Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for RPA1

Gene Name Gene ID Reads Annotation
RPA1 ENSGALG00000003072 8023 replication protein A1 [Source:NCBI gene;Acc:417563]











Genes with expression patterns similar to RPA1

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. RPA1 ENSGALG00000003072 8023 9 1.000 1.000 - 1.000 1.000 1.000 1.000 1.000 1.000 1.000 replication protein A1 [Source:NCBI gene;Acc:417563]
2. BFAR ENSGALG00000003111 1778 1.878 - - - - - - 0.947 0.931 - - bifunctional apoptosis regulator [Source:HGNC Symbol;Acc:HGNC:17613]
3. BPTF ENSGALG00000038222 7521 1.867 - - - - - - 0.941 0.926 - - bromodomain PHD finger transcription factor [Source:HGNC Symbol;Acc:HGNC:3581]
4. NPHP3 ENSGALG00000034586 1465 1.857 - - - - - - 0.939 0.918 - - nephrocystin 3, transcript variant X1
5. AP3S1 ENSGALG00000002341 12388 1.826 - - - - - - 0.864 0.962 - - adaptor related protein complex 3 sigma 1 subunit [Source:NCBI gene;Acc:427389]
6. RGCC ENSGALG00000016954 1282 1.816 - - - - - - 0.897 0.919 - - regulator of cell cycle [Source:HGNC Symbol;Acc:HGNC:20369]
7. SF3A3 ENSGALG00000001540 9664 1.684 - - - - - - 0.937 0.747 - - splicing factor 3a subunit 3 [Source:HGNC Symbol;Acc:HGNC:10767]
8. UBR7 ENSGALG00000010842 16488 1.547 - - - - - - 0.800 0.747 - - Gallus gallus ubiquitin protein ligase E3 component n-recognin 7 (putative) (UBR7), mRNA. [Source:RefSeq mRNA;Acc:NM_001318461]
9. RCC2 ENSGALG00000031684 28067 1.498 - - - - - - 0.737 0.761 - - regulator of chromosome condensation 2 [Source:HGNC Symbol;Acc:HGNC:30297]
10. EI24 ENSGALG00000038097 24081 0.971 - - - - - - 0.971 - - - EI24, autophagy associated transmembrane protein [Source:NCBI gene;Acc:419711]
11. XRN1 ENSGALG00000002706 4014 0.97 - - - - - - 0.970 - - - 5'-3' exoribonuclease 1 [Source:HGNC Symbol;Acc:HGNC:30654]
12. CEPT1 ENSGALG00000000142 4219 0.97 - - - - - - - 0.970 - - choline/ethanolamine phosphotransferase 1 [Source:NCBI gene;Acc:421152]
13. MRPS36 ENSGALG00000014789 7584 0.969 - - - - - - - 0.969 - - mitochondrial ribosomal protein S36 [Source:HGNC Symbol;Acc:HGNC:16631]
14. MAP1LC3A ENSGALG00000038721 2230 0.964 - - - - - - 0.964 - - - microtubule associated protein 1 light chain 3 alpha
15. MRE11A MRE11A 5754 0.963 - - - - - - 0.963 - - -
16. PPP3R1 ENSGALG00000023648 3417 0.963 - - - - - - 0.963 - - - protein phosphatase 3 regulatory subunit B, alpha [Source:NCBI gene;Acc:378804]
17. TM9SF3 ENSGALG00000005534 15290 0.962 - - - - - - 0.962 - - - transmembrane 9 superfamily member 3
18. TBCCD1 ENSGALG00000006566 2696 0.962 - - - - - - 0.962 - - - TBCC domain containing 1 [Source:NCBI gene;Acc:424869]
19. CYP51A1 ENSGALG00000009365 6996 0.962 - - - - - - - 0.962 - - cytochrome P450 family 51 subfamily A member 1 [Source:NCBI gene;Acc:420548]
20. KCTD9 ENSGALG00000000275 3455 0.961 - - - - - - 0.961 - - - potassium channel tetramerization domain containing 9 [Source:NCBI gene;Acc:419526]
21. ARHGAP29 ENSGALG00000005683 3622 0.959 - - - - - - 0.959 - - - Rho GTPase activating protein 29 [Source:NCBI gene;Acc:424488]
22. SCRN1 ENSGALG00000011176 3783 0.959 - - - - - - 0.959 - - - secernin 1 [Source:HGNC Symbol;Acc:HGNC:22192]
23. NDUFA9 ENSGALG00000017282 14358 0.958 - - - - - - 0.958 - - - NADH:ubiquinone oxidoreductase subunit A9 [Source:NCBI gene;Acc:419039]
24. MYST2 MYST2 8078 0.958 - - - - - - 0.958 - - -
25. ABCD3 ENSGALG00000005647 4844 0.957 - - - - - - 0.957 - - - ATP binding cassette subfamily D member 3 [Source:NCBI gene;Acc:424487]
26. TMEM108 ENSGALG00000036412 2903 0.957 - - - - - - 0.957 - - - transmembrane protein 108 [Source:HGNC Symbol;Acc:HGNC:28451]
27. AK6 ENSGALG00000020534 4791 0.956 - - - - - - 0.956 - - - adenylate kinase 6 [Source:NCBI gene;Acc:425215]
28. gga-mir-6643 ENSGALG00000027935 4442 0.956 - - - - - - 0.956 - - - gga-mir-6643 [Source:miRBase;Acc:MI0022462]
29. WDR11 ENSGALG00000035013 3393 0.955 - - - - - - - 0.955 - - WD repeat domain 11 [Source:HGNC Symbol;Acc:HGNC:13831]
30. RILPL2 ENSGALG00000003321 5632 0.955 - - - - - - 0.955 - - - Rab interacting lysosomal protein like 2 [Source:HGNC Symbol;Acc:HGNC:28787]
31. AKAP7 ENSGALG00000029794 3287 0.955 - - - - - - 0.955 - - - A-kinase anchoring protein 7 [Source:HGNC Symbol;Acc:HGNC:377]
32. NCOA4 ENSGALG00000002066 10544 0.954 - - - - - - 0.954 - - - nuclear receptor coactivator 4 [Source:NCBI gene;Acc:423615]
33. IRAK2 ENSGALG00000008407 5934 0.954 - - - - - - 0.954 - - - interleukin 1 receptor associated kinase 2 [Source:NCBI gene;Acc:416118]
34. DNA2 ENSGALG00000004037 5426 0.954 - - - - - - 0.954 - - - DNA replication helicase/nuclease 2 [Source:NCBI gene;Acc:423688]
35. POLR3E ENSGALG00000007008 4010 0.954 - - - - - - 0.954 - - - RNA polymerase III subunit E [Source:HGNC Symbol;Acc:HGNC:30347]
36. SDF4 ENSGALG00000001872 6382 0.954 - - - - - - 0.954 - - - stromal cell derived factor 4 [Source:NCBI gene;Acc:419423]
37. ATE1 ENSGALG00000009502 3751 0.953 - - - - - - 0.953 - - - arginyltransferase 1 [Source:NCBI gene;Acc:423936]
38. SOD2 ENSGALG00000011661 13178 0.953 - - - - - - 0.953 - - - superoxide dismutase 2 [Source:NCBI gene;Acc:374042]
39. LATS2 4776 0.952 - - - - - - 0.952 - - - large tumor suppressor kinase 2
40. YBX1 ENSGALG00000004848 20992 0.951 - - - - - - 0.951 - - - Y-box binding protein 1 [Source:NCBI gene;Acc:386575]
41. UPF1 ENSGALG00000003220 9496 0.951 - - - - - - 0.951 - - - UPF1, RNA helicase and ATPase [Source:HGNC Symbol;Acc:HGNC:9962]
42. ATN1 ENSGALG00000014554 3270 0.951 - - - - - - 0.951 - - - atrophin 1 [Source:HGNC Symbol;Acc:HGNC:3033]
43. ZMYND11 ENSGALG00000006599 5740 0.951 - - - - - - 0.951 - - - zinc finger MYND-type containing 11 [Source:HGNC Symbol;Acc:HGNC:16966]
44. ARID4A ENSGALG00000012037 8554 0.95 - - - - - - 0.950 - - - AT-rich interaction domain 4A [Source:NCBI gene;Acc:423541]
45. CLCN3 ENSGALG00000009674 3704 0.95 - - - - - - 0.950 - - - chloride voltage-gated channel 3 [Source:HGNC Symbol;Acc:HGNC:2021]
46. MOB1B ENSGALG00000011573 567 0.949 - - - - - - 0.949 - - - MOB kinase activator 1B [Source:HGNC Symbol;Acc:HGNC:29801]
47. LACTB2 ENSGALG00000038745 3460 0.949 - - - - - - 0.949 - - - lactamase beta 2 [Source:NCBI gene;Acc:420178]
48. SHQ1 ENSGALG00000007798 1982 0.949 - - - - - - 0.949 - - - SHQ1, H/ACA ribonucleoprotein assembly factor [Source:HGNC Symbol;Acc:HGNC:25543]
49. THOC2 ENSGALG00000008507 9501 0.948 - - - - - - 0.948 - - - THO complex 2 [Source:HGNC Symbol;Acc:HGNC:19073]
50. RRN3 ENSGALG00000041989 3934 0.947 - - - - - - 0.947 - - - RRN3 homolog, RNA polymerase I transcription factor [Source:NCBI gene;Acc:416414]
51. AP2B1 ENSGALG00000042125 13229 0.947 - - - - - - 0.947 - - - adaptor related protein complex 2 subunit beta 1 [Source:HGNC Symbol;Acc:HGNC:563]
52. METTL11A METTL11A 11876 0.947 - - - - - - 0.947 - - -
53. KIF15 ENSGALG00000036645 9946 0.947 - - - - - - 0.947 - - - kinesin family member 15 [Source:HGNC Symbol;Acc:HGNC:17273]
54. RBM12B ENSGALG00000035129 4314 0.947 - - - - - - 0.947 - - - RNA binding motif protein 12B [Source:NCBI gene;Acc:420223]
55. SREBF2 ENSGALG00000041687 4519 0.946 - - - - - - 0.946 - - - sterol regulatory element binding transcription factor 2 [Source:HGNC Symbol;Acc:HGNC:11290]
56. CENPF ENSGALG00000009690 10429 0.946 - - - - - - 0.946 - - - centromere protein F [Source:NCBI gene;Acc:395357]
57. MED6 ENSGALG00000029743 9414 0.946 - - - - - - 0.946 - - - mediator complex subunit 6 [Source:NCBI gene;Acc:426282]
58. DISP1 3281 0.945 - - - - - - 0.945 - - - dispatched RND transporter family member 1, transcript variant X3
59. INTS10 ENSGALG00000010130 6320 0.945 - - - - - - 0.945 - - - integrator complex subunit 10 [Source:NCBI gene;Acc:422489]
60. E2F6 ENSGALG00000016454 4747 0.945 - - - - - - 0.945 - - - E2F transcription factor 6 [Source:NCBI gene;Acc:421943]
61. TGS1 ENSGALG00000015340 5897 0.944 - - - - - - - 0.944 - - trimethylguanosine synthase 1 [Source:NCBI gene;Acc:421126]
62. OGFOD1 6926 0.944 - - - - - - 0.944 - - - 2-oxoglutarate and iron dependent oxygenase domain containing 1
63. EIF4G3 ENSGALG00000010084 5881 0.944 - - - - - - 0.944 - - - eukaryotic translation initiation factor 4 gamma 3 [Source:HGNC Symbol;Acc:HGNC:3298]
64. ENSGALG00000027854 ENSGALG00000027854 5007 0.943 - - - - - - 0.943 - - -
65. H2AFY_1 ENSGALG00000040141 4895 0.943 - - - - - - 0.943 - - - H2A histone family, member Y [Source:NCBI gene;Acc:395858]
66. NFU1 ENSGALG00000030200 6882 0.943 - - - - - - - 0.943 - - NFU1 iron-sulfur cluster scaffold [Source:NCBI gene;Acc:419513]
67. PNO1 ENSGALG00000009093 11153 0.943 - - - - - - 0.943 - - - partner of NOB1 homolog [Source:NCBI gene;Acc:769547]
68. NDUFB8 ENSGALG00000005704 5781 0.942 - - - - - - 0.942 - - - NADH:ubiquinone oxidoreductase subunit B8 [Source:NCBI gene;Acc:423763]
69. BTAF1 ENSGALG00000030598 3556 0.94 - - - - - - 0.940 - - - B-TFIID TATA-box binding protein associated factor 1 [Source:HGNC Symbol;Acc:HGNC:17307]
70. CAMKK2 ENSGALG00000040131 2795 0.94 - - - - - - 0.940 - - - calcium/calmodulin dependent protein kinase kinase 2, transcript variant X9
71. ACOT13 ENSGALG00000013632 5550 0.94 - - - - - - - 0.940 - - acyl-CoA thioesterase 13 [Source:HGNC Symbol;Acc:HGNC:20999]
72. FBXO28 ENSGALG00000009331 2871 0.94 - - - - - - - 0.940 - - F-box protein 28 [Source:HGNC Symbol;Acc:HGNC:29046]
73. POGLUT1 ENSGALG00000015480 12290 0.939 - - - - - - - 0.939 - - protein O-glucosyltransferase 1 [Source:NCBI gene;Acc:418455]
74. DOCK7 6385 0.939 - - - - - - - 0.939 - - dedicator of cytokinesis 7, transcript variant X3
75. COPG2 ENSGALG00000008144 4542 0.939 - - - - - - - 0.939 - - coatomer protein complex subunit gamma 2 [Source:HGNC Symbol;Acc:HGNC:2237]
76. MOB2 ENSGALG00000030499 3658 0.939 - - - - - - 0.939 - - - MOB kinase activator 2 [Source:HGNC Symbol;Acc:HGNC:24904]
77. JARID2 ENSGALG00000012702 4280 0.939 - - - - - - - 0.939 - - jumonji and AT-rich interaction domain containing 2 [Source:NCBI gene;Acc:420839]
78. MSRA ENSGALG00000028032 2607 0.938 - - - - - - 0.938 - - - methionine sulfoxide reductase A [Source:HGNC Symbol;Acc:HGNC:7377]
79. LEPROTL1 ENSGALG00000024482 4251 0.938 - - - - - - 0.938 - - - leptin receptor overlapping transcript-like 1
80. HACE1 ENSGALG00000015415 1194 0.938 - - - - - - 0.938 - - - HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 [Source:NCBI gene;Acc:421788]
81. CETN2 ENSGALG00000007510 1688 0.937 - - - - - - 0.937 - - - centrin 2 [Source:NCBI gene;Acc:422303]
82. TMEM168 ENSGALG00000009443 2452 0.937 - - - - - - - 0.937 - - transmembrane protein 168, transcript variant X1
83. SLC1A1 ENSGALG00000010187 637 0.937 - - - - - - 0.937 - - - solute carrier family 1 member 1 [Source:HGNC Symbol;Acc:HGNC:10939]
84. TRAM1 ENSGALG00000041112 22876 0.936 - - - - - - 0.936 - - - translocation associated membrane protein 1 [Source:NCBI gene;Acc:378918]
85. WDFY1 ENSGALG00000005158 2512 0.936 - - - - - - - 0.936 - - WD repeat and FYVE domain containing 1 [Source:NCBI gene;Acc:424806]
86. DNAJA3 ENSGALG00000007821 3963 0.936 - - - - - - 0.936 - - - DnaJ heat shock protein family (Hsp40) member A3 [Source:HGNC Symbol;Acc:HGNC:11808]
87. MYBBP1A ENSGALG00000001363 10331 0.936 - - - - - - - 0.936 - - MYB binding protein 1a [Source:HGNC Symbol;Acc:HGNC:7546]
88. MGAT4B ENSGALG00000005924 2663 0.935 - - - - - - - 0.935 - - alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B [Source:HGNC Symbol;Acc:HGNC:7048]
89. LMNB2 ENSGALG00000000470 4364 0.935 - - - - - - 0.935 - - - lamin B2 [Source:NCBI gene;Acc:396222]
90. RBBP6 ENSGALG00000006043 9708 0.935 - - - - - - 0.935 - - - RB binding protein 6, ubiquitin ligase [Source:HGNC Symbol;Acc:HGNC:9889]
91. CCND1 ENSGALG00000007555 6715 0.934 - - - - - - 0.934 - - - cyclin D1 [Source:NCBI gene;Acc:396341]
92. WDR36 ENSGALG00000000247 11277 0.934 - - - - - - - 0.934 - - WD repeat domain 36 [Source:NCBI gene;Acc:415609]
93. ENSGALG00000002923 ENSGALG00000002923 2233 0.934 - - - - - - 0.934 - - -
94. KIAA1191 ENSGALG00000003370 2599 0.934 - - - - - - - 0.934 - - KIAA1191 [Source:NCBI gene;Acc:416230]
95. KLF5 ENSGALG00000016927 1080 0.933 - - - - - - - 0.933 - - Kruppel like factor 5 [Source:HGNC Symbol;Acc:HGNC:6349]
96. PMPCB ENSGALG00000008280 6357 0.933 - - - - - - - 0.933 - - peptidase, mitochondrial processing beta subunit [Source:NCBI gene;Acc:417718]
97. POPDC3 ENSGALG00000027420 700 0.932 - - - - - - 0.932 - - - popeye domain containing 3 [Source:NCBI gene;Acc:395434]
98. UTP20 ENSGALG00000011643 3012 0.932 - - - - - - - 0.932 - - UTP20, small subunit processome component [Source:HGNC Symbol;Acc:HGNC:17897]
99. CXorf56 ENSGALG00000008652 7848 0.932 - - - - - - - 0.932 - - chromosome X open reading frame 56 [Source:HGNC Symbol;Acc:HGNC:26239]
100. GCN1L1 GCN1L1 4601 0.932 - - - - - - - 0.932 - -

There are 200 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA