Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for RPA3

Gene Name Gene ID Reads Annotation
RPA3 ENSGALG00000010700 6212 replication protein A3 [Source:HGNC Symbol;Acc:HGNC:10291]











Genes with expression patterns similar to RPA3

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. RPA3 ENSGALG00000010700 6212 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 replication protein A3 [Source:HGNC Symbol;Acc:HGNC:10291]
2. SPDL1 ENSGALG00000001942 4403 2.277 - - - - - - 0.783 0.758 - 0.736 spindle apparatus coiled-coil protein 1 [Source:HGNC Symbol;Acc:HGNC:26010]
3. TRAPPC4 ENSGALG00000007707 3568 1.673 - - - - 0.856 - - 0.817 - - trafficking protein particle complex 4 [Source:NCBI gene;Acc:419788]
4. WDR3 ENSGALG00000014791 5856 1.643 - - - - - - 0.819 0.824 - - WD repeat domain 3 [Source:NCBI gene;Acc:427952]
5. MED7 ENSGALG00000003870 4244 1.625 - - - - 0.862 - - 0.763 - - mediator complex subunit 7 [Source:HGNC Symbol;Acc:HGNC:2378]
6. SETD3 ENSGALG00000034802 4125 1.611 - - - - - - 0.809 0.802 - - SET domain containing 3 [Source:NCBI gene;Acc:423445]
7. UCHL3 ENSGALG00000016921 16208 1.591 - - - - - - 0.788 - - 0.803 ubiquitin C-terminal hydrolase L3 [Source:NCBI gene;Acc:395626]
8. PAK1IP1 ENSGALG00000012724 10907 1.587 - - - - - - - 0.825 - 0.762 PAK1 interacting protein 1 [Source:NCBI gene;Acc:420850]
9. ATG16L1 ENSGALG00000001619 3562 1.581 - - - - - - - 0.808 - 0.773 autophagy related 16 like 1 [Source:HGNC Symbol;Acc:HGNC:21498]
10. PCNP ENSGALG00000015330 15750 1.573 - - - - 0.806 - - - - 0.767 PEST proteolytic signal containing nuclear protein [Source:NCBI gene;Acc:418398]
11. MRPL55 5995 1.567 - - - - 0.861 - - 0.706 - - mitochondrial ribosomal protein L55
12. POMP ENSGALG00000017090 5504 1.564 - - - - - - 0.789 0.775 - - proteasome maturation protein [Source:HGNC Symbol;Acc:HGNC:20330]
13. MRPS22 ENSGALG00000005367 8307 1.563 - - - - 0.737 - - 0.826 - - mitochondrial ribosomal protein S22 [Source:HGNC Symbol;Acc:HGNC:14508]
14. C26H6ORF89 C26H6ORF89 1826 1.559 - - - - 0.806 - - - - 0.753
15. MRPL2 ENSGALG00000008597 16500 1.558 - - - - 0.761 - - 0.797 - - mitochondrial ribosomal protein L2 [Source:HGNC Symbol;Acc:HGNC:14056]
16. NPY ENSGALG00000010983 441 1.558 - - 0.706 - 0.852 - - - - - neuropeptide Y [Source:NCBI gene;Acc:396464]
17. SLC30A5 ENSGALG00000014787 5573 1.557 - - - - - - 0.800 - - 0.757 solute carrier family 30 member 5 [Source:NCBI gene;Acc:427173]
18. MRPL50 ENSGALG00000015543 11649 1.554 - - - - - - 0.760 - - 0.794 mitochondrial ribosomal protein L50 [Source:NCBI gene;Acc:427307]
19. TMEM165 ENSGALG00000027886 5468 1.55 - - - - - - - 0.748 - 0.802 transmembrane protein 165 [Source:HGNC Symbol;Acc:HGNC:30760]
20. TRAPPC6B ENSGALG00000010157 7567 1.549 - - - - - - 0.770 0.779 - - trafficking protein particle complex 6B [Source:NCBI gene;Acc:423337]
21. CCDC88A ENSGALG00000043587 2208 1.549 - - - - 0.812 - - - - 0.737 coiled-coil domain containing 88A [Source:HGNC Symbol;Acc:HGNC:25523]
22. PTX3 ENSGALG00000028284 2984 1.543 - - - - 0.790 - - - - 0.753 pentraxin 3 [Source:NCBI gene;Acc:548626]
23. WASF1 ENSGALG00000015066 5628 1.542 - - - - 0.734 - - - - 0.808 WAS protein family member 1 [Source:HGNC Symbol;Acc:HGNC:12732]
24. ENSGALG00000026433 ENSGALG00000026433 14463 1.532 - - - - - - - 0.725 - 0.807
25. DAD1 ENSGALG00000035626 32604 1.528 - - - - - - 0.726 0.802 - - defender against cell death 1 [Source:NCBI gene;Acc:395343]
26. GCSH ENSGALG00000032679 29231 1.524 - - - - - - - 0.782 - 0.742 glycine cleavage system protein H [Source:NCBI gene;Acc:415803]
27. ARL9 ENSGALG00000026653 1867 1.518 - - - - 0.706 - - 0.812 - - ADP ribosylation factor like GTPase 9 [Source:HGNC Symbol;Acc:HGNC:23592]
28. UTP18 ENSGALG00000002985 7129 1.517 - - - - 0.799 - - 0.718 - - UTP18, small subunit processome component [Source:HGNC Symbol;Acc:HGNC:24274]
29. SDF2L1 ENSGALG00000031982 6084 1.516 - - - - - - - 0.813 - 0.703 stromal cell derived factor 2 like 1 [Source:HGNC Symbol;Acc:HGNC:10676]
30. C11H16ORF80 C11H16ORF80 18673 1.513 - - - - - - 0.743 0.770 - -
31. BRCA1 ENSGALG00000002781 2052 1.511 - - - - 0.770 - 0.741 - - - BRCA1, DNA repair associated [Source:NCBI gene;Acc:373983]
32. FGFR1OP2 ENSGALG00000014084 1881 1.509 - - - - 0.773 - 0.736 - - - FGFR1 oncogene partner 2 [Source:NCBI gene;Acc:418214]
33. YRDC ENSGALG00000029001 6529 1.509 - - - - - - 0.728 0.781 - - yrdC N6-threonylcarbamoyltransferase domain containing [Source:HGNC Symbol;Acc:HGNC:28905]
34. NOP16 ENSGALG00000003355 10692 1.508 - - - - - - 0.712 0.796 - - NOP16 nucleolar protein
35. C10ORF58 C10ORF58 5045 1.504 - - - - 0.777 - - - - 0.727
36. GABPB1 ENSGALG00000023440 5676 1.503 - - - - - - 0.705 0.798 - - GA binding protein transcription factor beta subunit 1 [Source:NCBI gene;Acc:415453]
37. TMEM68 ENSGALG00000031835 1691 1.502 - - - - 0.747 - - - - 0.755 transmembrane protein 68 [Source:NCBI gene;Acc:421124]
38. STIL ENSGALG00000010478 1398 1.501 - - - - 0.789 - - - - 0.712 STIL, centriolar assembly protein [Source:HGNC Symbol;Acc:HGNC:10879]
39. HOXA5 ENSGALG00000025929 6231 1.499 - - - - - - 0.731 0.768 - - homeobox A5 [Source:NCBI gene;Acc:100858404]
40. GTF2E1 ENSGALG00000042320 7712 1.498 - - - - 0.780 - - - - 0.718 general transcription factor IIE subunit 1 [Source:HGNC Symbol;Acc:HGNC:4650]
41. ENSGALG00000009044 ENSGALG00000009044 14492 1.497 - - - - - - 0.766 - - 0.731
42. DSCR3 3583 1.497 - - - - - - 0.785 0.712 - - DSCR3 arrestin fold containing, transcript variant X1
43. MOSPD2 ENSGALG00000016568 1765 1.496 - - - - - - 0.772 0.724 - - motile sperm domain containing 2 [Source:NCBI gene;Acc:418627]
44. C14orf80 C14orf80 1921 1.496 - - - - - - - 0.749 - 0.747
45. CLSPN ENSGALG00000002346 2590 1.494 - - - - - - - 0.725 - 0.769 claspin [Source:NCBI gene;Acc:428223]
46. C1H12ORF4 2696 1.493 - - - - - - 0.755 0.738 - - chromosome 1 open reading frame, human C12orf4
47. MRPL47 ENSGALG00000013759 9044 1.492 - - - - 0.709 - 0.783 - - - mitochondrial ribosomal protein L47 [Source:HGNC Symbol;Acc:HGNC:16652]
48. R3HDM1 ENSGALG00000012246 6580 1.491 - - - - - - 0.760 0.731 - - R3H domain containing 1 [Source:HGNC Symbol;Acc:HGNC:9757]
49. DHX38 ENSGALG00000000787 6913 1.49 - - - - - - 0.779 - - 0.711 DEAH-box helicase 38 [Source:NCBI gene;Acc:415875]
50. HYPK ENSGALG00000013916 4900 1.488 - - - - 0.763 - 0.725 - - - huntingtin interacting protein K [Source:NCBI gene;Acc:770307]
51. SLC12A4 ENSGALG00000034179 5674 1.487 - - - - - - - 0.742 - 0.745 solute carrier family 12 member 4 [Source:HGNC Symbol;Acc:HGNC:10913]
52. SMC4 ENSGALG00000009553 15715 1.486 - - - - - - 0.721 - - 0.765 structural maintenance of chromosomes 4 [Source:NCBI gene;Acc:395189]
53. NUP85 ENSGALG00000007974 21249 1.485 - - - - - - 0.727 0.758 - - nucleoporin 85 [Source:NCBI gene;Acc:422120]
54. PCNT ENSGALG00000007021 6428 1.483 - - - - - - 0.703 0.780 - - pericentrin [Source:HGNC Symbol;Acc:HGNC:16068]
55. ARHGAP21 ENSGALG00000007721 3961 1.482 - - - - - - - 0.731 - 0.751 Rho GTPase activating protein 21 [Source:NCBI gene;Acc:420500]
56. SGOL1 SGOL1 3919 1.481 - - - - 0.766 - - 0.715 - -
57. ALDH7A1 ENSGALG00000008229 5891 1.48 - - - - - - 0.720 - - 0.760 aldehyde dehydrogenase 7 family member A1 [Source:HGNC Symbol;Acc:HGNC:877]
58. SNRNP40 ENSGALG00000000615 32298 1.478 - - - - - - 0.712 - - 0.766 small nuclear ribonucleoprotein U5 subunit 40 [Source:NCBI gene;Acc:419556]
59. SUV39H2 ENSGALG00000013920 4360 1.468 - - - - - - - 0.766 - 0.702 suppressor of variegation 3-9 homolog 2 [Source:NCBI gene;Acc:426314]
60. VPS8 ENSGALG00000006704 5419 1.468 - - - - - - 0.714 0.754 - - VPS8, CORVET complex subunit [Source:HGNC Symbol;Acc:HGNC:29122]
61. ACADL ENSGALG00000002891 8058 1.465 - - - - - - 0.707 - - 0.758 acyl-CoA dehydrogenase long chain [Source:NCBI gene;Acc:424005]
62. RAB40C ENSGALG00000030481 3095 1.46 - - - - - - 0.758 0.702 - - RAB40C, member RAS oncogene family [Source:NCBI gene;Acc:769960]
63. RRAGC ENSGALG00000033079 4966 1.457 - - - - 0.706 - - - - 0.751 Ras related GTP binding C [Source:NCBI gene;Acc:419605]
64. COG5 ENSGALG00000042764 4205 1.456 - - - - - - 0.733 - - 0.723 component of oligomeric golgi complex 5 [Source:NCBI gene;Acc:417704]
65. DROSHA ENSGALG00000012916 2310 1.452 - - - - 0.730 - - 0.722 - - drosha ribonuclease III [Source:NCBI gene;Acc:420911]
66. GTF3C1 ENSGALG00000007387 5788 1.449 - - - - 0.734 - - - - 0.715 general transcription factor IIIC subunit 1 [Source:HGNC Symbol;Acc:HGNC:4664]
67. CTSL2 CTSL2 7966 1.443 - - - - - - 0.732 0.711 - -
68. SSR2 ENSGALG00000000764 32190 1.442 - - - - - - - 0.726 - 0.716 signal sequence receptor subunit 2 [Source:NCBI gene;Acc:425656]
69. GRTP1 ENSGALG00000016828 3145 1.441 - - - - 0.701 - - - - 0.740 growth hormone regulated TBC protein 1 [Source:HGNC Symbol;Acc:HGNC:20310]
70. NUBP1 ENSGALG00000007241 3791 1.43 - - - - 0.703 - - 0.727 - - nucleotide binding protein 1 [Source:NCBI gene;Acc:416634]
71. C2H6orf52 ENSGALG00000012721 3631 1.426 - - - - - - 0.708 0.718 - - chromosome 2 C6orf52 homolog [Source:NCBI gene;Acc:420849]
72. TBPL1 ENSGALG00000013981 3710 1.424 - - - - - - - 0.702 - 0.722 TATA-box binding protein like 1 [Source:NCBI gene;Acc:395517]
73. PPFIA1 ENSGALG00000035774 5258 1.419 - - - - - - - 0.708 - 0.711 PTPRF interacting protein alpha 1 [Source:HGNC Symbol;Acc:HGNC:9245]
74. MBIP ENSGALG00000010096 2476 1.413 - - - - - - 0.702 0.711 - - MAP3K12 binding inhibitory protein 1 [Source:HGNC Symbol;Acc:HGNC:20427]
75. XPA ENSGALG00000028998 8621 1.41 - - - - - - - 0.707 - 0.703 XPA, DNA damage recognition and repair factor [Source:NCBI gene;Acc:395659]
76. CLIC3 ENSGALG00000038789 233 0.918 - - - - 0.918 - - - - - chloride intracellular channel 3 [Source:HGNC Symbol;Acc:HGNC:2064]
77. SCAF4 ENSGALG00000033965 2027 0.917 - - - - 0.917 - - - - - SR-related CTD associated factor 4 [Source:NCBI gene;Acc:418492]
78. CMTM3 ENSGALG00000000424 393 0.91 - - - - 0.910 - - - - - CKLF like MARVEL transmembrane domain containing 3 [Source:NCBI gene;Acc:414829]
79. STON2 ENSGALG00000010579 76 0.899 - - - - 0.899 - - - - - stonin 2 [Source:HGNC Symbol;Acc:HGNC:30652]
80. CCDC6 ENSGALG00000003165 93 0.898 - - - - 0.898 - - - - - coiled-coil domain containing 6 [Source:NCBI gene;Acc:423666]
81. AVL9 ENSGALG00000041568 1558 0.897 - - - - 0.897 - - - - - AVL9 cell migration associated [Source:HGNC Symbol;Acc:HGNC:28994]
82. PAQR8 ENSGALG00000016675 85 0.896 - - - - 0.896 - - - - - progestin and adipoQ receptor family member 8 [Source:NCBI gene;Acc:422042]
83. SPSB3 ENSGALG00000002285 1329 0.896 - - - - 0.896 - - - - - splA/ryanodine receptor domain and SOCS box containing 3 [Source:HGNC Symbol;Acc:HGNC:30629]
84. MOCS3 ENSGALG00000007986 308 0.896 - - - - 0.896 - - - - - molybdenum cofactor synthesis 3 [Source:HGNC Symbol;Acc:HGNC:15765]
85. SRSF4 1200 0.895 - - - - 0.895 - - - - - serine and arginine rich splicing factor 4, transcript variant X2
86. FAM171B ENSGALG00000002646 837 0.895 - - - - 0.895 - - - - - family with sequence similarity 171 member B [Source:HGNC Symbol;Acc:HGNC:29412]
87. DUS2 856 0.894 - - - - 0.894 - - - - - dihydrouridine synthase 2, transcript variant X2
88. ENSGALG00000022967 ENSGALG00000022967 240 0.892 - - - - 0.892 - - - - -
89. GLT8D1 ENSGALG00000001642 4232 0.892 - - - - 0.892 - - - - - glycosyltransferase 8 domain containing 1 [Source:NCBI gene;Acc:415898]
90. CANT1 ENSGALG00000011822 2218 0.891 - - - - 0.891 - - - - - calcium activated nucleotidase 1 [Source:NCBI gene;Acc:430103]
91. TAC1 ENSGALG00000009737 2211 0.89 - - - - 0.890 - - - - - tachykinin precursor 1 [Source:HGNC Symbol;Acc:HGNC:11517]
92. ORC4 ENSGALG00000012448 8405 0.89 - - - - 0.890 - - - - - origin recognition complex subunit 4 [Source:HGNC Symbol;Acc:HGNC:8490]
93. UTP15 ENSGALG00000013510 13122 0.889 - - - - - - - 0.889 - - UTP15, small subunit processome component [Source:NCBI gene;Acc:426152]
94. CECR1 336 0.889 - - - - 0.889 - - - - - cat eye syndrome chromosome region, candidate 1, transcript variant X2
95. C1orf50 ENSGALG00000004800 4894 0.887 - - - - 0.887 - - - - - chromosome 1 open reading frame 50 [Source:HGNC Symbol;Acc:HGNC:28795]
96. KCNC4 ENSGALG00000000400 129 0.887 - - - - 0.887 - - - - - potassium voltage-gated channel, Shaw-related subfamily, member 4, transcript variant X1
97. ASTE1 ENSGALG00000036171 155 0.887 - - - - 0.887 - - - - - asteroid homolog 1 (Drosophila), transcript variant X3
98. KIAA1407 KIAA1407 252 0.882 - - - - 0.882 - - - - -
99. NUBP2 ENSGALG00000002316 3643 0.881 - - - - - - - 0.881 - - nucleotide binding protein 2 [Source:NCBI gene;Acc:416402]
100. CSPP1 1756 0.881 - - - - 0.881 - - - - - centrosome and spindle pole associated protein 1

There are 869 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA