Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for RNF4

Gene Name Gene ID Reads Annotation
RNF4 ENSGALG00000015668 15780 ring finger protein 4 [Source:NCBI gene;Acc:422886]











Genes with expression patterns similar to RNF4

Nr. Gene Name Gene ID Reads Σ scores E3 embryo E3 aorta E3 anterior slice 1 E3 anterior slice 2 E3 anterior slice 3 E3 posterior slice 1 E3 posterior slice 2 E3 posterior slice 3 E4 anterior slice 1 E4 posterior slice 1 Annotation
1. RNF4 ENSGALG00000015668 15780 10 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 ring finger protein 4 [Source:NCBI gene;Acc:422886]
2. USMG5 ENSGALG00000034645 33263 1.869 - - - - 0.873 - 0.996 - - - up-regulated during skeletal muscle growth 5 homolog (mouse) [Source:NCBI gene;Acc:423873]
3. MAST4 ENSGALG00000014784 4153 1.807 - - 0.814 - - - 0.993 - - - microtubule associated serine/threonine kinase family member 4 [Source:HGNC Symbol;Acc:HGNC:19037]
4. LZIC ENSGALG00000002616 9052 1.786 - - 0.872 - 0.914 - - - - - leucine zipper and CTNNBIP1 domain containing [Source:NCBI gene;Acc:419445]
5. STK4 ENSGALG00000004098 11366 1.77 - - - - 0.821 - - 0.949 - - serine/threonine kinase 4 [Source:NCBI gene;Acc:419187]
6. VMA21 ENSGALG00000009065 6432 1.758 - - - - 0.905 - - 0.853 - - VMA21, vacuolar ATPase assembly factor [Source:NCBI gene;Acc:422385]
7. SGTA ENSGALG00000014067 2248 1.722 - - 0.848 - - - - 0.874 - - small glutamine rich tetratricopeptide repeat containing alpha [Source:NCBI gene;Acc:426396]
8. SDCBP ENSGALG00000015436 1228 1.72 - - 0.814 - 0.906 - - - - - syndecan binding protein [Source:NCBI gene;Acc:421136]
9. COMMD2 ENSGALG00000028001 18981 1.668 - - - - 0.919 - 0.749 - - - COMM domain containing 2 [Source:HGNC Symbol;Acc:HGNC:24993]
10. NEK6 ENSGALG00000001118 20333 1.649 - - - - 0.916 - - 0.733 - - NIMA related kinase 6 [Source:NCBI gene;Acc:417101]
11. PTDSS1 ENSGALG00000030185 5515 1.639 - - 0.830 - - - - 0.809 - - phosphatidylserine synthase 1 [Source:NCBI gene;Acc:428374]
12. PSME3 ENSGALG00000002937 41148 1.623 - - - - 0.879 - 0.744 - - - proteasome activator subunit 3 [Source:NCBI gene;Acc:420017]
13. PSMG3 ENSGALG00000004203 11240 1.62 - - 0.708 - 0.912 - - - - - proteasome assembly chaperone 3 [Source:NCBI gene;Acc:416463]
14. MINOS1 ENSGALG00000004039 37740 1.614 - - - - 0.880 - - 0.734 - - mitochondrial inner membrane organizing system 1 [Source:NCBI gene;Acc:419474]
15. G3BP1 ENSGALG00000004160 36795 1.574 - - 0.710 - 0.864 - - - - - G3BP stress granule assembly factor 1 [Source:NCBI gene;Acc:416265]
16. C19H17ORF85 C19H17ORF85 2538 1.55 - - 0.847 - - 0.703 - - - -
17. RBM5 30998 1.543 - - 0.812 - - - - 0.731 - - RNA binding motif protein 5, transcript variant X1
18. ARF4 ENSGALG00000005622 50567 1.466 - - 0.758 - - 0.708 - - - - ADP ribosylation factor 4 [Source:HGNC Symbol;Acc:HGNC:655]
19. ENSGALG00000023447 ENSGALG00000023447 17486 0.997 - - - - - - 0.997 - - -
20. UFM1 ENSGALG00000017042 15794 0.997 - - - - - - 0.997 - - - ubiquitin fold modifier 1 [Source:NCBI gene;Acc:418894]
21. TPX2 ENSGALG00000006267 26087 0.997 - - - - - - 0.997 - - - TPX2, microtubule nucleation factor [Source:NCBI gene;Acc:395081]
22. NUS1 ENSGALG00000014899 13352 0.996 - - - - - - 0.996 - - - NUS1, dehydrodolichyl diphosphate synthase subunit [Source:HGNC Symbol;Acc:HGNC:21042]
23. SRPR SRPR 21067 0.996 - - - - - - 0.996 - - -
24. COL4A5 ENSGALG00000008141 15874 0.996 - - - - - - 0.996 - - - collagen type IV alpha 5 chain [Source:HGNC Symbol;Acc:HGNC:2207]
25. CTNNA1 ENSGALG00000002447 22379 0.996 - - - - - - 0.996 - - - catenin alpha 1 [Source:HGNC Symbol;Acc:HGNC:2509]
26. BCKDHB ENSGALG00000040702 9373 0.996 - - - - - - 0.996 - - - branched chain keto acid dehydrogenase E1, beta polypeptide [Source:NCBI gene;Acc:395375]
27. SESTD1 ENSGALG00000009031 13090 0.996 - - - - - - 0.996 - - - SEC14 and spectrin domain containing 1 [Source:HGNC Symbol;Acc:HGNC:18379]
28. INPP5K ENSGALG00000002739 8120 0.996 - - - - - - 0.996 - - - inositol polyphosphate-5-phosphatase K [Source:NCBI gene;Acc:771549]
29. FASN ENSGALG00000040896 17372 0.996 - - - - - - 0.996 - - - fatty acid synthase [Source:NCBI gene;Acc:396061]
30. TMEM258 ENSGALG00000038292 31116 0.995 - - - - - - 0.995 - - - transmembrane protein 258 [Source:NCBI gene;Acc:422964]
31. RALGAPA1 ENSGALG00000010088 6005 0.995 - - - - - - 0.995 - - - Ral GTPase activating protein catalytic alpha subunit 1 [Source:NCBI gene;Acc:423327]
32. RNF11 ENSGALG00000010539 8617 0.995 - - - - - - 0.995 - - - ring finger protein 11 [Source:NCBI gene;Acc:424631]
33. PSMD7 ENSGALG00000000707 26350 0.994 - - - - - - 0.994 - - - proteasome 26S subunit, non-ATPase 7 [Source:HGNC Symbol;Acc:HGNC:9565]
34. SSB ENSGALG00000009677 25335 0.994 - - - - - - 0.994 - - - Sjogren syndrome antigen B [Source:NCBI gene;Acc:395268]
35. HEY1 ENSGALG00000035031 8795 0.994 - - - - - - 0.994 - - - hes related family bHLH transcription factor with YRPW motif 1 [Source:HGNC Symbol;Acc:HGNC:4880]
36. CKS1B ENSGALG00000028664 42261 0.993 - - - - - - 0.993 - - - CDC28 protein kinase regulatory subunit 1B [Source:NCBI gene;Acc:100134845]
37. RANBP3 ENSGALG00000000577 8856 0.993 - - - - - - 0.993 - - - RAN binding protein 3 [Source:HGNC Symbol;Acc:HGNC:9850]
38. MRPS21 ENSGALG00000000456 35298 0.992 - - - - - - 0.992 - - - mitochondrial ribosomal protein S21 [Source:NCBI gene;Acc:426666]
39. DGCR14 DGCR14 2633 0.992 - - - - - - 0.992 - - -
40. RWDD2B ENSGALG00000015807 3601 0.992 - - - - - - 0.992 - - - RWD domain containing 2B [Source:HGNC Symbol;Acc:HGNC:1302]
41. ACAT1 ENSGALG00000017163 6239 0.992 - - - - - - 0.992 - - - acetyl-CoA acetyltransferase 1 [Source:NCBI gene;Acc:418968]
42. XRCC3 ENSGALG00000011533 3768 0.992 - - - - - - 0.992 - - - X-ray repair cross complementing 3 [Source:NCBI gene;Acc:423485]
43. UFSP2 ENSGALG00000010601 5809 0.992 - - - - - - 0.992 - - - UFM1 specific peptidase 2 [Source:NCBI gene;Acc:422542]
44. ENSGALG00000023608 ENSGALG00000023608 1538 0.991 - - - - - - 0.991 - - -
45. DNAH17 1389 0.991 - - - - - - 0.991 - - - dynein axonemal heavy chain 17, transcript variant X6
46. CEP19 ENSGALG00000006405 1645 0.991 - - - - - - 0.991 - - - centrosomal protein 19 [Source:NCBI gene;Acc:424858]
47. ZNF385D ENSGALG00000011283 2578 0.991 - - - - - - 0.991 - - - zinc finger protein 385D [Source:HGNC Symbol;Acc:HGNC:26191]
48. GCC1 ENSGALG00000033149 1915 0.991 - - - - - - 0.991 - - - GRIP and coiled-coil domain containing 1 [Source:NCBI gene;Acc:430581]
49. AP3B2 2331 0.99 - - - - - - 0.990 - - - adaptor related protein complex 3 beta 2 subunit, transcript variant X7
50. CFL2 ENSGALG00000010027 16952 0.989 - - - - - - 0.989 - - - cofilin 2 [Source:NCBI gene;Acc:423320]
51. MSH2 ENSGALG00000008962 9709 0.987 - - - - - - 0.987 - - - mutS homolog 2 [Source:HGNC Symbol;Acc:HGNC:7325]
52. H3-IX_1 H3-IX_1 54392 0.984 - - - - - - 0.984 - - -
53. MAPRE1 ENSGALG00000006657 64346 0.978 - - - - - - 0.978 - - - microtubule associated protein RP/EB family member 1 [Source:NCBI gene;Acc:419288]
54. HNRNPA2B1 ENSGALG00000011036 53662 0.961 - - - - - - 0.961 - - - heterogeneous nuclear ribonucleoprotein A2/B1 [Source:NCBI gene;Acc:420627]
55. TBC1D22B ENSGALG00000039130 3158 0.952 - - - - - - - 0.952 - - TBC1 domain family member 22B [Source:HGNC Symbol;Acc:HGNC:21602]
56. UBE2D3 ENSGALG00000012311 39831 0.94 - - - - 0.940 - - - - - ubiquitin conjugating enzyme E2 D3 [Source:NCBI gene;Acc:422713]
57. SLC30A4 ENSGALG00000005703 5696 0.931 - - - - 0.931 - - - - - solute carrier family 30 member 4 [Source:NCBI gene;Acc:415444]
58. RPL22 ENSGALG00000000719 74238 0.93 - - - - 0.930 - - - - - ribosomal protein L22 [Source:NCBI gene;Acc:373937]
59. HARS ENSGALG00000035080 11602 0.929 - - - - 0.929 - - - - - histidyl-tRNA synthetase [Source:NCBI gene;Acc:416132]
60. DLD ENSGALG00000007931 11011 0.929 - - - - 0.929 - - - - - dihydrolipoamide dehydrogenase [Source:NCBI gene;Acc:417699]
61. NUP88 ENSGALG00000032280 9847 0.927 - - - - 0.927 - - - - - nucleoporin 88 [Source:HGNC Symbol;Acc:HGNC:8067]
62. ENSGALG00000027854 ENSGALG00000027854 5007 0.927 - - - - 0.927 - - - - -
63. WDR92 ENSGALG00000008760 3934 0.925 - - - - 0.925 - - - - - WD repeat domain 92 [Source:NCBI gene;Acc:769534]
64. PRCC ENSGALG00000040696 9346 0.924 - - - - 0.924 - - - - - proline rich mitotic checkpoint control factor [Source:HGNC Symbol;Acc:HGNC:9343]
65. ACAT2 ENSGALG00000011659 12825 0.924 - - - - 0.924 - - - - - acetyl-CoA acetyltransferase 2 [Source:NCBI gene;Acc:421587]
66. KPNA2 ENSGALG00000003584 76058 0.924 - - - - 0.924 - - - - - karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
67. NDUFS4 ENSGALG00000028026 25876 0.922 - - - - 0.922 - - - - - NADH:ubiquinone oxidoreductase subunit S4 [Source:HGNC Symbol;Acc:HGNC:7711]
68. STARD3NL ENSGALG00000033038 4851 0.921 - - - - 0.921 - - - - - STARD3 N-terminal like [Source:HGNC Symbol;Acc:HGNC:19169]
69. GATC ENSGALG00000007195 8610 0.921 - - - - 0.921 - - - - - glutamyl-tRNA amidotransferase subunit C, transcript variant X2
70. MARC1 ENSGALG00000009453 5675 0.921 - - - - 0.921 - - - - - mitochondrial amidoxime reducing component 1 [Source:NCBI gene;Acc:428563]
71. DENR ENSGALG00000003795 30805 0.92 - - - - 0.920 - - - - - density regulated re-initiation and release factor [Source:NCBI gene;Acc:771794]
72. ERH ENSGALG00000017384 74926 0.92 - - - - - - 0.920 - - - ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
73. PBRM1 ENSGALG00000037455 6450 0.92 - - - - 0.920 - - - - - polybromo 1 [Source:NCBI gene;Acc:396074]
74. NARS ENSGALG00000040506 9506 0.919 - - - - 0.919 - - - - - asparaginyl-tRNA synthetase [Source:NCBI gene;Acc:426856]
75. DGKZ ENSGALG00000008380 5389 0.918 - - - - 0.918 - - - - - diacylglycerol kinase zeta [Source:NCBI gene;Acc:423197]
76. SYNE1 ENSGALG00000013505 2324 0.918 - - - - 0.918 - - - - - spectrin repeat containing, nuclear envelope 1, transcript variant X3
77. TM9SF3 ENSGALG00000005534 15290 0.917 - - - - 0.917 - - - - - transmembrane 9 superfamily member 3
78. EDNRA ENSGALG00000010013 2472 0.917 - - - - 0.917 - - - - - endothelin receptor type A [Source:NCBI gene;Acc:373908]
79. CDCA7 ENSGALG00000040833 7484 0.917 - - - - 0.917 - - - - - cell division cycle associated 7 [Source:HGNC Symbol;Acc:HGNC:14628]
80. SEPHS1 ENSGALG00000014575 10701 0.916 - - - - 0.916 - - - - - selenophosphate synthetase 1 [Source:NCBI gene;Acc:426612]
81. ENSGALG00000006569 ENSGALG00000006569 2169 0.916 - - - - 0.916 - - - - -
82. C9orf85 ENSGALG00000026001 4110 0.915 - - - - 0.915 - - - - - chromosome 9 open reading frame 85 [Source:HGNC Symbol;Acc:HGNC:28784]
83. LMAN2 ENSGALG00000033232 11740 0.915 - - - - 0.915 - - - - - lectin, mannose binding 2 [Source:HGNC Symbol;Acc:HGNC:16986]
84. COQ5 ENSGALG00000007185 5614 0.915 - - - - 0.915 - - - - - coenzyme Q5, methyltransferase [Source:NCBI gene;Acc:416975]
85. SRP19 ENSGALG00000000218 14207 0.915 - - - - 0.915 - - - - - signal recognition particle 19 [Source:HGNC Symbol;Acc:HGNC:11300]
86. ZC3H6 ENSGALG00000008269 10353 0.914 - - - - 0.914 - - - - - zinc finger CCCH-type containing 6 [Source:NCBI gene;Acc:421230]
87. FNDC5 ENSGALG00000003567 3328 0.914 - - - - 0.914 - - - - - Gallus gallus fibronectin type III domain containing 5 (FNDC5), mRNA. [Source:RefSeq mRNA;Acc:NM_001318986]
88. SPRED1 ENSGALG00000028203 6520 0.914 - - - - 0.914 - - - - - sprouty related EVH1 domain containing 1 [Source:NCBI gene;Acc:423292]
89. PITHD1 ENSGALG00000003986 11470 0.914 - - - - 0.914 - - - - - PITH domain containing 1 [Source:HGNC Symbol;Acc:HGNC:25022]
90. KIF11 ENSGALG00000030597 5528 0.913 - - - - 0.913 - - - - - kinesin family member 11 [Source:NCBI gene;Acc:423809]
91. LOC426385 ENSGALG00000026301 2703 0.913 - - - - 0.913 - - - - - serine/threonine kinase 35-like, transcript variant X2
92. ETS1 ENSGALG00000001143 7284 0.913 - - - - 0.913 - - - - - v-ets avian erythroblastosis virus E26 oncogene homolog 1 [Source:NCBI gene;Acc:396235]
93. SLMO2 SLMO2 9207 0.913 - - - - 0.913 - - - - -
94. NDUFV1 ENSGALG00000042809 6222 0.913 - - - - 0.913 - - - - - NADH:ubiquinone oxidoreductase core subunit V1 [Source:NCBI gene;Acc:430210]
95. SNX14 ENSGALG00000015831 2554 0.913 - - - - 0.913 - - - - - sorting nexin 14 [Source:NCBI gene;Acc:421832]
96. BIRC5 ENSGALG00000008713 46856 0.913 - - - - 0.913 - - - - - baculoviral IAP repeat containing 5 [Source:NCBI gene;Acc:374078]
97. RBM6 ENSGALG00000035578 1690 0.912 - - - - 0.912 - - - - - RNA binding motif protein 6 [Source:NCBI gene;Acc:415931]
98. GTF2H1 ENSGALG00000042340 1553 0.912 - - - - 0.912 - - - - - general transcription factor IIH subunit 1 [Source:NCBI gene;Acc:423081]
99. PHTF1 ENSGALG00000001845 3276 0.912 - - - - 0.912 - - - - - putative homeodomain transcription factor 1 [Source:HGNC Symbol;Acc:HGNC:8939]
100. SAP30 ENSGALG00000036252 2032 0.911 - - - - 0.911 - - - - - Sin3A associated protein 30 [Source:HGNC Symbol;Acc:HGNC:10532]

There are 571 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA