - - - - 0.823 - -
67. VPS29 ENSGALG00000004529 22509 0.823 - - - - - - 0.823 - - - VPS29, retromer complex component [Source:NCBI gene;Acc:416867]
68. SEC22B ENSGALG00000039704 16080 0.821 - - - - - - 0.821 - - - SEC22 homolog B, vesicle trafficking protein [Source:NCBI gene;Acc:424377]
69. MAU2 ENSGALG00000002969 10604 0.821 - - - - - - - 0.821 - - MAU2 sister chromatid cohesion factor [Source:HGNC Symbol;Acc:HGNC:29140]
70. EIF2D ENSGALG00000000856 8348 0.816 - - - - - - 0.816 - - - eukaryotic translation initiation factor 2D [Source:NCBI gene;Acc:419845]
71. TRAPPC4 ENSGALG00000007707 3568 0.815 - - - - - - 0.815 - - - trafficking protein particle complex 4 [Source:NCBI gene;Acc:419788]
72. TIMMDC1 ENSGALG00000024480 9337 0.815 - - - - - - - 0.815 - - translocase of inner mitochondrial membrane domain containing 1 [Source:NCBI gene;Acc:418453]
73. AMBRA1 ENSGALG00000008358 2865 0.814 - - - - - - - 0.814 - - autophagy and beclin 1 regulator 1 [Source:HGNC Symbol;Acc:HGNC:25990]
74. LPAR1 ENSGALG00000015729 3874 0.814 - - - - - - 0.814 - - - lysophosphatidic acid receptor 1 [Source:NCBI gene;Acc:427339]
75. BIVM ENSGALG00000016861 3987 0.814 - - - - - - 0.814 - - - basic, immunoglobulin-like variable motif containing [Source:NCBI gene;Acc:374099]
76. MPI ENSGALG00000029296 11781 0.813 - - - - - - - 0.813 - - mannose phosphate isomerase [Source:HGNC Symbol;Acc:HGNC:7216]
77. SYS1 ENSGALG00000003929 4487 0.813 - - - - - - 0.813 - - - SYS1, golgi trafficking protein [Source:NCBI gene;Acc:419183]
78. IFT74 ENSGALG00000001801 1932 0.813 - - - - - - 0.813 - - - intraflagellar transport 74 [Source:HGNC Symbol;Acc:HGNC:21424]
79. MTDH ENSGALG00000034050 9525 0.812 - - - - - - 0.812 - - - metadherin [Source:HGNC Symbol;Acc:HGNC:29608]
80. PLK1 ENSGALG00000006110 12892 0.812 - - - - - - - 0.812 - - polo like kinase 1 [Source:NCBI gene;Acc:416575]
81. DTYMK ENSGALG00000006305 11736 0.811 - - - - - - 0.811 - - - deoxythymidylate kinase [Source:NCBI gene;Acc:770258]
82. ZFR ENSGALG00000003235 8466 0.811 - - - - - - 0.811 - - - zinc finger RNA binding protein, transcript variant X3
83. ATP5A1 ATP5A1 32367 0.81 - - - - - - - 0.810 - -
84. CSTF3 ENSGALG00000011685 4711 0.81 - - - - - - 0.810 - - - cleavage stimulation factor subunit 3 [Source:NCBI gene;Acc:421595]
85. NDUFB4 ENSGALG00000027688 8951 0.808 - - - - - - 0.808 - - - NADH:ubiquinone oxidoreductase subunit B4 [Source:HGNC Symbol;Acc:HGNC:7699]
86. SUN1 ENSGALG00000003781 3442 0.808 - - - - - - 0.808 - - - Sad1 and UNC84 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:18587]
87. SQLE ENSGALG00000036915 4172 0.807 - - - - - - 0.807 - - - squalene epoxidase [Source:NCBI gene;Acc:420335]
88. NDUFS5 ENSGALG00000003625 27698 0.807 - - - - - - - 0.807 - - NADH:ubiquinone oxidoreductase subunit S5 [Source:HGNC Symbol;Acc:HGNC:7712]
89. SH3BGRL ENSGALG00000007128 18708 0.806 - - - - - - - 0.806 - - SH3 domain binding glutamate rich protein like [Source:NCBI gene;Acc:422277]
90. PSMD13 ENSGALG00000043684 14720 0.806 - - - - - - - 0.806 - - proteasome 26S subunit, non-ATPase 13 [Source:HGNC Symbol;Acc:HGNC:9558]
91. RNF11 ENSGALG00000010539 8617 0.806 - - - - - - - 0.806 - - ring finger protein 11 [Source:NCBI gene;Acc:424631]
92. HAUS1 ENSGALG00000040397 6195 0.805 - - - - - - 0.805 - - - HAUS augmin like complex subunit 1 [Source:NCBI gene;Acc:416380]
93. CAMSAP2 ENSGALG00000002145 6109 0.805 - - - - - - 0.805 - - - calmodulin regulated spectrin associated protein family member 2 [Source:HGNC Symbol;Acc:HGNC:29188]
94. LYPLA1 ENSGALG00000040421 14720 0.805 - - - - - - 0.805 - - - lysophospholipase I [Source:HGNC Symbol;Acc:HGNC:6737]
95. COQ7 ENSGALG00000006861 5118 0.804 - - - - - - 0.804 - - - coenzyme Q7, hydroxylase [Source:NCBI gene;Acc:416609]
96. NEK4 ENSGALG00000041428 4473 0.804 - - - - - - 0.804 - - - NIMA related kinase 4 [Source:HGNC Symbol;Acc:HGNC:11399]
97. SRP72 ENSGALG00000011403 13666 0.803 - - - - - - 0.803 - - - signal recognition particle 72 [Source:NCBI gene;Acc:422626]
98. FEN1 ENSGALG00000033781 16551 0.803 - - - - - - 0.803 - - - flap structure-specific endonuclease 1 [Source:NCBI gene;Acc:769677]
99. RNASEH1 ENSGALG00000016389 2694 0.802 - - - - - - 0.802 - - - ribonuclease H1 [Source:NCBI gene;Acc:395848]
100. UFD1L 12964 0.802 - - - - - - 0.802 - - - ubiquitin fusion degradation 1 like (yeast)

There are 447 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA